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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0398600 |
| Transcript ID | LotjaGi4g1v0398600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PITH domain-containing protein 1; TAIR: AT2G25950.1 PITH domain protein (DUF1000); Swiss-Prot: sp|Q9GZP4|PITH1_HUMAN PITH domain-containing protein 1; TrEMBL-Plants: tr|I3SMC1|I3SMC1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0398600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77619441..77623057) extracted from Lotus japonicus Gifu genome v1.2.
GTATCCAAAACAGATCTTTCTTTTTTGTCTGAGAAAAACGACCGAATTGATGTGCGTCGTTTTGATTTTGAATGATGTGT GAAACAAACTTAAACCCCAATCGAAGAGAAAGGAATCAACGATTTCTTTCTTGTGGTTCCGGTGAAGATGTCGTGTTTGC ATGATCACAGTTGCGAAGACCATGATTGTTCCACTGACTGGTCTCTCTACAAGCACATCGACCTCTCTAAGGTTTTTTCC TCTCGCTCTCACTCTCTTGAATTTGAACTGAATGATTGGCCTCTAACAATGCTAGCTCATCCAATACACATGTTTCAGGT ATCTGCTCTCAATGAGGCAACACCAGGAAGTGTTAAGTCAGTTTTCAAAGCTTGGGAAGACCGTTTGAATTCTTCTGGGG TAATGCTTTCAGCTCCAGTTGCTACATATCAATATTTAAGATTCATTTTTCTGCAGTTTTGTACCCTCTTTAACATGTAA TAATATGTTGGTTTTAACAGGGTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTATTCATTCCGTAAGTTGCT ATGCCCTACACTCATCTTATGTTGTTGTATAAACATGCTAATAATCTAAATTCTCATTAAGATTGAACTGAACTATGTAC TATGATTCATGTGATATATGGGTTGATGTTAAAAAGGAAAAGAAGTGTATATTTTCTTAATAACAATATATGCATGTGTC AGTGACTTTGTATTTAAATGTGTCTTGATTAGTGCTTCCTTTTGTTACTAGTGTTTTTCTTTATGTTGCCTACCTTGAAG TTTTGTATGATCTCACAGTGACTGTAACATTTTCAATTTTGATTTACAACACTGGTCTTGTAACTTCTTACGTGACTTGT TATGCTTCTGTGATAGATTTACTTCAGATGTCAAGATTAAGAGCATATCTATTGTTGGTGGAGCTGATGGAACAAGTCCT TCCAAGATGAGAGCGTAAGTTGTTATGGTTTTGCAGCTGCTTATTGCTCTTGATTATCTTAGTAAGTTTTTGGCATTGAT TCCTGAAAATAATTGTGTTTTGCTTTGGCATCAACTTTATCATTTTGCTATTTCAAATGTTCCTCTTATGGAATTTATCA TTTTAGATTGTTTCACAATTATGATATATATTTGTCTCCTCTCAAGCCCAGCCTGTGAGATTTATTTGGATTATTCTTAT GGCAGACTGATTTTAGATAACCATCTTCGCTGTCATACATTCCCCCCGTTTGCTATGTTGTTTAATGCTCATGCACTTTT TGCCTTGATAATTGGATCTCAGCGTAATTAAGATGAATATCTTAGAATGCTCGCACAAATGAGCTTTCCTATGCTTCCTT TTATGAGGTGACCATTTTTCTTTTGTTCATATGTAAATATATCGGGGCTGGGATTTAACCTCTGGAAGAAAGGTCGTAAA ATGAAAGATGAAACTAGCAAATAAGGACAAATCTGTCATGAGTTAACTGTTTCCAAAGTTTAAACTGTTGGGTGAAGACA AAATGAATGATTTTATTTTATATATCTAACGCCCCTCATGCAAGAGCCCGTTGGCCTTAATTTGTCGGGCAACTGTGGTA CAACGTTTGTCATCGGATGCCCAATTGGTTCTTGTGTAGAGGGTAGACAACGCACATGCCCGCCTACATTGTGCTGAAAT TCCAGTTTTATTAAAATAATAGGGGAAATGAAGATCAAACTCCAAATTACTGGGTCATAGAGGCTTAAATACATGTCATG AACTAGCTATCCTGAAAGTTTAAGTTGTTGGGTAAAGATGCGTGAATGATTTTATATTATATTTCTAACTGAATATTTTA TCAAGCTCTTTTATATGACTGAGTTTCACATAATGGTAACACATATAGTGTTCTGGACCAATTAGGCTTATTTCACCTAT TTTCTCAGTACCTAACAATCAGTAGATGCAATACCACAAAAATCCAAAAAAATATTTAATTGCAAATATTCTTTTACACA AAAGGCTAAACCATCAACATGAATTAGGTTCATCAATCGAGATGGTATTGACTTTTCAGATGCACAAAGCATGCAAGCCA TTCAGGTATAGTTTTTTCTTAAGATTTTCAAGGAACTAATTAACAAATCCACACCAGTTTGTATGATACAGTTTTTTCGT TTTTAAAGGAATGGGATTTGGCTGAAAATATGCAAGGAGTATTGGAATACCAGACAAGGTAATAATTATATACTGCTGAA TTTATTTATTCTATCCCATTGGCCTTGTCTGCAAACACTTGTGCCTGAAAATATTCTGAGATATTCCATACGGCAATAAT CTGTGTATGCAATTCACTTCCCATGTGATTTAATGTTTTGTATTCATTATTCATATTCATATAATATCACTCAATATAGG TAATATTGCTCTGTGTCATTGGAGTTGTCTTTTGTCTCTACCATCATGGTTTTTAATGTATCTATCCATTTGATTAGATA TTCTAAATTTCAAAGTGTTGGAAATATTACATTGCACTTTCCTGAGAGTTTTGGAGGCGACACAACTAAAATACACTACA TTGGCTTTAAAGGCGAAGCTACTCAGGTACTTCAACTGCCAAATCCATGGTTACTTATTGTTTATCATCTAGTTTGACTG TCTGAGGTCTAACTACCAACTTCCTTGTTTATTGTATAGTTAAAAAGGGATGTTGTTGCTACTATCGTTTATGAGATTAC GCCAAATCCTTCTGACCACAAGTAAGTACTGAACTATTGACCTTATATTATATCAGCACATTACTTTTATATCCATCCAT GACATTCATTCGCAGAGATTAGTAATCTTGAAGTCTAATTTACTTTCTTGAAAAAACTGGTGGGAACTCAACAATGATGT TAAGTTTCCAAATTTGGCATTTTTATGCAAGTCCTTACTTAATTGCATCTTGTCTTATTAGCTAATCATAAATCATTCCT CCCTAGAAATTGTCTTCCTCATGCTCATTGATCTTAGTTTATGCATTGCTTCTGCAATTGGTTGGTTTTAATCCCCTGAA ATTTCTAGAACATGTGAAGGATAGTTCATGGTTCATTGGGTCAATTTAGAGGCACCAGCTCAAGATTTAAATACATTTAT TGGTGTTAATTCTCATTCCAAATGCTGCTTTCATGATCCTTTTTTTTATGTTTCATATGAAGCATATTTTTTTATGTTTC ATCTGCTACTTTGTTATAGTCGTTTTTCCTTACTAATTGACATGAATTCTTCTGTAGGACGCATGCTGAAAGTGGCGGCG GTCTTTCGCATGTCGGTTGAAATACTTTTGGATGATGTTATTTCATTACCTCCCCAACTTCAAAGACAAATAATACAAAT AATTTGCTCCAGGAGTGTATGTAAATTACTAAATTCCTTGTGAAATTGTGTGGCTACTGTGCAGTTTGATCGATAGATGA ATATATGCTGTTACGACGTTGTTATGAAGTTTTTTAATGCTTTTAAATTTAAAATGAAGGTATCTCCAATTATAACTTTA TTTATCACCAATTACAATTTTATTTTTTAAATCTGTAGCAGTATAAGGTTAATAAATCTCTGAAACCTAAAAAAACTGAA ACATGTGTAATAGAGAA
CDS sequence (LotjaGi4g1v0398600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTGTTTGCATGATCACAGTTGCGAAGACCATGATTGTTCCACTGACTGGTCTCTCTACAAGCACATCGACCTCTC TAAGGTATCTGCTCTCAATGAGGCAACACCAGGAAGTGTTAAGTCAGTTTTCAAAGCTTGGGAAGACCGTTTGAATTCTT CTGGGGGTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTATTCATTCCATTTACTTCAGATGTCAAGATTAAG AGCATATCTATTGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGCGTTCATCAATCGAGATGGTATTGACTT TTCAGATGCACAAAGCATGCAAGCCATTCAGGAATGGGATTTGGCTGAAAATATGCAAGGAGTATTGGAATACCAGACAA GATATTCTAAATTTCAAAGTGTTGGAAATATTACATTGCACTTTCCTGAGAGTTTTGGAGGCGACACAACTAAAATACAC TACATTGGCTTTAAAGGCGAAGCTACTCAGTTAAAAAGGGATGTTGTTGCTACTATCGTTTATGAGATTACGCCAAATCC TTCTGACCACAAGACGCATGCTGAAAGTGGCGGCGGTCTTTCGCATGTCGGTTGA
Protein sequence (LotjaGi4g1v0398600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSCLHDHSCEDHDCSTDWSLYKHIDLSKVSALNEATPGSVKSVFKAWEDRLNSSGGHLESNEGDPELLVFIPFTSDVKIK SISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWDLAENMQGVLEYQTRYSKFQSVGNITLHFPESFGGDTTKIH YIGFKGEATQLKRDVVATIVYEITPNPSDHKTHAESGGGLSHVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 196 | 194 | 1.6E-80 | – | |
| PANTHER | 3 | 196 | 194 | 1.6E-80 | – | |
| SUPERFAMILY | 6 | 167 | 162 | 8.5E-46 | ||
| ProSiteProfiles | 9 | 184 | 176 | 59.06 | ||
| Gene3D | 10 | 177 | 168 | 9.4E-41 | ||
| Pfam | 20 | 167 | 148 | 4.7E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0398600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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