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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0444400 |
| Transcript ID | LotjaGi4g1v0444400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oxidative stress 3, putative isoform 2; TAIR: AT5G56550.1 oxidative stress 3; Swiss-Prot: sp|Q90470|HXDBA_DANRE Homeobox protein Hox-D11a; TrEMBL-Plants: tr|I3SDR4|I3SDR4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0444400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81742617..81744223) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGCAATATAAAAACAACAATCTTATCCAATTCTTCATGGTAATCTTCTATATATGCCCACACAATTAGTATATACTT TATCCGTTACTGATTAACTGAAACATATCATGCATGTAATCAGATTTGTAGGATTTATATATGATAGATAAGATCCCTCA AGGAAGGCCTATTCATAGAGGGGAGATTTTCTTCATCTTCTCATTTTTTTTCTCAAATCTTCCTAGAAATGAATGCAAAG GGAATCATGGATACTGGTAAAGGAGCTGGGAACGCCAATTGGTTTGTTAAGGATGATGATGCCTGTGAATCAACATCCAT TGAATCTGTATCAGAAGATTCAAAGAACTCTGTGTGTTCATCATCTTCATCAGAGTTGGCAGATGAGGAGGAATCCTCTT CAGCATCTAATTTGTCAACATCCTCTTCATCATCACATTCAAATGGTCCTTTATATGAACTTTCAGAGCTCATGAGCCAT CTCCCTTTAAAGTAAGCAATGGTGCATATCTTTATTTTCCCTAGATGTATGTATTTTCTTTTTTGTTAAGAGTGTTTGGA TTGGGTACGAAACACAATCCAAAACACGGTAACTCTTCAAGCTAAATAGCATGTTTGGTTCTTTCTTTATGAGCAGAATC ATTTTTAGAACCTAAAAACTACTCACAAAAATTAACTTCTTTTAATTATAATTGATTCTAATTTCAAAATCATTTACAGT TTTTTTGGGAGTGATTATATGATTTCTCATCACTGGACCAAAGAGGCTATACCTTGATCCAATTTCATTTTTGGAAAATG TTCTAATTAAAATAGTGAAGTACTTAGTTAACTATGACATGTGCAGGAGAGGCTTGTCTAAGTTCTATGAAGGGAAGGCT CAGTCATTCAGTTCATTATCAAGGGTGCAGAGCCTAGAAGATCTTTCTAAGAAAGACAGACCTACTAATCACAGAAAGAA AATGAAATCATGCAATAGCCACAGAATATCCTACACTCCAAAGGCTACAATATCAAAGAAATCTTCCAGAAGAGGACCAT TTGTATCTGTACTAACTAAAAGAGGACCTTCCTTTGCTTTACACAGAAACTTTTGAAATCCAACATTTAAAAGTTTGCTT ATGTTTCATGCACAAAATGGGGAAAATTTTGAATCCCTCAGTTTGGAAAAAGTCATTTTAACCATTACATATTGATTTTG CTAGTACATATATCATTACTATTTTGTTTACCATGGTCATGTATAGGGTCCCTCTGCTTCATTATTCTTAATTAACATCT AAAATGCTTAAAATTTAATTTATACACATTTAAGTTAAAATATAATATGACATGAATAGAATCTTCCTTAAACAATTGAA TCTTTGAAGGTTTAATAAGTGTACGTATGGTTTTGCTTCTAGTCCGTAGAATTGATTCTGTTGCTGGCTCATAAGCTACA GTGAGTTACTTCTTAAAATAAGAATTGATTTCGTACTCATGTGTGAGTGCACGTTTGTATACACTATGCACGGTAAAAAA TCAGTGTGAAATTAAAATCAATGTCGACAAAAGCAACTTAATTACCTTATTTTTCGCAACTGCCCACCATGCTTATGCGT CTCATTG
CDS sequence (LotjaGi4g1v0444400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGCAAAGGGAATCATGGATACTGGTAAAGGAGCTGGGAACGCCAATTGGTTTGTTAAGGATGATGATGCCTGTGA ATCAACATCCATTGAATCTGTATCAGAAGATTCAAAGAACTCTGTGTGTTCATCATCTTCATCAGAGTTGGCAGATGAGG AGGAATCCTCTTCAGCATCTAATTTGTCAACATCCTCTTCATCATCACATTCAAATGGTCCTTTATATGAACTTTCAGAG CTCATGAGCCATCTCCCTTTAAAGAGAGGCTTGTCTAAGTTCTATGAAGGGAAGGCTCAGTCATTCAGTTCATTATCAAG GGTGCAGAGCCTAGAAGATCTTTCTAAGAAAGACAGACCTACTAATCACAGAAAGAAAATGAAATCATGCAATAGCCACA GAATATCCTACACTCCAAAGGCTACAATATCAAAGAAATCTTCCAGAAGAGGACCATTTGTATCTGTACTAACTAAAAGA GGACCTTCCTTTGCTTTACACAGAAACTTTTGA
Protein sequence (LotjaGi4g1v0444400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNAKGIMDTGKGAGNANWFVKDDDACESTSIESVSEDSKNSVCSSSSSELADEEESSSASNLSTSSSSSHSNGPLYELSE LMSHLPLKRGLSKFYEGKAQSFSSLSRVQSLEDLSKKDRPTNHRKKMKSCNSHRISYTPKATISKKSSRRGPFVSVLTKR GPSFALHRNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 161 | 143 | 1.8E-46 | – | |
| PANTHER | 19 | 161 | 143 | 1.8E-46 | – | |
| MobiDBLite | 29 | 75 | 47 | - | – | |
| MobiDBLite | 31 | 75 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0444400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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