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LotjaGi4g1v0443000.1

Overview

Field Value
Gene ID LotjaGi4g1v0443000
Transcript ID LotjaGi4g1v0443000.1
Lotus japonicus genome version Gifu v1.2
Description Inositol oxygenase; TAIR: AT2G19800.1 myo-inositol oxygenase 2; Swiss-Prot: sp|O82200|MIOX2_ARATH Inositol oxygenase 2; TrEMBL-Plants: tr|G7LJN9|G7LJN9_MEDTR Myo-inositol oxygenase; Found in the gene: LotjaGi4g1v0443000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:81633961..81636887) extracted from Lotus japonicus Gifu genome v1.2.

GGTTTATCTTCCCTTATTTACTTGTTGTAACTGACATTTGACTGCGTTTTCCTTGAATTAATGTAGGAGATCACAATTTC TCTATGGGACCGTACTGATTTTTTATTTTTATTTTGTCTTCCAATTTTCTTGGCAAGGACTACTCATTGAACTATAAATG TACCTGCTTATCAAAGCTTCATAATGATATTTCTTGCTTTTTCTTGTTTCTCCACTCTCCACCAACCCTTTAATTTACTG TTCTAGTCTTCTTTGTTGGAGAAAATGGTCATCCTTCTTGAGCAACATGATTTTGGTATGATTGATTTCACTTTATTATT TGTATTTTTGGCTCATAGTAGCACATTAATTAGTCCCATCACATGCTGATGCTTTCAGGGCTACAATTTGAAGAGAAAAA TGTGCATTCTGAAGAAACCAATGAGCTTGTGCTGGATGGTGGATTCCCCTCATTAAAGCAAGTGTCAAATGATGGATTTA CTGTCCCAGAAATCAATTCATTTGGCCATTCATTTAGGTTGCTATTCCATTTCAGATTCTCTATGTTCTTCATTTGTGTT AAACTTTTAATTTTTTCATAACATGACACTTTATAGCTATAATTTTTTTCTCAAGTTAAAAAGTGGAAACGAACTGACAT GATCCAATTGAAATGAAACATTTTGCAGAAATTATGATGCAGAAAGTGAAAGAAAGAAAGGGGTGGAGGAATTTTATAGG TTGCAACACATCAACCAGACATATGACTTTGTAAGCAAAGTTTGTTTCCATAAAAAATTCAAAAGCATTCATGTCTACTC ACAAAAAGGAAATGCAATGTGACAAAATTTGAATTTGCTAAATGCTAAATCAGGTTAAGAGAACGAGGGAGGAATATAAG AAACTGGACAAAGCAGAAATGAGCATATGGGAATGTTGTGAATTGCTTAATGAAGTGGTGGATGAAAGTGATCCAGATTT GGATGAACCTCAAATTCAACATTTGTTACAGTCAGCTGAGGCTATCAGAAAAGACTACCCTGATGAAGATTGGTTGCATT TGACTGCTCTCATCCATGGTACATGAGCTTGAAATGTCTTTTTTTCTTCCTATTTTCCTTCTTTATAAGCCAGGATAAAA AATTCATTAATATATAAAGTATGGTCACTTTTCCTAAATGAATATGTAATTTAGTCCACCATGGATGGTTGGTTCACATG TTAAATGCTCAATTTTCCTTAAAAAATATTTTGAGTTCGAGTTTTGTAGATGAAAAATAAAAACTTGTACGAGAAGAACT AATCCCACTGTGATATGAATATTTTCGGTTCAAACATAATTGTATTCCCTAAAGGTACTTATATTTTCTTAAAAAGTTTG GGCCTCATTCTATTTGAAAATGTACCACACTTGTATATATATTTGGAGAAAGACAGACAATAATTTTTTAACCAATGATG ATCAACAAAAGATTATTGGTTTGCTTTCAGATCTTGGAAAGATTCTTCTCCTTCCTAAATTTGGTGAGCTTCCACAATGG GCTGTTGTTGGTAAGAACTGTGTTCACTATACCTTTCATGTATAAGATTTCCCTCATGTCCAATTAGTAACATAACTTCA ATTCAACATTTTAACTGAAAGGTCAATGACATATTTGGCAGGAGATACGTTTCCACTAGGTTGTGCCTTTGATGAATCAA ATATTCACCACAAGGTAATTAATTTATTCCAAAATCATGATAATGGCACTAATTTTTATCTTAATTTATCAAAGGGCTTA CACTTCATTCCTGCTTTAGTATTTCAAGGACAACCCTGATGCCAAATGCCCTGCTTTTAGCACAAAAAATGGGATCTACA CTGAAAAATGTGGACTAGACAACGTGATGATGTCATGGGGACATGATGATTATATGTATTTGGTGAGTCTAAATTTGTAT TAAGAAATCACAGGGGTAGTTTAAAACTTATATATTATAAACATGCTTTTACATTTTATTTAATTAATATCTAATACATG GTCTACTCCAATTTGAAGGTTGCTAAGGAAAATGGTACCACTTTGCCATCACCAGGATTGTTCATTATAAGATATCACTC CTTTTATCGTAAGCATTCTCATCATCTATTATATCCTTTTGGGTAAACTTGTGATATAATTAGGCATTTTTGGTCCGACA AATTAATGACCACAACTTATAACCATATATGCAGCTTTACACAGGGAAGGTGCATATACTCACTTGATGAATGAAGAAGA TAAGGATAATTTGAAATGGCTCCACATATTTAAGTATGATTGTGTTTTGATTTGTTAATTTGTACACGTCTTTTGTTGCT TCACACATAACTGACCTATAAAATATATATTTTTCACAGTAAATATGATCTATACAGCAAGAGCAAAGTTTTAATTGATG TTGAAAAGGTTAAGCCATACTATCTATCACTCATTGAAAAGGTGAGGTCAAATTCTAATTATATTGATTGTTTTATCAAT TAATTTCATTTCCTTCTTGTTGTTTTTATATGTGTGATTCTTATATTCTTTTCGGTCATGTTTTGCAGTATTTCCCAGCA AAACTTAGATGGTGAGCCTTGAGGATAGAAAAAGACTAAGAATTGGGGTCAACTGGTCAAGGGTACGAAGGAGATTGATC TTTGAGTATTTGGGCAAGCAATCCACTGAATTATATAGATTTAATCATTCGTTTTTTTGGGAGCTTTCAAATTGCAATTC AATATTATGTGATGTACTTATGCAATATATTGCAACTAGTGCGATAACCCGTGCGTTGCACGAAATTTTATGTTGAAATT TTTTAATAAATAAATTAGTTTTTTATATATGTAATTTTTAAATTATAAATAGGTCAATTGTGTATAAGTCAACCGTTTAA TAATATATGAAGAAAAAGCAGAATAAATAAATGAAATTGTGTTGTAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0443000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTCATCCTTCTTGAGCAACATGATTTTGGGCTACAATTTGAAGAGAAAAATGTGCATTCTGAAGAAACCAATGAGCT TGTGCTGGATGGTGGATTCCCCTCATTAAAGCAAGTGTCAAATGATGGATTTACTGTCCCAGAAATCAATTCATTTGGCC ATTCATTTAGAAATTATGATGCAGAAAGTGAAAGAAAGAAAGGGGTGGAGGAATTTTATAGGTTGCAACACATCAACCAG ACATATGACTTTGTTAAGAGAACGAGGGAGGAATATAAGAAACTGGACAAAGCAGAAATGAGCATATGGGAATGTTGTGA ATTGCTTAATGAAGTGGTGGATGAAAGTGATCCAGATTTGGATGAACCTCAAATTCAACATTTGTTACAGTCAGCTGAGG CTATCAGAAAAGACTACCCTGATGAAGATTGGTTGCATTTGACTGCTCTCATCCATGATCTTGGAAAGATTCTTCTCCTT CCTAAATTTGGTGAGCTTCCACAATGGGCTGTTGTTGGAGATACGTTTCCACTAGGTTGTGCCTTTGATGAATCAAATAT TCACCACAAGTATTTCAAGGACAACCCTGATGCCAAATGCCCTGCTTTTAGCACAAAAAATGGGATCTACACTGAAAAAT GTGGACTAGACAACGTGATGATGTCATGGGGACATGATGATTATATGTATTTGGTTGCTAAGGAAAATGGTACCACTTTG CCATCACCAGGATTGTTCATTATAAGATATCACTCCTTTTATCCTTTACACAGGGAAGGTGCATATACTCACTTGATGAA TGAAGAAGATAAGGATAATTTGAAATGGCTCCACATATTTAATAAATATGATCTATACAGCAAGAGCAAAGTTTTAATTG ATGTTGAAAAGGTTAAGCCATACTATCTATCACTCATTGAAAAGTATTTCCCAGCAAAACTTAGATGGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0443000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVILLEQHDFGLQFEEKNVHSEETNELVLDGGFPSLKQVSNDGFTVPEINSFGHSFRNYDAESERKKGVEEFYRLQHINQ TYDFVKRTREEYKKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKILLL PKFGELPQWAVVGDTFPLGCAFDESNIHHKYFKDNPDAKCPAFSTKNGIYTEKCGLDNVMMSWGHDDYMYLVAKENGTTL PSPGLFIIRYHSFYPLHREGAYTHLMNEEDKDNLKWLHIFNKYDLYSKSKVLIDVEKVKPYYLSLIEKYFPAKLRW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12588:SF8
1 316 316 1.0E-175 –
PANTHER
PTHR12588
1 316 316 1.0E-175
IPR007828
SUPERFAMILY
SSF109604
59 316 258 8.28E-116 –
Pfam
PF05153
67 316 250 3.0E-125
IPR007828

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005506
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0019310
Biological process Inositol catabolic process The chemical reactions and pathways resulting in the breakdown of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms.
Subterm of
GO:0050113
Molecular function Inositol oxygenase activity Catalysis of the reaction: myo-inositol + O(2) = D-glucuronate + H(2)O + H(+).
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0443000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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