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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0415200 |
| Transcript ID | LotjaGi4g1v0415200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MACPF domain protein; TAIR: AT4G24290.2 MAC/Perforin domain-containing protein; Swiss-Prot: sp|Q9STW5|MACP2_ARATH MACPF domain-containing protein At4g24290; TrEMBL-Plants: tr|G7LFS3|G7LFS3_MEDTR MACPF domain protein; Found in the gene: LotjaGi4g1v0415200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79062711..79069173) extracted from Lotus japonicus Gifu genome v1.2.
AGACATTAGACTTCTACAACTCCTCCTTCTCTTCTTCAATTCTCTCGTGAACTCTTCGCTTTTCGTTTTCTCTTCTCCTT CCCAAATTCGATTCATCTGAACCAAAATCACCAACCTCTGTTTCCCAACTCAGTTCATGAGCGAGCACTGATTGATTCTA TACAAGAAGAACAAGAAGAAGATTACAGTGATGATGATGATGAACAACAACAACAACAAGAAGATGAAGCGGTTAGAAGC AGAAGATGGCATCAAGTGCATTGGTTTAGGTTTCGATCTCACCAACGATCTCAAGCTCAAATTCTGCAAAGCTGACTCCA ACAGATTGATCACCATCGACGACGACAACAACCTCCCAGGTCACGTTTCCACCCCCAATGTCCCCAAATCCATCAAGTGT GATAAAGGTGACCGCATGAGATTAGGCTCTGATGTTCTCTCTTTTCAGCAGGTATATCAATCAATATATACAACAAATTA ACCTCCTTTTTTTTCTGGGTCAAAGGGTATTTTTTTTTTTCAATTTCTCTTTTTGGGGGGTAATCATGTTTGTCATGTTA CCAGAAAGTGTGTTCCTTTATTAGTTTTAGCTCAAGTATCTTATATGGGTAGAGGGAAGAAAATTGTGGAATTTTTGAAG TTAACTTGTAGTATGATGATGTTCTTGCTTTGTATAGTGGATTGTTTGGCTGACTAGTTATGTGTACCTTGGTTTATTTG CTGCTTTTTAGATGTCAGAGCAGTTTAACCAGGAGCTGTCACTGTCTGGAAAGATTCCGACGGGCCATTTCAATGCTGCA TTTGATTTTTCTGGAGGTTGGCAAAAGGATGCTGCAAATACCAAAACTCTTGCTTTTGATGGTGTCTCCATCACACTCTA CAGCATTGCACTTGAGAAAACTCAGGTTGGTCTTCGCGATCATGTCAGACAAGCTGTTCCTTCGTCCTGGGATCCGGCTG CGTTGGCGAGGTACTACTTCTGTGAATTCAGATAAATAAATGAGTCCTGTTGCAATGTTTTAGTTGTATGTAGCTTGTTG ATAATCTTTTAATCTTATCATTTTAGGTTCATTGAGAAATATGGAACCCATGTTATAGTTGGGGTGAAATTAGGGGGGAC AGATATAATTTATGCAAAGCAACAATACTCATCTCCTGTCCAACCTGTTGAAGTACGGAAATTATTGAAGGACATGGCGG ACAACAACTTCTTAGGCCAGGCTGGACAGCATAACGCTCATGATGGGAAGTCTAATACCAAGGAAAAGGTTTGAACTTTA AAGTTTTTCATGTTCAGATTGCCCCATGTATGCTGATATTAAAACTAGTTTGTGAATACACGATGAGTTCATCAAGAATA ACTATAGGATAACACCAGGTTAACTTTGAAACTTTATCTTTTTACCTTGGTTCCAGAAGTACACACTGAGCATATGCATT TATCTGTGATCCAAAGGTGCCTATCGGACTTGAAGGAAAATTTACTATGTAGCCATAAGGCCAATAATGCTTTATGTGCC TAAATGTTAGATGGCAAAGTGCCAACAAGAACATAAGCTAAGTGTTGCATAGATATAGATAAGAATCTTACATGGAAAAG TGGATACGAGGAAAGATAAAATAAGTAATGAAGGTGTTGGAGATAAAGTAAGAGCAGAACCTATTGTGCATGGTGATACA AAAAGGAATATATGGTGTTTCATTTCATATCCTCCATTGAATATTTAAAAAATTGGGACCAACAATGTAGGTATTAAATG TTTTCTATGGAATCTGAATAATGCTGTGAAGAAAATGAGAAGATCAGATGAAATAAAAATACTATGAAATAAATCAAGAG GACTTTCTTTGAGATATATGGGTAGATCTCATTCATTTGTCAAAAAGCCATTCTACTTATTAACATTTACTTTTTTCTAA AGAAAAGATTACATTACCGTATGCAAACTTCCAGCATGACTTACATTTCCCCCTCTTTTTCCCTCAGTTTATGATGGATA ATGGGCTAGATTTCATGGGCATCCAACCTCGTTCCTACTATGAAGCAGAGGTAAGTACTTTATGTTTTTAAAATTTGATT TATGCCAGCTAAAGAATCCTTCTTATCACCTGTTGGGCTTTGACCTCTAGAATCAGTACTTGATTCACTTACCAGTCTTT TATAATTCAACTACTGTATCACATGAAAATAGCTGATTGAGTTGATTGTTAGGCTTTTAATTTGAAAAGTTCCTGTGTTG TGTACTTGTGTTGCAAATTATAACATTGAGCCTGTTTGGAAGGGGACCATCAAATTGTTTTTTTGTTGTTCAGTAGCAGC CTCTTTATTCCAACCAAAAGCAAAACAAATAAATGATACAAAGCGAAAAACACTTCAAGTATTCTTACTTTATTCCCCTT TTCATTATACATTTTAGGTGCAGGATATCAAGTTCATGTGCAAGAGAAAAGGTGGAAATCTGAAAAAATCTATGACCCAC AATGATTGGTGCCAAACTGTTTTGTCTCAGCCTGATCTGATAGCAATGTCATTCATACCAATAACATCTCTACTTGGTGG AGTTAATGGGAGTGGGTATTTAACTCATGCCATAAATCTCTATCTACGATGTAAGCAACTAAGCATAACTCCCCTTAATC ATTTACTTATTTACATTTGGCTTCAAAGCCTATGGTATCTATCTAATAAGTTGACCGTAAGATAGGATGATGTATTTTTT TGTTTTTTACATAAACTCTTTTGTCTTGGTTTAATAACATTTAACAAATAATCAAAGCAACTTCACTTAAAATGGAGGCC AGGGGCTGAAAATTAGTTACGTTCAGTGGTCTCTTACGGCCGCAGTGAAGGGGTTTCTTGGTACTTCCGTCTATGCATTT TGTAACTTTGAGCCTATTATTGACGTCACTATCACACTGATGATAGTAAGTTACACTATGAAGAAATTAACATCACAGTT GTAACTATCATCATCTCTGGTATTGCCAACAAACAACTTTCTGCCACTGAGATCACATCTTCACATTTTTCTATTATGAA AAGTGACATTGATTTTCTAATAACCATCCATCTAAATGCTAGTATGCAACCACTATCAATTCTGGTGTTATGCAACATTA TTGTTATCCACATTTTACCATACTCAGGCTCAGATAGTCATGTTCTTTTATTTGAGAATCTTTATTCTTTAGGTACTTTG GTTAGTTGGTCTGGATTATTTTGAGCATTGCATAGAAATCAGCTCTTGTTCTGTTCTATATGTAATGTCTTTCTTTCTAT GTTTGTAATTCATATCTATAAATTTCATGTGCATCACTTCTATATATACATTTGTATAATTCTTGTTATTCTTTAATTTA TATGTTAGATAAGTCTATGCTTCAATGAGTTTAGGTTTTTCCCTTCCAGTCCTTTGGGTAGTTTGACAGTTGTGAGATAA TGGAAATGAGATTTATGCTGGTAATACTTGCATTAGGTCCATCATTATTGTTTCACAGAAGATTTTCTATATTTTCTCAT TTATTTTTTCTGAAAATTTGTTGAGATTTATTATGAAAAAGTTAATGTTGTAACTGTAGTTTTGAAGTTGTCAACCTATG AAGTTAATTCAACATGCTCTAGAATTTCAATTCTTAATCCTTGAACTGGAGGTTCAAAAGAAAAAATGTCTTGTAGTACA ATTTAACCATCATCCGCTGTAACTTCTGACTGCAGATAAACCACCAATTGAAGAACTGCATCAGTTTTTGGAGTTCCAGC TTCCAAGGCAATGGGCCCCTGTATTTGGTGAGCTTGCCCTTGGTCCTGAAAGGAAGTCACAAAATACTGCATCGTTACAA TTCAGTTTCTTGGGTCCTAAACTCTATGTAAACACAACCCCGGTAATGCTGCCTGTTTTATACGGACCTTCTTTTTATCC AGTTAGTTTGTTATCTTTGTTTATTTTGTTTGTATAGTTAATTCATGTGGACATCCATGTTAATACCTGTCTTACATGTT GGTCCCCCCCCCCCCCCAAATTATATAGCACTAAAAGGGGAAAATGGGTCTTTCAAAGAGGTGTTATGTAGCTTTGTCTC TTATATAATTGCAACTTAGATTATGAGGATATTAAAATCGTTGACCTAGAACATCAGTATAAATAGGAGTATGAGGTCAA TTTTTGTATTATCACGGCGCTGTAGTTACAGCTGAAACCTATTGATAGAACATATTCTCTCCTTCCCCTTCTCTGTAATC CGTCAGCAGTCTTTTGAAACAGAAGGAAATAGCACCTGCAGTTTAGGATCATAGTTTGCTTTTGTAGTATGCATTTGTGC TTCATATGTTTGGATACTTGGTCATTTGTCACGGGCAGGGTAACTTAGTGCAATTATTCTCAACAAATGTGGAATAGGAT ATGTCCTCTGGTTTGTGCAGTTTCACATTTGTGGGTTTGAACTATTAGATTGGTCCATACTTTCTCTTTTTTAAAATTTC ATGACTGTCTCCTTAAGAGATTTTTTAACCACTCATCCAGCATTGTGTTTTATTCTCAGTAAGACAGGAGATTCTTGATC TAGTCCAGCGATGGTAAGGGAGGGATGCACATCAATCACAGGCACCTATGTTATTATGAATTAACTATTTAACTCTGTAA TCGTTGGCTCTTTTACTTAATTAGGTATTCAAGTTTGTGGCCCGTGAAAAATAGAAATAGTAATATCATATCATTTCTCC TGTTCCTGTCTCATTAATCATTATCGCATATTTCCAGGAAAATGAATGAATAGATGGATAAATTTCAAAACAAAGCCTTT ATTTTTGTATAAAACTATTAAATTTTAGTGACCAGGTTTCATGTTTCTAGTCGCCGCAAGTCATTCTTGTATCATATTTA CTTCTCTACCTAATATTCTGGTTTTTTTTTATACCAAAAGTCTAGTTAGAAATCTTTTATTGGCCCAATACTCAATAGTT GTTCGCGTAATAAAATCTTTTGTACATTATGTGAAAATGTGGTGATTAGACTAACCTTGAACTACTTACAGGTTGATGTA GGAAAGAAGCCCGTAACAGGCCTTCGATTGTATTTGGAAGGAAAGAAAAACAACTGCTTGGCAATCCACTTACAACACCT TTCCTCCCTGCCCAAGACATTCCAACTTATGGATGAGCCTAATGGGAATGTGCCTCACTCTTCTGAACGCAAATACTATG AAAAGGTCCAGTGGAAGAGTTTTTCTCATGTGTGTACAGCTCCTGTTGAATCTTACGATGAAAACTCTGTTGTGACCGGA GCTCGCTTCGAAGTTGGAGAATCTGGTCTGAAGAAAGTTCTGTTCCTAAGACTTCATTTCTCTAAAGTTGCGGGCGCAAC GTCTTTGAAGGCAGAGTGGGATGGTTCACCTGGCTTGACCCAGAGATCCGGAATAATCTCAACTTTTATCAGCACTACCT TCTCAGGTCCCCAAAAACAACAACCGCCACCACCACGACCATCAGATGTGAACATCAACTCGGCTTTGTACCCTGGGGGG CCTCCTGTGGCGGCTCAGTCAACTAAACTCCTGAGGTTTGTTGACACAACAGAAATGACCAGAGGACCACAAGACTCACC TGGCTACTGGGTTGTGTCTGGGGCAAGGCTTTATGTGGAGAAGGGTAAAATATCACTCAAAGTAAAATACTCTCTTAAAA CCGTGATTTTACCTGATGAAGAAACGTCAAGTTATTGAAAAAATATAATAGCATGTTTGAATCAACTTCTATTTCCTCAG AATCAATTCTGATACTCGAAAGCTACTCACGAAATCAATTCAGGTTTTAGAATCAATTGTGGAAGGGTTTCCAATCATGC TGTGAAAGATGCTCTCATCATATAAGTCCAAAGATACAGGCGTGTGTACATAATGTCCTATTTTTTTCCACTGTACATTT GCTCTATTCATTATAGGTTACTCCTTAATGTTGTAATTTTTTGTGCATACCCACACTTATGATCCTTTGGGGAATTCCTT GATGTAGTTTTGAGAAAAGCTTGTGTAATCATGCACATTACATCCTTTTGTCTGTATGTTTTGAATGTAGTTTTACATAT GTATGTGGCGTGGGTTCTTCCATGTAGACATTGATGATAAGGGCATTCATGTCAAAATCCAGGAGAAGTTGTTTGCTATT TGGTGTCAGTCACACAATGATGATAGGGATCAATGTTATTTCACTCTATAACTGTTGATTGATTCACCTTGGTAGAAAAA TAGAGAAACTAGTGGCAAAACCTGTTATTATAGCAAAATTCAGCAAAGTTCTCAATATCTATTTGAAGATATAACTATGT TATTACGTTAAGTTGTTTTAAATTCATCAAATCTTGACAAAGAAAAAGCAGATGCATAAAGGCCCAGTTTGGAAGAGCTT ATTTGAGCTTATCTGACAGCATAAACTCTTATGCCAGTGTTTGGGAGGGCTTATGCAAACAGC
CDS sequence (LotjaGi4g1v0415200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATGATGAACAACAACAACAACAAGAAGATGAAGCGGTTAGAAGCAGAAGATGGCATCAAGTGCATTGGTTTAGG TTTCGATCTCACCAACGATCTCAAGCTCAAATTCTGCAAAGCTGACTCCAACAGATTGATCACCATCGACGACGACAACA ACCTCCCAGGTCACGTTTCCACCCCCAATGTCCCCAAATCCATCAAGTGTGATAAAGGTGACCGCATGAGATTAGGCTCT GATGTTCTCTCTTTTCAGCAGATGTCAGAGCAGTTTAACCAGGAGCTGTCACTGTCTGGAAAGATTCCGACGGGCCATTT CAATGCTGCATTTGATTTTTCTGGAGGTTGGCAAAAGGATGCTGCAAATACCAAAACTCTTGCTTTTGATGGTGTCTCCA TCACACTCTACAGCATTGCACTTGAGAAAACTCAGGTTGGTCTTCGCGATCATGTCAGACAAGCTGTTCCTTCGTCCTGG GATCCGGCTGCGTTGGCGAGGTTCATTGAGAAATATGGAACCCATGTTATAGTTGGGGTGAAATTAGGGGGGACAGATAT AATTTATGCAAAGCAACAATACTCATCTCCTGTCCAACCTGTTGAAGTACGGAAATTATTGAAGGACATGGCGGACAACA ACTTCTTAGGCCAGGCTGGACAGCATAACGCTCATGATGGGAAGTCTAATACCAAGGAAAAGTTTATGATGGATAATGGG CTAGATTTCATGGGCATCCAACCTCGTTCCTACTATGAAGCAGAGGTGCAGGATATCAAGTTCATGTGCAAGAGAAAAGG TGGAAATCTGAAAAAATCTATGACCCACAATGATTGGTGCCAAACTGTTTTGTCTCAGCCTGATCTGATAGCAATGTCAT TCATACCAATAACATCTCTACTTGGTGGAGTTAATGGGAGTGGGTATTTAACTCATGCCATAAATCTCTATCTACGATAT AAACCACCAATTGAAGAACTGCATCAGTTTTTGGAGTTCCAGCTTCCAAGGCAATGGGCCCCTGTATTTGGTGAGCTTGC CCTTGGTCCTGAAAGGAAGTCACAAAATACTGCATCGTTACAATTCAGTTTCTTGGGTCCTAAACTCTATGTAAACACAA CCCCGGTTGATGTAGGAAAGAAGCCCGTAACAGGCCTTCGATTGTATTTGGAAGGAAAGAAAAACAACTGCTTGGCAATC CACTTACAACACCTTTCCTCCCTGCCCAAGACATTCCAACTTATGGATGAGCCTAATGGGAATGTGCCTCACTCTTCTGA ACGCAAATACTATGAAAAGGTCCAGTGGAAGAGTTTTTCTCATGTGTGTACAGCTCCTGTTGAATCTTACGATGAAAACT CTGTTGTGACCGGAGCTCGCTTCGAAGTTGGAGAATCTGGTCTGAAGAAAGTTCTGTTCCTAAGACTTCATTTCTCTAAA GTTGCGGGCGCAACGTCTTTGAAGGCAGAGTGGGATGGTTCACCTGGCTTGACCCAGAGATCCGGAATAATCTCAACTTT TATCAGCACTACCTTCTCAGGTCCCCAAAAACAACAACCGCCACCACCACGACCATCAGATGTGAACATCAACTCGGCTT TGTACCCTGGGGGGCCTCCTGTGGCGGCTCAGTCAACTAAACTCCTGAGGTTTGTTGACACAACAGAAATGACCAGAGGA CCACAAGACTCACCTGGCTACTGGGTTGTGTCTGGGGCAAGGCTTTATGTGGAGAAGGGTAAAATATCACTCAAAGTAAA ATACTCTCTTAAAACCGTGATTTTACCTGATGAAGAAACGTCAAGTTATTGA
Protein sequence (LotjaGi4g1v0415200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMMMNNNNNKKMKRLEAEDGIKCIGLGFDLTNDLKLKFCKADSNRLITIDDDNNLPGHVSTPNVPKSIKCDKGDRMRLGS DVLSFQQMSEQFNQELSLSGKIPTGHFNAAFDFSGGWQKDAANTKTLAFDGVSITLYSIALEKTQVGLRDHVRQAVPSSW DPAALARFIEKYGTHVIVGVKLGGTDIIYAKQQYSSPVQPVEVRKLLKDMADNNFLGQAGQHNAHDGKSNTKEKFMMDNG LDFMGIQPRSYYEAEVQDIKFMCKRKGGNLKKSMTHNDWCQTVLSQPDLIAMSFIPITSLLGGVNGSGYLTHAINLYLRY KPPIEELHQFLEFQLPRQWAPVFGELALGPERKSQNTASLQFSFLGPKLYVNTTPVDVGKKPVTGLRLYLEGKKNNCLAI HLQHLSSLPKTFQLMDEPNGNVPHSSERKYYEKVQWKSFSHVCTAPVESYDENSVVTGARFEVGESGLKKVLFLRLHFSK VAGATSLKAEWDGSPGLTQRSGIISTFISTTFSGPQKQQPPPPRPSDVNINSALYPGGPPVAAQSTKLLRFVDTTEMTRG PQDSPGYWVVSGARLYVEKGKISLKVKYSLKTVILPDEETSSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 7 | 331 | 325 | 18.623 | ||
| PANTHER | 9 | 601 | 593 | 0.0 | – | |
| PANTHER | 9 | 601 | 593 | 0.0 | – | |
| Pfam | 106 | 317 | 212 | 1.5E-29 | ||
| SMART | 124 | 319 | 196 | 1.5E-13 | ||
| MobiDBLite | 512 | 533 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0415200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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