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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0449900 |
| Transcript ID | LotjaGi4g1v0449900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H-like superfamily protein; TAIR: AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A0B2RF60|A0A0B2RF60_GLYSO Putative ribonuclease H protein; Found in the gene: LotjaGi4g1v0449900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82207744..82212463) extracted from Lotus japonicus Gifu genome v1.2.
GTCCCTCTAAAATAGGGGTTATTTGGTTAAGGCCCCTATAATTTTTTTTGGGTGGAATAAGCCCCTAATGTGAAAATAAT ATACAGTGATAAGCCCCTGCCGTGAAGTTTCGTTTAATTTCTGATGATTCTGCAAACGACGCTGACGTGGATTATATTTT GTGAAAATTATTCAATTCAAGAAGGTGTCACGTAAGTAAATTAGAGTTGAAAAAATAAAAATAAAATAAAAACCCAAAGT AAAAACCCTAAGTACGTTTGGGGATTTTACTTGGTTTTTTACTTTGGGTTTTTATTTTTTTTATTTTTTTAACCCTAATT TACTTACATGGCACCCTAATAATTTTCACAAAATATAATCTGTGTCAGCATCGTTTGCAAAATCATCAAAAATTAAACGG AACCTCACGACAGGGGTTTATCACTATATATTATTTTCACATTAGGGGCTTATTCCACCCAAAAAATTTTGTAGGGGCCT TAACCAAATGACCCCTATTTAAGAGGGACCTTTAACATATTTAAGCCTCTATATAATTGAACCTTCTAGTCCTTCCAGCT TCATCCATCACCAATTTCATCAATCACCATGGCTTCTCAATTTCAGCAGGGTCATCATGCTAACCTCACCGTCTCAACAT CACCGAAAAGTGACAGCGGTGGCAGCAACACCGTGTCAGGCTCAGTGATGTCTTGTCCCAAAGGACAGTGCCTCTGTTCT CCAACCACACATGAAGGCTCTTTCCGGTGCCGTTTTCATCGTTCAGGGGCTTCTAATTCATCATCATCACCACCAAGTTG GATGAAACGCTCCAAATCCATGCCTGCTAACAATAACAAGCATCATCATGTGGTTTCTGTTTCTCCATAGTGAGCCCCTG CTCCATGTGTATGTTAATCGATCCTTTTCTTAAGCTCCGATGATGATCACATGATCAAAACTAGCTTGTATAAATTAAAA GGCTTTTATGTTTTAATTAATCCTGCTTGGATTATTAATCAAAGCCCAAAGTTGCTTACTTTGTCATGTAATCATGTACT ATATATATCTTGAATATAATATATAGCAAAAAATCTCTTTTCTCTTTAAATTGTTTCTTCCGATTATTGATTTCTGAACT TTCTCATCCAAACTCATATGTCTCATAACTCTTACACTTGAGTTATCATTCAGGAACTAGTTAACTTTTTACAAATGTTG TTACTCATTCACGAAATCTCTGTATCTCTTTTTAGTAAATGTTTTTTCTATAATTTAAAATTGTATTTTCATTTTTACGT AAGCCTAGTTTATTTTCCACTTATTTAACACTTTATTATTAGTTACTGCACAACTAGATTGATAGGATGAAATTGATGAT TTATTGGCTTCTATGTCTATTTCTTAATATTATTTCAAACCATGTTAAAAAAAAAATTGATAGGATGAAATTCTTCAGCC TAATTAGTAATTACAACAACTGGATTGATACGCTCAAAAAAAAACAACTGGATTGATAGGATGAAATTCTTCAGGTAAAT TACAACTTAAAAACGACCAATAATTCACCATATTTAAATACTAATTATTTAATTTGTGGTTGAACAAATGATTCTGTGAG GCTAACGTTTAGGGATGAGGATAGAGTTGATTGACATTTGGACCCAAATAAATTGAAATTTATTTTGTTTAAGCCACAAA TTACAAATATTATCCACCAAAGTAATTATCTTCTGAGTCGAGTAGGATAAAAAGGATTTAGATCTTATATATATATAATT TTTTTACATTTGAAAAAATATAGCTTATATATATAAATATTAATTCATACAACTTTTTAACACCGTTGGACGAAATTCGC GCCAATTGGCTTTATTAATGGTTATCATTTACCTAACTTTGCACTCAAATCCAAATCAAGTAGTATTTGTGAAGGAAAAT CGTTGATAATTTAGGGATCACATGGTGTGAGCTTATGCAGAAAGTCGTCACTCTTATCCACTGCATTATATTTTAAGGAT AAATATCTCCACTATACATTGTTTCTTTTACGTCATATTTTATCACCTTTTTCAATATTTAAAACAGCAGTTGGGCTATT GTCAATTTGTCATCCTTGTCCTTAGAAAGAAAAAAACGACAATCATCCGTTGGTATCACTATCGCTTCGAATATCTCGAT CAATTTAGCTTTCGAAATTTGAAATAATATTTATTAAAAATATTAAGTCATTGTCTTAGCTCGATCATTTCAGCTTTTGA AATTATTTTTTATTAAAAATATTACTAAAGTAATATAACAGTTTCCGAAATTGGTCATTACCTCTGAATGAGTTAAATCT CTTCTTACGTTGGACCGGCATTATTGCATTGCATATCTACGTATTTAATTTGTTACTTTCTTGTCTGTAGTTACATTACA TTTATTAAAAAATCATAATTTCTTTATCTCATTTACTCCCTGATTAATCATGACTTAGGTCTTAGGTAATTAGGTTAAGT AATGCACTTAAAAGGAGTAATTATGTGCTTTCACTTAACTATAATCTAAACTAGGGAGCAACATCCAAGGAACGTCCATT TGGACTAAAACACTTTGGCTTCCTGTTATGGAGCATCTGGAAAAACAGAAACCTTGTGGTTTTTCAAAACCAACCTTTCA CCCCAGCAACGTCTTGGCGATGGCTAACCATCTAGCTATGGAAACCGGCCTTAGCACCATGAACCAAGGAAACCAGAGGC CGGCCTGCGCAGTCGGCTTACACTAACACCTTGATTGGTTGGGAGTTCCCACCTCTAGAATGGACCAAATTCAACGTTGA TGGTTCGGTGATATACCCAAATAGCCTAGCAGCCTGCGGAGGAGGCTGATGGGATTCTGCATAAATTTGGGGTCGTCCAA CGTTCTAGTTGCAGAATTCTGGGGTATCCTCACGGCTCTCCCAATTGCTTGGGACAAGAGGCTCTTCAAGGTAATCATCG AAAGCGACTCTACCACGGCCATAACTCTCATTGACAAAGGGTGTGAACCGCACCACCCTTATGCTGCTTTTGTTGGAGCA ATCCGATGCTGGAAGGAGAAACCATGGGAAGTGAGATTCGCTCACACTAGAAGAGAGGGGAACTTTGTAGCTGATTTTTT AGCTAACTTAGGCCATTCTGTTAGTTTTGGGACTCTCCATTTAGCTGAACCCCCCCCCCCCCCCCCCTGTGGGATGTAGT TACCTCCTTTATGGGGATTGTATGGGAGTTTCCTATCCCAGAAGTTGGGGCTTGCCATACATTGTGAAAAAAAAAAAAAC TAGCACAAGAACTCTAACGAGTTTCTCCTAGCATCATGCGGGTCAGCCCTGTTGTGAGGATACTTAAGGCTTGGGCCTTT GCTTGAATTCAGCCCAATGTTGCAATTTAAGTCATTTTAGGTGGTGGGAGTGACCAACAAAAAAAAGGTGGTAGTGAATA TGCCAATTGCCAAGAATAAACAAAAGGGGAAGAATATAAACGAAGGGTAAAGATTGGATGCTTTATAAATTAAGTTTATG CTAATTCTCGTGAGAAAGAAGAATGAGTCCAATATATGCAGTATTTATATATATTCTTTGGTTGAAAAAAGTCCAGGAAG ATGCAATGATCCCCCATTTTAAGGCTAAAGCTCATGATTTATTTAGTTTTCTTCACCTCTCATTTTTAATTTGTTCTTCA ATTTTCCTATAATTTTCATCATCTTACGGCTATCTTAATTCATCATCTCACCATTTAAAATTTGAGCTGTACTTAATGTT GTACCTATGTGTTTAATGTAGTACAGCTTAACTCAGACAATTAGCTCAGATCATTAATTAGATGTAAAATGACTCTTAAT TTTCATGTTGGATGTGTAGATTTCTACAAATACTTTCCTCAATTCCATTCTTATCTCTCCTCACAGAAACAATCAAATAA CAACAATGTCAAAGAAATGGATAAACAATTCTTGCGCATATACAATTTGCGCACTCGATCAAATGAAAGATGAGTTACTT GACAAAAGTTCATGTGATATAATTCCTATAATTATACTGCATTTATGTTTCAAATTGCAGTTCATAACCACAATTACAAC ATCATAACAGATTTTGGAGTCACCTTATTCACACCGGTCAATCACAATTGCGGCCGTATCAATCTACATTAATGCGCAAA TTCGCAAGGCTTCGGCAACCACACCTTAATATCCTTGATTGCATTAGCTTATTTAACACAAAAGGGTGAAGAAAAATGAT TTAATACGTACATGCTTATATTGAATCACACCTCAATTTTTCTACTTGATTGCTCTGTTCTGTTGTTGCGCCACACATAC TTAGCTTGATGTTGCCGGCACCGGAATGACCCTGGATGCTGTGACGGCGAGCACACACACCGCTTCATTGATCCCACCTC GCCGGAGCTTCCACCTTCGCTGCTAGCCTCTGCTGTCACCGCCAGTTCTTGCCCTTCAACCACCATAGGTAGTACTACTG CCCCCCTGAACACATGCCATCTAATTCTGTGCACCGCCACAAAAGGAACTCTTGACACATTTTTTCTTCTATTTCTTCTC TGTCTTTCTTATTCCTCTTTAGTGATCTTGAGTGTTTGGCTCAAACTAAAGGCTCATAAATTTGTAGATAGATTCCTTGA GAGTGGTTTGTGTTTGCGTTTTTCTATTGGAATTGGAATTGGAATTTGGACATATCATATCACTCTGCATTGGTCCAAAG
CDS sequence (LotjaGi4g1v0449900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTCTGCATAAATTTGGGGTCGTCCAACGTTCTAGTTGCAGAATTCTGGGGTATCCTCACGGCTCTCCCAATTGC TTGGGACAAGAGGCTCTTCAAGGTAATCATCGAAAGCGACTCTACCACGGCCATAACTCTCATTGACAAAGGGTGTGAAC CGCACCACCCTTATGCTGCTTTTGTTGGAGCAATCCGATGCTGGAAGGAGAAACCATGGGAAGTGAGATTCGCTCACACT AGAAGAGAGGGGAACTTTGTAGCTGATTTTTTAGCTAACTTAGGCCATTCTGTTAGTTTTGGGACTCTCCATTTAGCTGA ACCCCCCCCCCCCCCCCCCTGTGGGATGTAG
Protein sequence (LotjaGi4g1v0449900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFCINLGSSNVLVAEFWGILTALPIAWDKRLFKVIIESDSTTAITLIDKGCEPHHPYAAFVGAIRCWKEKPWEVRFAHT RREGNFVADFLANLGHSVSFGTLHLAEPPPPPPCGM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 101 | 100 | 3.6E-24 | – | |
| CDD | 2 | 93 | 92 | 1.52857E-24 | – | |
| PANTHER | 2 | 101 | 100 | 3.6E-24 | – | |
| Gene3D | 2 | 96 | 95 | 3.9E-11 | ||
| SUPERFAMILY | 5 | 97 | 93 | 1.02E-11 | ||
| Pfam | 9 | 94 | 86 | 3.8E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi4g1v0449900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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