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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0428700 |
| Transcript ID | LotjaGi4g1v0428700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein CONSTANS; TAIR: AT5G41380.1 CCT motif family protein; Swiss-Prot: sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5; TrEMBL-Plants: tr|V7CT52|V7CT52_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0428700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80307711..80309964) extracted from Lotus japonicus Gifu genome v1.2.
AGGACATAACTGCAAATTCACAAACATGATTTCTTATAAATTCCATGATGCATAAGCATTCAAGCTGGGAGAAACTGGTC TCTACTTCAACCAGAGGTGTTGGCAAGGTCATTAAAGAGTGTGACAGAAAGGTACAAGTTTCCATTTGTCTTGTTCTCCC AGGAGTCACTTCACTTTCCATATAATCACAGCCTCAAGTGCAGTTTCAACACAGACAAAATTAGCACCCTCATCACAAGC ATAAACCAAATTAAATTTCTTATTTTCTTCTTGTAACAACAAATAGTCTCACCCTCAGCTTCAGAATCAGGGTTCAATTT TATCACGAATTTTGATTCCATGTCTTCTGATCTCTATGCTTTTGGCACTACTTTCCACACACATTCAAGCTCAGACCTGG TTTCTGCTGATGGGGATGTTGGAGACTTTCCATTTTTCCCTGACCCTTTCACTTGCTTCACAAGTTCTCCCACTGATGAA GCTCAAAAGAGCTCAATTTCAAACCCATTTGATGAAACTCTTGCTAATTCTCTTGACCCATTTTCCCCGTCTTTTTCCTC TTTCTCTCCCCCAAGTTCCCACTTAGGAAGCCTCAGCCTTTATGCCGCCAACCGTGTGCAGCAGCAGCAGCCTCTGTCCT CAAATGGCTCCAATTTAGCGACGGAATATGGATGCTTCTCAGCTTTTGATGAGTCTGAAGTGAAAAGTGAGGAATCCCAA ATGGGTGTTGTTCATGATTATACCTGCAGTACTCAGAAATTCATTCCTCACAGTTACAGTGGTGCTGAGGATTTGTCTAA GTACATGCAAAGAAGCTTCAGCAGTAACTGTTTTGAAGGGAAGCCAAGCTTTCTGTTCCAAAATTCTCACCATGATGCTT CAGTGGATTCATCAAAATTTCAAAAGCATGAGATGAATTCTCCTGAACACAGTGTCTTCTCTGGACAGATGAGGAGGGTG TGCAGCACAGGGGATTTGCAGGTACAAATAATTAACACCCTCATTCATTTTATATTTTTATGTTTTCTCTTATTTAATTT CAATTTCTAAGTGAATGCTTAATTTTCTCTCTAAAATTGTAAGAGAGCATCTTAGAACAAAATACTTACGTTTCTAATTC GGTCAAATGTTAGTCAAATTAGTTTATGTACGAACCAACTTGACCGAGGTTTTATTTTATCGGACAATAAAGACTAATTT GACGGACATTTGACACGGTTAGGCTGTGATAGTATTTTCTTCCTAATTTGCCCGACGCTTACGCACTTAGCTTTTAGAAA CGAAATTGAGCATTCACCACTATGTTTTTTTGTTTGTTCTGCTTGCAAGTTGATTTTTTATATTGAACAGAACATGAAAG GAAATCACATGTCTCCATCGGAAGGGCCTGTGTTGGAGGAATCAAACTTCAAAGTAGGGCGTTACAGTGCTGAAGAAAGG AAAGAAAGAATTTCTAAATACAGAGCCAAGAGAAACCAGAGGAACTTCAACAAGACCATTAAGGTAATAATAACACTGTT TCCTAATTTTTTAAATCACATTATTATAATTAAGATTGTCTGAATTAATATATGTGTTTGATTCTGTGGTACCTGCAGTA TGCATGCCGAAAGACACTAGCCGACAATCGACCACGCATACGTGGCAGGTTTGCACGCAACGATGAGACCTGCTAGATAA CCAAGGCTCCGTGTGTAACTAGAGATGAAGATGAAGCTGATTTCTGGGTAATAAATCTTAATTTTATTGCTTAATCAAAT GTTAACACATGAATTAATGAATTTAATTAGGGGTGCATTGTTGATTACTAGTTAGTTTACGGTGTTGTTCACTTTCATGT AGATTGAAGAATTGCGGCTGCATGAAGAGCAAGATCATGATGTAACAGTGGCAGCACAACAGTATATGAAAAGTTATGGA GCTACTCAGTTTCAATGTTATGGTTATTGAGGAAGAAGAATCTTTTTTTTTTCTTCTTTTTTATGGAAGAGCTAGCTAGC TTGATCAAGGAAAAGTCTTTTGCAAGCCACAGACTAATGTAGTGCTGCAGTTTGCAGATAGTTAATTTTATTTTTTAACA TGTTTTTTTTCTTTAAATAAAGACAATATATATCAATAAGAGTACCACTATGTAGATTCTTTGATGCCCCTAAGGTCAAA CATGAAATTGGGTTGTTGGAGGTGGCTAGGATAATTTAGTTATAGTTGCTAACTATTTATCTTTTTTAGTACTTATTCCA TATTATGATTATCA
CDS sequence (LotjaGi4g1v0428700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTGATCTCTATGCTTTTGGCACTACTTTCCACACACATTCAAGCTCAGACCTGGTTTCTGCTGATGGGGATGT TGGAGACTTTCCATTTTTCCCTGACCCTTTCACTTGCTTCACAAGTTCTCCCACTGATGAAGCTCAAAAGAGCTCAATTT CAAACCCATTTGATGAAACTCTTGCTAATTCTCTTGACCCATTTTCCCCGTCTTTTTCCTCTTTCTCTCCCCCAAGTTCC CACTTAGGAAGCCTCAGCCTTTATGCCGCCAACCGTGTGCAGCAGCAGCAGCCTCTGTCCTCAAATGGCTCCAATTTAGC GACGGAATATGGATGCTTCTCAGCTTTTGATGAGTCTGAAGTGAAAAGTGAGGAATCCCAAATGGGTGTTGTTCATGATT ATACCTGCAGTACTCAGAAATTCATTCCTCACAGTTACAGTGGTGCTGAGGATTTGTCTAAGTACATGCAAAGAAGCTTC AGCAGTAACTGTTTTGAAGGGAAGCCAAGCTTTCTGTTCCAAAATTCTCACCATGATGCTTCAGTGGATTCATCAAAATT TCAAAAGCATGAGATGAATTCTCCTGAACACAGTGTCTTCTCTGGACAGATGAGGAGGGTGTGCAGCACAGGGGATTTGC AGAACATGAAAGGAAATCACATGTCTCCATCGGAAGGGCCTGTGTTGGAGGAATCAAACTTCAAAGTAGGGCGTTACAGT GCTGAAGAAAGGAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAAACCAGAGGAACTTCAACAAGACCATTAAGTATGC ATGCCGAAAGACACTAGCCGACAATCGACCACGCATACGTGGCAGGTTTGCACGCAACGATGAGACCTGCTAG
Protein sequence (LotjaGi4g1v0428700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSDLYAFGTTFHTHSSSDLVSADGDVGDFPFFPDPFTCFTSSPTDEAQKSSISNPFDETLANSLDPFSPSFSSFSPPSS HLGSLSLYAANRVQQQQPLSSNGSNLATEYGCFSAFDESEVKSEESQMGVVHDYTCSTQKFIPHSYSGAEDLSKYMQRSF SSNCFEGKPSFLFQNSHHDASVDSSKFQKHEMNSPEHSVFSGQMRRVCSTGDLQNMKGNHMSPSEGPVLEESNFKVGRYS AEERKERISKYRAKRNQRNFNKTIKYACRKTLADNRPRIRGRFARNDETC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 289 | 289 | 3.2E-102 | – | |
| PANTHER | 1 | 289 | 289 | 3.2E-102 | – | |
| Pfam | 244 | 286 | 43 | 5.6E-18 | ||
| ProSiteProfiles | 244 | 286 | 43 | 15.587 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0428700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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