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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0404900 |
| Transcript ID | LotjaGi4g1v0404900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mediator of RNA polymerase II transcription subunit 28; TAIR: AT3G52860.1 mediator of RNA polymerase II transcription subunit-like protein; Swiss-Prot: sp|Q9LFA5|MED28_ARATH Mediator of RNA polymerase II transcription subunit 28; TrEMBL-Plants: tr|A0A0B2R684|A0A0B2R684_GLYSO UDP-galactose transporter 2; Found in the gene: LotjaGi4g1v0404900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78150593..78154191) extracted from Lotus japonicus Gifu genome v1.2.
AAATAATCTCATCTGTCTCGTCGCTGCCCACATCTAGCTTTGCCGTCTCCCCTCTTGTCTCGTCGCTCTGCTCCCCGCCG CCGCCGCCTGTAGGATCGGAGGCTACACCGGAGTTTCACGGGCACCCGTTGGCGTCGCCGTCACAGACTTCATCTCGCGG CTCCTCCCCGTTGCTTCACAACTATGGGTGACCGACAATTAGTTGAGCAACAGCACAGTGTTGATCCACAACTTCCATCT TCTCCTCCTCCTCCATCAAAGGATGATATGGTTTCATGTGTTATGGCTCTGGAGGCTGCTTTACTTCCCTGTTTGCCAGC CAGAGAGCTTCAGGCAATCGACCGTTCTCCCCACCCTTCACATCAAAGTGAGTCAAATTTTCGATTTCCATTTATACTAC AAGTTTTATGGTTCTGTCTAAATGTTTGTTAATTAGGATGTAAATGATTGACAATTGGATCAAGATAATTCAAATGAGAT ATTAATTTGATTATTTGGTATTCTTGTGTCTATGTGATGTTGCACCTAGAAAACTTGTTAATGGTGGATAACGTAGCGTA GCGGCAAGCCCAAAAAATGCTATTTCGAGAACTATTGCGGGCAAATAGCGGACAATAGCGGTGAATAGTGGAGTAGCGGT GAACCCCCAGGGCGCTATGCTACATCGCGCTATTAACAAGCCTGGTTAGACATATCACAGCCAAATGATGGTCCTTGATA ATTTAACGAAAGGAATAGACATGCTTATTGCTCACATTTAAATATATGGAGGAATCTTGAATGAAGATAGTATTTATCAA TCAATCAAAAAAGAAAAAAGAAGATACCATTTGTCACAAGAAGGTAGAGAAGTCAAGAAGTTATTTACATTAGTGATCAA CCATTAGATTGATTAAGGAGAAAGTGAGAGCTAGAAAAGGCCCAACAAAAAGTTAGAGGGGGTAATTTCCATTGTTCCAT ATCCTGTTTACACTGGTCGACTTTAAATTGATTTTTTGATTAAAGTTGTGTCAAAGCCAGTCAGGGAATGAATGCCTAGT TAAGTAGAGCCCTGTCTATAGATGTAAAAGTTTTGAGTGCTGAGTATGTCCTTTTTCGTATTCAATTCAATTTATTACTT AGTTTTTCTTTTCCGAAATATGCACATTGCACACTATATTGAAGTAAAAAAAATGTCATTCCTTATATTTTTATTCTTTA TATAAAAAATGTTGTACCTCCTTAATTGGCTGCTCAAGAGGTTTCAAGTTTTTATTATGATTACTTTGTTGTTATGTACT ATGTAGTTGTTGAGTGTCTGTTATCGCGGTTTTCTTTTTCCTTTCCGAGTCTCCTACCATTACTTCGGAGAAGCTGAACG GGAAGAGTGGATTGGAGTCATGCCGTTGTAACTTGGTTTTTGGAACAAGGGTTATCTGATTACCTGTAAATCCAGTTTCA TTTGTCACCTCTTCCATCCTTACCTTTTGTCTGATGAGTGGATGTAAAATGATATGCCACGTGGTAGTTTTGAGGTGTTC GGTTAAATTGTTAAAAAAATGGACCAGACTGTCCTGACCTTCAAATTTTAAAGTTGTGTGCCCTTGCGTCAATAATATTG GCCCTGTTATGAAACATAGTTGTTGATAGTGTTCATTGTTTGCAAGTATGCTAACATGATCATCTAGGGGGAGAAAAGAA AGATGAAAGAAGTTCCTAAGATGACTTTGCATTTGATAAATAAATTTGTAAAGAACCATATTAACACCAATGTCTATTGG CTTTGATGCAATCTAATTGAATGATTTAAAATGACATTGGCTTTGGATGTAATTCAGTTTTTGATGTGTTTCCATTTCTT GATTAATTTCATACCTTGTGGGGGCTTGGGCAAAAAGGTTGCATTTATTTAGTTATTGTAGCCTTATCTTAAGCTCATAT GGAACTCTTGTGGTTTGACTGCAACATTAGAAATGAAAATTTTCATCAACTAACATCTAGCTGTAGAACCATAGTGCTGA AATTTGCTATAGAAGCTAAATAGAAAGAGATTAGGTCACTGTGAAAAGACTGAATGAAGTCTAACAACAATTGCAAGAAG ATTTAAGGTCCCAGGGATGTAAGCCTGTAACTTATACTTAGAAGAGGAACATGTCTTTGCTCTAGTAATTTAGTTCCAGT TAGAAGAGGAATTTTGTCTTTAGAAAATGGTTTTCTGACCTTGCAATGCATGGTAAAAATAAATGCATGGTGAAAATAAC TTTATTAAACCTAATGGGGCTTTCCTTGTTTGGTTTTCTTCCCCAGTTGATGTGGATAAGCATGCAAGAGATTTCATGGA GGCTGCCAAGAAGCTTCAGCTTTACTTTATCAGTCTGCAGCGCGAGGATAAGCCAACAAAAGCTGAAATGCTTAGAAAGG TATGGTAACTACACTGAAGTGTAATTCAGTGTAGTCAGAGAGACTGTCTTATATCATCACCTAATCCTCTGTTATATCTC TTGTCTAAGCAGGAGATTGCTCTTATGGAAGATGAACTTGACAGAAAAACTGAGCTGATTAAAAAACAAGAAAATTTAAT TCAAGAGTGGAGAAAAGAGCTGAAAGATCAGTTGGAGAAGCACAATGTTGAGTTGGACAGGGTTTAGTGTAAGCTTTTTA GCTCATGGCCTCCTTTAAATATTTATTAAGGGTGGCTGTCCGTTACCCTCTCTAATTTATGAGGTTATGTTGCCCTCTCC TTTTTAATTACTAAAACGCTAATTTGAAGACTCATTATTATCTGTTATGAAATGATACTTAGTACACTAAGCAATCTTTT ATTGGTCAATTATGAGATATGGCAGCAATCAGAAGGGTATGGAAAAAAATTTCTTAAAAGTTCAGGTCTCAGGAGCACTT TTGTTGTCTCTCTCTCTCTCTCTGCTAATTAGTAAGAAATACGCTATCTTAGCAACGAAATGTGATCTGTTTGATGAAAT GGTTCAGAAATCGGTTTGTTGATTATTGATGTCAACAGTGGAATCATCCAAAATGGATGAAGATAAAAGCTGAAGAATGT TATGACCTTTGTTAAAATAGCTAACCAAAAAGCTATAGACAGATTGCAGATCACATCAAGTGGAAAATGCCATTTATGGT AAAAGATCACATATGGCTGCTTCTCTTTGGAACACATCTAAACTTTCTAGTGGTCTATTGATTTTTTTTCGTCAACATCC TGCTTTGTATTATTGATTGAATCTCAAACACGTATGCTAACGTATCATCCTAACTTTCGAAGGTCACACACACGGTAGCT TCTCTTTCATGTGATGTGAATGTGCTGGATGGAGCGGATCTTGTTGATTTTGAAGGGAAAAATTATCTGATATTATCTCC AGATCAAAGTCATTTAAATTTTTTTGATCATCAAATTTAAATATGATCCAATCAATTCAATTTAAGCACTTCTGTTGGAC TAGTTTCGGTTTTAGTTTTTTCAAATGAAATAATTCAATAATTTACAAAAAAAAAATGAAAATACGAGCTGAGTTTGGGG GTAAGATTGAGAAACACGAAGTTGAAAATATGAAATCAACCCTATCCCTAACATGTTTGAAAAAGCCTAGTAAACCAAT
CDS sequence (LotjaGi4g1v0404900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGACCGACAATTAGTTGAGCAACAGCACAGTGTTGATCCACAACTTCCATCTTCTCCTCCTCCTCCATCAAAGGA TGATATGGTTTCATGTGTTATGGCTCTGGAGGCTGCTTTACTTCCCTGTTTGCCAGCCAGAGAGCTTCAGGCAATCGACC GTTCTCCCCACCCTTCACATCAAATTGATGTGGATAAGCATGCAAGAGATTTCATGGAGGCTGCCAAGAAGCTTCAGCTT TACTTTATCAGTCTGCAGCGCGAGGATAAGCCAACAAAAGCTGAAATGCTTAGAAAGGAGATTGCTCTTATGGAAGATGA ACTTGACAGAAAAACTGAGCTGATTAAAAAACAAGAAAATTTAATTCAAGAGTGGAGAAAAGAGCTGAAAGATCAGTTGG AGAAGCACAATGTTGAGTTGGACAGGGTTTAG
Protein sequence (LotjaGi4g1v0404900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDRQLVEQQHSVDPQLPSSPPPPSKDDMVSCVMALEAALLPCLPARELQAIDRSPHPSHQIDVDKHARDFMEAAKKLQL YFISLQREDKPTKAEMLRKEIALMEDELDRKTELIKKQENLIQEWRKELKDQLEKHNVELDRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 2 | 143 | 142 | 3.2E-71 | ||
| Coils | 94 | 135 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Mediator complex | A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
Expression pattern of LotjaGi4g1v0404900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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