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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0417200 |
| Transcript ID | LotjaGi4g1v0417200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial carrier-like protein; TAIR: AT5G07320.1 Mitochondrial substrate carrier family protein; Swiss-Prot: sp|Q628Z2|CMC3_CAEBR Probable calcium-binding mitochondrial carrier CBG00135; TrEMBL-Plants: tr|A0A072TU61|A0A072TU61_MEDTR Substrate carrier family protein; Found in the gene: LotjaGi4g1v0417200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79281339..79282691) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTACTTGTCAATCTGCAGGGATTGAAATTGATGAGGAGGAGCTTGCTCGCTTTGTGGAGCATGTTGATAAGGATAAT AATGGAATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTGCTTTATCCTCATGAAGCCACTATTGAAAATATATATCA GCATTGGGAGAGGGTGTGCCTTGTAGACATCGGAGAACAAGCTGTCATTCCTGAAGGCATCAGCAAGCATGTGCACAGGA GCAGATATTTTATTGCAGGAGGGGTAGCAGGAGCTGCTTCTCGCACAGCAACTGCTCCTCTTGATCGTCTAAAGGTGATC TTACAAGTTCAGACCGGAAATGCTTCTATTATGCCAGCAGTGATGAAGATATGGCAACGAGATGGTTTGTTAGGGTTTTT CCGAGGTAATGGATTGAATGTTGTGAAGGTTGCTCCAGAGAGTGCCATCAAGTTTTATGCTTATGAAATGATTAAAAATG TAATCGGAGATGGTCAAGGGAACAAGTCAGATATCGGTACTGCTGGAAGACTTTTTGCAGGTGGTATGGCTGGTGCTATT GCACAGATTGCTATCTATCCACTGGATCTTGTCAAAACTAGGTTACAGACTTGTGTTCCTGAAGGTGGAAGGGTTCCTAA GTTGCGCACACTTACAAGGGATATATGGGTCCATGAGGGACCTCGGGCTTTCTATAGAGGGCTTGTTCCATCTCTTCTTG GTATGATTCCTTATGCAGGCATTGATCTCACTGCCTATGACACCTTGAAAGATATATCCAAAACATATATTCTTTATGAC CGCGGTATGATATTACTGCAACTACATTATCTCTTGAACTTGCTGATTTTATTTTGTTCTAACAGCTTATGCTTTTTACA CTGATAGAGTATTCAACATTTGAAATTTAAACTTTCCATTATTTTTCTCCTTCATAGAAGAACCTGGTGCTCTGATACAA CTCGGATGTGGGACAATTTCAGGAGCTCTTGGAGCTACATGTGTCTATCCACTGCAGGTTATTCGTACAAGGTATAATGT TGTGCCAGAAGTGATGTTTTTCTCTGCACTCCTTGAGTTGGGGATGGTATCAGTTTTGTTCTTCTTAGCTAGTTTTCTAA TTGATATTCTATGCTGACGTTACATTATCATGTTTCTCAGACTTCAGGCTCAACCTACGAACACATCTAGTGGTGACAGA GGAATGTCTGATGTTTTTTGGAAAACTCTCAAGACTGAAGGCTTTGGAGGTTTCTACAAGGGACTCATTCCAAATCTCCT CAAAGTTGTGCCAGCTGCAAGCATTACCTATATGGTTTATGAAAGTATGAAGAAGAAACTAGATCTTAAGTAG
CDS sequence (LotjaGi4g1v0417200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGCAGTGATGAAGATATGGCAACGAGATGGTTTGTTAGGGTTTTTCCGAGGTAATGGATTGAATGTTGTGAAGGT TGCTCCAGAGAGTGCCATCAAGTTTTATGCTTATGAAATGATTAAAAATGTAATCGGAGATGGTCAAGGGAACAAGTCAG ATATCGGTACTGCTGGAAGACTTTTTGCAGGTGGTATGGCTGGTGCTATTGCACAGATTGCTATCTATCCACTGGATCTT GTCAAAACTAGGTTACAGACTTGTGTTCCTGAAGGTGGAAGGGTTCCTAAGTTGCGCACACTTACAAGGGATATATGGGT CCATGAGGGACCTCGGGCTTTCTATAGAGGGCTTGTTCCATCTCTTCTTGGTATGATTCCTTATGCAGGCATTGATCTCA CTGCCTATGACACCTTGAAAGATATATCCAAAACATATATTCTTTATGACCGCGAACCTGGTGCTCTGATACAACTCGGA TGTGGGACAATTTCAGGAGCTCTTGGAGCTACATGTGTCTATCCACTGCAGGTTATTCGTACAAGACTTCAGGCTCAACC TACGAACACATCTAGTGGTGACAGAGGAATGTCTGATGTTTTTTGGAAAACTCTCAAGACTGAAGGCTTTGGAGGTTTCT ACAAGGGACTCATTCCAAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACCTATATGGTTTATGAAAGTATGAAGAAG AAACTAGATCTTAAGTAG
Protein sequence (LotjaGi4g1v0417200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPAVMKIWQRDGLLGFFRGNGLNVVKVAPESAIKFYAYEMIKNVIGDGQGNKSDIGTAGRLFAGGMAGAIAQIAIYPLDL VKTRLQTCVPEGGRVPKLRTLTRDIWVHEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDISKTYILYDREPGALIQLG CGTISGALGATCVYPLQVIRTRLQAQPTNTSSGDRGMSDVFWKTLKTEGFGGFYKGLIPNLLKVVPAASITYMVYESMKK KLDLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 244 | 244 | 3.1E-156 | – | |
| PANTHER | 1 | 244 | 244 | 3.1E-156 | – | |
| Gene3D | 1 | 244 | 244 | 8.4E-76 | ||
| ProSiteProfiles | 1 | 44 | 44 | 11.572 | ||
| Pfam | 3 | 46 | 44 | 2.7E-10 | ||
| SUPERFAMILY | 3 | 236 | 234 | 2.88E-64 | ||
| PRINTS | 19 | 39 | 21 | 1.3E-16 | ||
| Pfam | 54 | 142 | 89 | 1.5E-22 | ||
| ProSiteProfiles | 55 | 142 | 88 | 20.754 | ||
| PRINTS | 70 | 88 | 19 | 1.3E-16 | ||
| PRINTS | 115 | 133 | 19 | 1.3E-16 | ||
| ProSiteProfiles | 153 | 241 | 89 | 24.251 | ||
| Pfam | 155 | 242 | 88 | 2.9E-25 | ||
| PRINTS | 162 | 184 | 23 | 1.3E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP transmembrane transporter activity | Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0417200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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