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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0403700 |
| Transcript ID | LotjaGi4g1v0403700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q75HY5|RSLE3_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 3; TrEMBL-Plants: tr|A0A151QLH1|A0A151QLH1_CAJCA Putative AC transposase; Found in the gene: LotjaGi4g1v0403700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78042341..78045137) extracted from Lotus japonicus Gifu genome v1.2.
CCAAACCGCGCGCGCAAATCTCCCTCCCAAAATTCTCGCCATTTGCAGGAACAAAATGAAATCTCACTCTCACTTTCTCG CTTACTCTCTCTCTCTCTCTCACAATCACCGCAGGTATTTTCATTTTCATTTTTTCTACCATAAATTTGTTAACGAAATA TTTGTGTATGTTGCTATTCATAGTCCAATGATCTGTGTATCTCTTGTTAATGTTGTTGCTGAATGCTGATGATTTCTTGA TTTGATTCTTACACTGTGATTTCAATGCGCTAGTTCTAGGGTTTTTCATTTGATTTGCTGTGTATGGAGGAAGAGGGTTG GAATAGTGAGAGTGATTCTACTAGTGTTGGAAACAATTGCCAAGTTTTGGAACCACAAATGAAGAGACCTAGAACTCTTC AAGGCCTGAAAAATCACAATGTTGGGGGGGTTGAAAGGAAGATTGATCAGAAGGTTGTTCATGAGTTCATTGCGCAAATG GTCACAGAACATGATCTTCCCTGTGAGTTTGTTGAGTGGAATGGATTTCAAGCACTCACTAAGTACATTTCGTCTGATCA GGCTCAGTGTGTTTCTAATTCTAGAGATTATGTTGCTGCTGATGTGATGAGGGTTTACTTGCTTGAAAAACAGAAGCTCA AAAGGGAATTGGCTAGTGTTCGCGGGAGATTGTGTTTAACCTTTCGACACTGGACTTCTGAGGCTGCTCATGGGTATTTT ACTCTAACAGCTCACTATGTAGATGAGGATTGGAAGTTAAATGCAAAGTTGTTGAATTTCGGTCACATGGCACCTCCACA TAGTGATTTTGAGCTATCAAGAAAGTTGGATCGTTATCTGTGCGGGTGGGGGATAGAGAGGAAGATTTTCTCTATTACTG TGGATAATGCTTCTGCTTCTGCTTCTGCTTCATCCAATGATGAATTGCAGAACTCTAAAGAAAGACCTTGCTATTGGGAT GGTGTGCTGAGTGATGGAGAGTTCTTCCATTTTAAGTGTGGTGCTCATATCTTGGATTTGATTGCTCAAGAGAGTTTGAA GGTTGTGAGTGATTTCACACACAAAATAAGGAAGAGTGTGAAGTATGTGAGTGTGTCATTCACGAGGTTGAAACAATTTT ATCAATATGTTGAAGAAGTTGGTGGTATTGATACTAAGGATGGCTTGCATTTGGATGTATCGGGTAAATGGAATTCCACT TATCGGATGCTTGAGAGTGCAATCAAATTTCGCCGTGCCTTTGAATGCTTGCGTTCTGATATGAAGTATAAGCACTGTCC AACAAATGAAGAATGGGAAAGAGGAGAGAAGATCTGCAAATTCTTGAAGGCTTTTTATGAACTTTCTAGTAGGAGTTATG GATCTACATGTCGTACAATCAACCTTTATTTATATAGAATTTTGTGGATAATAGAGCTTTCATTGAGAAAGATGAAGTTG AGGGAAGATCGTGTGATAAAAGATATGGCTGGAAAGATGCTGGACGAGTTTGAAAAGTATTTGAGTGAGTATAGCATGAT TCTTGCATTTGCTTTTGCTCTTGATCCTAGTCGGAAGCTTAAATATTTGGAGGATGCATACTACAGATTATATGGTGATA TTAATGTGGCTAAAGATAAGGTGAACAATGTGAGGAAAGCTTTATCTGCTCTTTTTAAGGAATATGCCAACAAAGGTGCA TCAACTTCAAGTAATTTGGATTCACGTGTTACTATAAGGAAAAGCGGTTCGACTATGAGCGATCCGCTAATGGATTCTTG GATAGTAAGTTTATGTCCTTTGTTTCTTTTTTATTGTTCTCTTGTTGAGGCTATGTTTGTATACTCATTGGCACTCGTTT CGAGATAAAAAGTGAACATAAGACTTCTTATGGATTGAAATGAAAGTTCATTCACATTGAGCTCAATTGGATCTAAAGTC TAAACACACACCTAATATTTATCTTATTTTTGTCTTTGATTGAAATGTCTTAGGAACATTGTGAAAGGGAGATACAAAAA AAATACGATGCTGGAATGACTCAACTTGATCTGTATTTTGAAGAGATACCATCAGATTATGGTTATAAGACTGCCTTAGA CTATTGGAAAAACCGCAGTCATCAATATGTTGATGTTGCACTGATGGCCAGAGATGTATTGAGCTTCCCAATATTCGCAG TGGCATCTGAATCCGCTTTTAGTATTGGTAGTTCTATTTTGAACAAGTATAGAAGTTGTATGCTTTCGGAAAATCTGCAA GCTCTCATATGCTCCCATAATTGGTTATATGGATTCTCACATACTGGTAAGTTTTGTTATAAATGTTGTAATTTTTTTAA TTCGTTTCCCATTACAAATATTCATTGATTATTATCATTATTAAACTTGGTTATATTATGTTGTGTCTATATACAGATCA ATTTGGAGATATGATGGAGGGGACAAAGAGAATTGAGATAAATCTATCTAAGCTAGATTCAAATGTTATTGTTAAGTATG AGAGCGAGGATGAAGATTGATATGTTTGAACTTTCAAGGGTATGTTTTGACATATGACATGTAGTTGGTGTTTATAATCT TTACATGCGTTGGTATTTTTGTCCAACTTGGATTCCACAAGTTCTGAGGTATAATGTTTTGGATTTTTTGTCCTCCCAAA GGCTAGATATGGGTGAAGATGGGAGGTTAAGGACAAAATGTAATGCATGTTACCAATGGTAATCAAATGATCAATAGCAA AACGAATTTCCCATGTTGTCACAAAGCAGAGATGTGATTGAGTTGAACAAAAAGAAGCTACAGAATTCCCAATTTGT
CDS sequence (LotjaGi4g1v0403700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGAGGGTTGGAATAGTGAGAGTGATTCTACTAGTGTTGGAAACAATTGCCAAGTTTTGGAACCACAAATGAA GAGACCTAGAACTCTTCAAGGCCTGAAAAATCACAATGTTGGGGGGGTTGAAAGGAAGATTGATCAGAAGGTTGTTCATG AGTTCATTGCGCAAATGGTCACAGAACATGATCTTCCCTGTGAGTTTGTTGAGTGGAATGGATTTCAAGCACTCACTAAG TACATTTCGTCTGATCAGGCTCAGTGTGTTTCTAATTCTAGAGATTATGTTGCTGCTGATGTGATGAGGGTTTACTTGCT TGAAAAACAGAAGCTCAAAAGGGAATTGGCTAGTGTTCGCGGGAGATTGTGTTTAACCTTTCGACACTGGACTTCTGAGG CTGCTCATGGGTATTTTACTCTAACAGCTCACTATGTAGATGAGGATTGGAAGTTAAATGCAAAGTTGTTGAATTTCGGT CACATGGCACCTCCACATAGTGATTTTGAGCTATCAAGAAAGTTGGATCGTTATCTGTGCGGGTGGGGGATAGAGAGGAA GATTTTCTCTATTACTGTGGATAATGCTTCTGCTTCTGCTTCTGCTTCATCCAATGATGAATTGCAGAACTCTAAAGAAA GACCTTGCTATTGGGATGGTGTGCTGAGTGATGGAGAGTTCTTCCATTTTAAGTGTGGTGCTCATATCTTGGATTTGATT GCTCAAGAGAGTTTGAAGGTTGTGAGTGATTTCACACACAAAATAAGGAAGAGTGTGAAGTATGTGAGTGTGTCATTCAC GAGGTTGAAACAATTTTATCAATATGTTGAAGAAGTTGGTGGTATTGATACTAAGGATGGCTTGCATTTGGATGTATCGG GTAAATGGAATTCCACTTATCGGATGCTTGAGAGTGCAATCAAATTTCGCCGTGCCTTTGAATGCTTGCGTTCTGATATG AAGTATAAGCACTGTCCAACAAATGAAGAATGGGAAAGAGGAGAGAAGATCTGCAAATTCTTGAAGGCTTTTTATGAACT TTCTAGTAGGAGTTATGGATCTACATGTCGTACAATCAACCTTTATTTATATAGAATTTTGTGGATAATAGAGCTTTCAT TGAGAAAGATGAAGTTGAGGGAAGATCGTGTGATAAAAGATATGGCTGGAAAGATGCTGGACGAGTTTGAAAAGTATTTG AGTGAGTATAGCATGATTCTTGCATTTGCTTTTGCTCTTGATCCTAGTCGGAAGCTTAAATATTTGGAGGATGCATACTA CAGATTATATGGTGATATTAATGTGGCTAAAGATAAGGTGAACAATGTGAGGAAAGCTTTATCTGCTCTTTTTAAGGAAT ATGCCAACAAAGGTGCATCAACTTCAAGTAATTTGGATTCACGTGTTACTATAAGGAAAAGCGGTTCGACTATGAGCGAT CCGCTAATGGATTCTTGGATAGAACATTGTGAAAGGGAGATACAAAAAAAATACGATGCTGGAATGACTCAACTTGATCT GTATTTTGAAGAGATACCATCAGATTATGGTTATAAGACTGCCTTAGACTATTGGAAAAACCGCAGTCATCAATATGTTG ATGTTGCACTGATGGCCAGAGATGTATTGAGCTTCCCAATATTCGCAGTGGCATCTGAATCCGCTTTTAGTATTGGTAGT TCTATTTTGAACAAGTATAGAAGTTGTATGCTTTCGGAAAATCTGCAAGCTCTCATATGCTCCCATAATTGGTTATATGG ATTCTCACATACTGATCAATTTGGAGATATGATGGAGGGGACAAAGAGAATTGAGATAAATCTATCTAAGCTAGATTCAA ATGTTATTGTTAAGTATGAGAGCGAGGATGAAGATTGA
Protein sequence (LotjaGi4g1v0403700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEEGWNSESDSTSVGNNCQVLEPQMKRPRTLQGLKNHNVGGVERKIDQKVVHEFIAQMVTEHDLPCEFVEWNGFQALTK YISSDQAQCVSNSRDYVAADVMRVYLLEKQKLKRELASVRGRLCLTFRHWTSEAAHGYFTLTAHYVDEDWKLNAKLLNFG HMAPPHSDFELSRKLDRYLCGWGIERKIFSITVDNASASASASSNDELQNSKERPCYWDGVLSDGEFFHFKCGAHILDLI AQESLKVVSDFTHKIRKSVKYVSVSFTRLKQFYQYVEEVGGIDTKDGLHLDVSGKWNSTYRMLESAIKFRRAFECLRSDM KYKHCPTNEEWERGEKICKFLKAFYELSSRSYGSTCRTINLYLYRILWIIELSLRKMKLREDRVIKDMAGKMLDEFEKYL SEYSMILAFAFALDPSRKLKYLEDAYYRLYGDINVAKDKVNNVRKALSALFKEYANKGASTSSNLDSRVTIRKSGSTMSD PLMDSWIEHCEREIQKKYDAGMTQLDLYFEEIPSDYGYKTALDYWKNRSHQYVDVALMARDVLSFPIFAVASESAFSIGS SILNKYRSCMLSENLQALICSHNWLYGFSHTDQFGDMMEGTKRIEINLSKLDSNVIVKYESEDED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 48 | 585 | 538 | 1.8E-100 | – | |
| SUPERFAMILY | 109 | 585 | 477 | 1.9E-56 | ||
| Pfam | 354 | 454 | 101 | 2.4E-18 | ||
| Pfam | 520 | 585 | 66 | 1.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0403700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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