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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0451400 |
| Transcript ID | LotjaGi4g1v0451400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication factor-A carboxy-terminal domain protein; TAIR: AT1G52950.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|P18749|ZO6_XENLA Oocyte zinc finger protein XlCOF6; TrEMBL-Plants: tr|A0A0R0EKB7|A0A0R0EKB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82358967..82360826) extracted from Lotus japonicus Gifu genome v1.2.
GGTCATGTTGTCATATTGCTTTCTCTTGCAAAGATAAAAGAGACAAATGGTTTGTTCTGTTATTTTATATTTAATTTAAA TTCTCTTATGCTTTTTGACTTTGTTGTACTAACTTTTGAAATATGGAAATCACTATTTTTTTTTGCAGGGAAATATCCAA CAACCATCCAAAACTCAATGTATTGTTCGAAATTGTTCATTGATGAACCTCTTGCGGAGATTCAGGAGTATAAAAATAGG TACAATTTTGTCATCTTTTATTAGATTCAGGTTATAGTTTTATCAAGATGATTTTTTTGTTATATTTATATTTTTGAGTC TATTACACATCTCTTTAAATTGCTAATAATTTTATAGGTTGGGCTCAATATGTGTCAATGAATCTTACAGTCAAAAAATG TCTCAATTCTCTTCATGCTCTCAATTTACAAGTGAAGAGAAATTTGTGCAAAATGATATTGTTAAAAGTTTGTCTCAGCT TAATGAGGTTCAGAAGGTATCTGGTTCAAACATAATTTTTTTTGCATTGTTTTTATGTCATCTTCAATTTTTTTAATACA CAACTACAAATTTGATCATGAATTGTATTTGATAGGAATGCTATGTAGTAACTGTTGCCAAAATAGATAAAATGTGTGTT GGAAATGGTTGGAGCTATGAAGCATGCTTTAAGTGCAATAGGAAGGCAGATTGTTCAAGTCTACCATTCACTTGTCCAAA ATGTGGGAAAAAAAACACTGAAACAGTTCCAAGGTTATATACTTTAATCACTATCTATGTTTTGATGAATGCGTTTTTGC ATATGATATGCTTTACTAATTGTTTAATGTATGTATTTCCAGATTTAGGGTTGAAGTTATGGTATCCTATAACAATAATA GTTCAAAATTTGTGCTGTGGGATCGAGAGTGTATCCAATTAGTGAAGCAAACTGCTATTGATCTTAAGAAGCAACTTCTT GATGTTAGTATATACAATTACACAACTTACACTAAAGTCTTATGCATGTTTCTTTTGGAGATTAATTGTTTCGTCATTAT GTAGGAAGGTGAATTTGATGCAATGGTTGTTCCAGAACCAATTGATTGCATTCTTGGAAAACTGTTTGCCTTTAAAGTTA AGGTTCAACCCGGCTACAAACAGTTTTCTGTCACAGGAGTTTCTGATAATGAAAAGACCATTGAAAGCATAAGGGACAAA TTGCAAGTTGATGAGGTATCTTTTGATCCATCTTATGAAAAAAGTTTGGATTTATAAACTTTTAACACATGATTTTATCT GTAGGATTCCCTAATGAGCAAGAAAGGGAAATCAATTAGCTCCTTCCTCAAAGAAGATGATGCATATGAGATTGTAAGTG TCTTACTAAGATATAAAGCAAGATTGAAACCTGCTCCAATAATTTGGAAGTGTGCTGATTGGTATTTATTTCTCTTAAAT TTTCAGCAATCATTGTCTGCAACAGCTGATTCTGATACTACATCAATAGGACATTGTACTCCTGCTAAGAGATTGTCAAA GGATACACTAGATGATGATTTTGCATGCCAAGATTTGCCTTCTGTTCAACTCTCTTCTTCAAAAGTCACAAAGCACATCA AAACTGAATGATATGCTTCATTTATTATTATTAAGATGAAGCTTATGAGTGAAACTTCTTTTTGCATCTTTTGGCTAGAA TAGAAACTAACCATAGTTGTTAGAAACAGTTGAATCAGTAACTGTGGCTTTTTTGTAATTAGATGCTATATAATCTTTTT GTAATTAGATGCTATCTAAACTGTTTAGCCAGTATTGACTTCACTATGTGGAAGATGTTTTCCAGCTCACTTTATTATAT GGAGTGAATATATGTCTTGG
CDS sequence (LotjaGi4g1v0451400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTGTTCGAAATTGTTCATTGATGAACCTCTTGCGGAGATTCAGGAGTATAAAAATAGGTTGGGCTCAATATGTGT CAATGAATCTTACAGTCAAAAAATGTCTCAATTCTCTTCATGCTCTCAATTTACAAGTGAAGAGAAATTTGTGCAAAATG ATATTGTTAAAAGTTTGTCTCAGCTTAATGAGGTTCAGAAGGAATGCTATGTAGTAACTGTTGCCAAAATAGATAAAATG TGTGTTGGAAATGGTTGGAGCTATGAAGCATGCTTTAAGTGCAATAGGAAGGCAGATTGTTCAAGTCTACCATTCACTTG TCCAAAATGTGGGAAAAAAAACACTGAAACAGTTCCAAGATTTAGGGTTGAAGTTATGGTATCCTATAACAATAATAGTT CAAAATTTGTGCTGTGGGATCGAGAGTGTATCCAATTAGTGAAGCAAACTGCTATTGATCTTAAGAAGCAACTTCTTGAT GAAGGTGAATTTGATGCAATGGTTGTTCCAGAACCAATTGATTGCATTCTTGGAAAACTGTTTGCCTTTAAAGTTAAGGT TCAACCCGGCTACAAACAGTTTTCTGTCACAGGAGTTTCTGATAATGAAAAGACCATTGAAAGCATAAGGGACAAATTGC AAGTTGATGAGGATTCCCTAATGAGCAAGAAAGGGAAATCAATTAGCTCCTTCCTCAAAGAAGATGATGCATATGAGATT CAATCATTGTCTGCAACAGCTGATTCTGATACTACATCAATAGGACATTGTACTCCTGCTAAGAGATTGTCAAAGGATAC ACTAGATGATGATTTTGCATGCCAAGATTTGCCTTCTGTTCAACTCTCTTCTTCAAAAGTCACAAAGCACATCAAAACTG AATGA
Protein sequence (LotjaGi4g1v0451400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYCSKLFIDEPLAEIQEYKNRLGSICVNESYSQKMSQFSSCSQFTSEEKFVQNDIVKSLSQLNEVQKECYVVTVAKIDKM CVGNGWSYEACFKCNRKADCSSLPFTCPKCGKKNTETVPRFRVEVMVSYNNNSSKFVLWDRECIQLVKQTAIDLKKQLLD EGEFDAMVVPEPIDCILGKLFAFKVKVQPGYKQFSVTGVSDNEKTIESIRDKLQVDEDSLMSKKGKSISSFLKEDDAYEI QSLSATADSDTTSIGHCTPAKRLSKDTLDDDFACQDLPSVQLSSSKVTKHIKTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 218 | 218 | 2.2E-26 | – | |
| PANTHER | 1 | 218 | 218 | 2.2E-26 | – | |
| Gene3D | 36 | 210 | 175 | 2.2E-11 | – | |
| CDD | 60 | 187 | 128 | 2.472E-16 | ||
| SUPERFAMILY | 62 | 191 | 130 | 2.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0451400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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