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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0395600 |
| Transcript ID | LotjaGi4g1v0395600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylate-binding protein family protein; TAIR: AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LX90|PABN3_ARATH Polyadenylate-binding protein 3; TrEMBL-Plants: tr|B7FID7|B7FID7_MEDTR Polyadenylate-binding protein II; Found in the gene: LotjaGi4g1v0395600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77370298..77373273) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACGAGGAAGAGCACGAGGTGTACGGAGGAGAAATCCCCGACGTCGGAGAAATGGAAGCAGACGTCGACATGTCCGC CGCCGACGATGACGCCGCCGCCGTCAAGGAGCTCGACGAAATGAAGCGCCGCTTGAAGGAAATGGAAGAAGAAGCCGCCG CTCTTCGTGAGATGCAAGCTAAAGTCGAGAAGGAGATTGGCACCGTTCAAGGTTTGCATAATCCTCTAATCATCAATTCA ATTATCATCCATGTTCAAATGTTTATGAGTTTGCTGGAATTCTACGTTGTTATTGTCTTTGACTTTCTCAACGTTTTGGC CACACTTGAGAGCACGCTTATCATCATCACGAGCTACCTTGTTTTTTTCTGCAAAGTCTTTTACGTTTCTGTTGTTTCAT ATAAGCTTAGCTAAAAGTCAAATTCTCAATTAAGCTCAACTTTAATGGTTATTGGAAAAATCTAAATCAATGAGAGCTTA GGTAACAACTAACAACCTTGCCTCGAATTGCTTGTTGGCGTTTTCATCGAAATCAACAAATCAAAGTTTTCTGAGACCCT TGGGCATGTATGATGTTTCTAGGACCAAGCCAGGTTATTTGAGCCGGAGACACCCACATCTAGGTGGGGCTAGCTCTCGG AGTGTGGATTTTTTTCATCCATGAGACTCAAACCCGGCATCATCGTAATCACCATTATTATTGATAATAACTTGTTCATT GAATATCTTTTGCAGATCCGGCTGCTGCAGCTGCTTCACAAGCAAACAAGGAGGAGACAGATGGTCGGTCCGTTTTTGTT GGCAATGTATGAAAGCCTATTTCTCCCCCTCTCTATCTCCTTTATGTGGATGTGCCATTGTAATTGGTGTTATTTAGAGT TGAACTAGAAGGGGAACAGAATGAATGTGTTCTGTGCTTATGAAATTTAAAAAGATATCACAGAAAGGAATAAAAAGTGA AAAAAGATTGAGGAGAAAAACTCGTATGTTTCTGAAAAGAAAAGAAAAAAGAAATGGAAAAAAAAGTCAAAAACATTTAC AGAAGGAAAAAATAGAATGAAGTTGAGAGAAAATTGAAAAATATGAAAAAAAGAAAAGGGAAAAATAAGAACATGTTGGG GGAATATGTGTATGGCATCTCATGGGAGTGGCAGGAAGTGGTACACCTGGAGTTAGAATGTGTTAAAGATGCTTCAACTT CACCACCGGAGGAGACAGCTTGTGGTTCTTTTGGAATAACATTCTGTAAGTGTTGGGCATGCAATCTTAGTCATATAGCC CTTTTGTTGATTGCAATGAGGTCTGAGGTGCGTCTGATGTGTGTCATTTGACCAACATGCCAAAGGGTATGCAGGTGCTG CTTCCCTATGGTCTTAATTGTTGATCTCATAACTGTTCTCTTCTCTATGAATTAAACTACCCAATATCTTTTGGTTCAGG GTTTTGATTTCTTATTCCAAGTCATTTCACTGAACATGAAGTTGCAAGTGAATGATTATATACATTCTTTTTTTCTTTTC CCCCCTCTGCTATCACTTCTTACAAAATTCTGATACTGCAAGTTTTACTAAAACAGTTTGAATTTGGACACATTTATTCA TGTTCCACTTATTCATTATCTGTTGGTGATGCATTAGATTAATAAATTTCATAGGATATAGGTATTGCAATCTTGCTCAT TCTTGGGGAAACTTGTAGACCGGATAAGGTTGGCCATGTTTTAAATTGCTTTCAGGAGGAAACCAATTTGTAGAATGTGT GAGAATGTTTCTGTAGTTTGAGCAAAAGCCTGTAATATGACTATAATCTATTATCATTAAGTCTTTGCTAAGTTAACTTT TCAAGGAGTGTGTAGCTTAGTTTGGTTTTGTGTTTGGGATGTCATATGATGATTGCCTTTTGTGGTTTACGAAGTCAGAA TTCCTCTGACGTGCAAGGAGTTTGAAAAATGCAGATTCATGTTGTGATTTAGAGAGGAGAATGGTTATGTTGTGAATTGT GGTACATTCAGAGGTCTATCTCTTTTTGGCTCCTTTCTTTAGGGATAAAAGTATAATTTGATTTTAAAATTGAGGGATAC ACCCTGGAGTTTTATGAGAGTTGAGTAATTTATGCAATTCCCCGTGAAATATATCGTAAATATGTTAGTAATAAGCTTCT ATATTTGGGGTAAGATGGTAGCATAATATAAACCGGGACAAGAGTCCTGAATATATTTATGTGATCTATAAGGTGTAATT ATGAATTCTAGTTTTTTTTCATTATAACTGGATTAAATGTGAGCACCCCTGAATTAACTTCATATGTTGCTCACTATTGG TGTCAAAATCCTTTGAAATTGATTTGTCTTTTACAGGTTGATTATGCATGCACACCTGAAGAAGTGCAGCAACACTTTCA ATCATGTGGTACAGTTAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTG TGGAAGCTGAAGCTGTTCAAGAGGCTCTCCGGTTGAATGAATCTGAACTGCATGGCCGTCAACTGAAGGTATGTTATTTC AATTGCTACTGTTCGCGTAATTCATACAACCCTTGGGTTCAAAAGAGCCATGAAATCATTATACTAAAATAGTAGTTTTT AATGATATTGATTAATTTATGATTCCAGGTTCTGCCTAAGAGGACCAATGTTCCTGGAATGAAGCAATATCGTCCTAGGC GCTATGATCCTTACATGGCATATGGTTTCAGGAGGCCATATGCTCCTTCTCCATACTTCTACTCCCCTTATGGGTATGCT GCATGCCGCTTTTGTTTAATTCACGTATGTTATGCCTAGCTGTTTTATTGATGTTTTGTGGTTTCTTTTCGTTTTCTGTT GAACTAATTGCAGGAAGGTTCCTAGGTTTAGAAGGCCAGCGCGTTACATGCCTTACTACTAGAAGTTCTTATGGAATGGT GTTGAAGATTTGGTGA
CDS sequence (LotjaGi4g1v0395600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAGGAAGAGCACGAGGTGTACGGAGGAGAAATCCCCGACGTCGGAGAAATGGAAGCAGACGTCGACATGTCCGC CGCCGACGATGACGCCGCCGCCGTCAAGGAGCTCGACGAAATGAAGCGCCGCTTGAAGGAAATGGAAGAAGAAGCCGCCG CTCTTCGTGAGATGCAAGCTAAAGTCGAGAAGGAGATTGGCACCGTTCAAGATCCGGCTGCTGCAGCTGCTTCACAAGCA AACAAGGAGGAGACAGATGGTCGGTCCGTTTTTGTTGGCAATGTTGATTATGCATGCACACCTGAAGAAGTGCAGCAACA CTTTCAATCATGTGGTACAGTTAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGG AATTTGTGGAAGCTGAAGCTGTTCAAGAGGCTCTCCGGTTGAATGAATCTGAACTGCATGGCCGTCAACTGAAGGTTCTG CCTAAGAGGACCAATGTTCCTGGAATGAAGCAATATCGTCCTAGGCGCTATGATCCTTACATGGCATATGGTTTCAGGAG GCCATATGCTCCTTCTCCATACTTCTACTCCCCTTATGGGTATGCTGCATGCCGCTTTTGTTTAATTCACGAAGGTTCCT AG
Protein sequence (LotjaGi4g1v0395600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEEEHEVYGGEIPDVGEMEADVDMSAADDDAAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGTVQDPAAAAASQA NKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQEALRLNESELHGRQLKVL PKRTNVPGMKQYRPRRYDPYMAYGFRRPYAPSPYFYSPYGYAACRFCLIHEGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 203 | 203 | 1.2E-123 | – | |
| PANTHER | 1 | 203 | 203 | 1.2E-123 | – | |
| Gene3D | 14 | 171 | 158 | 1.1E-27 | ||
| Coils | 31 | 65 | 35 | - | – | |
| SUPERFAMILY | 78 | 183 | 106 | 1.17E-26 | ||
| ProSiteProfiles | 88 | 164 | 77 | 17.08 | ||
| CDD | 89 | 160 | 72 | 1.16045E-47 | – | |
| SMART | 89 | 160 | 72 | 3.1E-21 | ||
| Pfam | 90 | 158 | 69 | 1.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0395600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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