Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0455500.1

Overview

Field Value
Gene ID LotjaGi4g1v0455500
Transcript ID LotjaGi4g1v0455500.1
Lotus japonicus genome version Gifu v1.2
Description Jasmonate zim-domain protein; TAIR: AT3G17860.1 jasmonate-zim-domain protein 3; Swiss-Prot: sp|Q9LVI4|TIF6B_ARATH Protein TIFY 6B; TrEMBL-Plants: tr|A0A0S3QWL8|A0A0S3QWL8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0455500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:82707778..82712613) extracted from Lotus japonicus Gifu genome v1.2.

GTTTCTATTAAAGTTCCCATTCAACGGCCAAGATCTCATGAAACCTGTTATGTGAAACACACGCTTATTTCTTTCTTCTG AAGTTGGAACCTTTGTACTTGAGTCTTCTTTGTTTCTCTGGTTGTTGACGTTGTTGTTGTAAGAGAAAGGAACAAGAACA AAGGGTTGTTGTTGTTTCATTTTTACATGTGAAGGAAGAAAATTCTCAATTTTTGGCTGGTGGGTTTTCAATTTCATTGG ATTTTGCTTTATTCTAAGGATACAATTTTTGTCTCTGAAATGGAGAGAGATTTCATGGGTCTGAGCTCCAAAGAACCACT CTCTGTCATCAAGGAAGAAATCAAAAATGATGGGTGGATAGACTCAGGTATGTTTTTATTTATTGTTTTCCTGCTCAATC CTCATCCAATTTTTTGTGCTTGTTTTCTCTTGCTAAATTTCAGTTCTTGTGCTTGAATTGAAGTTGTGAATGTTTGGTGT TCAATCACACTTTTTTAGATTGCATGCAGGTTGATTTGAGCTGCAAAATTAAATTTTGATCATGTCCTGTTGTTCTTAGA TTTGCTTGGTTGATTCGTTTTTTTCTCTTTTTGACATGCTTTTGCTTTTCCTTGGTCCTGCTTCTAACTAACTTTAAATG GGTTCATATGTTTTAGATTTTAATAGTGGAACTAAGTTGTGACTCTTGTTTAGATACTTAAAGTAGAGTGCATGTGTGTC AAATTAAATTTGCAATTTTTGGAAAATAATCTGTGTCAAGTTCTTACCAATTTTGTTGATTTGAGTGTGTTCCTAAAATT TTTCATGTAAGGTTAGCAGAAGCGAAATCGTGAATCTTTGGTATCTCTCTTTTGTCTCTCAAGGTTTAGTGAGCGATTAA TTGCATGTTTGGATCAGTTTCGGTTTCTTCCGAATAAATTCTGAAACCCAGGAGCTACTCACATAAGCTTTTCCCAAGGA TTGATTATGGCTTTAGAATCAATTGTAGAAGGATTTTCGAGCACGCACTAAGATCCTTTTGTGGGTATGTGCAGGTTTCA CGAAGGGTTCGGTTGCACAATGGCCCTTCACGAACAAAGTGTCTGCTTTTCCCCATGTGATGTCTTTCAAGGTTTCTCAA GATGAAAGGACTAAAAGGATGGTGTCTGAACCCCAGGTTTGCTACTACCCTTTCTCAGTTTCTCTCTGTATTTATTCAAA ATTGACTGTACAACATTCTGTGTTATTTAGGCTTTAAATTAAAATTAAAATGAGTATAATTCATTTGTCCACATTTAACA ATTTGGATGGTTTCAGTATGTTCTGATTGGTATGCTTATTTTAAGTCAACTCTATAGTTTAAGAGGACAACTTTTTCTTT TTCTTCAAAAAATTTATACCATAATCTCTTGTTGTTTTGTAAACATCTCAGTTCTGATGTTCCAAACTGTCAATTTCGTA AGTTTCTTCATACTAAATCTGTCCGACACATTCAATAAGTATCAGCTTATGTGTCTTTGCTCTTCCATTGATTGTTTGTT ATTGCTATTTAGAAATCTCTCAATCTCAACGAGCAAGGCGGCATTCATTTTTCACTGGCGCCGCATCCGGTACAACATGA TGGGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCTGCCCCCTTGGGAAACCCATTCCAGAAGAATCATTTTGCCGCTG CTGGTCAGAATATGAACGGTGCTAATGTAAAACTGCCACTTCTCGGGGGAAAACCTGTTACCGCACCTCATTCATCTCTT CCCACCATTGGTGCTGTTGCTGGAATGTCTGAATCATGGTAATTTACTAGTTTTGATTTTATGCTTTAACTGTTAGGCCG TGCAGTGCACCCACTTGTTCCTTTTTAATTTCTCTAATTTGTGTTAATTTGAAGTAACAGTCTGAAAACATCTGCGCCTT CTGCCCCACTTACCATCTTCTATGCGGGTACTGTCAATGTCTTTGATGATATCTCTGCCGAGAAGGTACCTGTCTTTGCT CAACACATTCGTTACACTCTTATTTGTGATAAAGTGTGTGATTGATTCCATGCTTCATTAGAATCAATTCTCATTTACCA GAATAACTTTTAGTTTTAGCCTTTAGGTCATTATATCAATATCCTACAATCGACTTAGAGATTTGATTTTAATGCGGAGA AGCTAGTGAGAGTAGCTTCTGCAGTGGAGATAATCAATTGTCGGATTTTATAATTGGATTTCACAACATTACCCTATAGA AGTCACTTTTCCAATAAACATATTCAAACATATATTACTTCACTTTCAACTTTCTTTTACCATAATCAATTTTAACAAAA TCAATTCTGACGATGCTGATCAAAACACACACGAAATAAACAAATACAAAGTGAAGAAAGAGAGCATACATCTTGTATTT CTTGTTAACCTGGCCTTGATCATGGTTAAGTTTAAATGTTTCCCTCTTTCTGCAGGCACAAGCAATCATGTTGTTGGCGG CTGGCAATGTCTTATTCGGGGCTTCTAGCACGGCACAGCAAAAAGTTCAGGCACCGAGCTCTAAGTTGGCTGGTGGTGAT GTCTGTCCGCCTGCAAATACACCACCCTGCTCTGGTCTTTCAAGTCCTTTGTCTGTTTCGTCCCCTACCGGTGCACATTC AGGGAGTGGCTCAACTAGCACTGATGAATTTCTGGCAGCGAAAACAACTGGAGTTCCTACTGCTCCTGTTAGCATTGTGG AGCCGCGAAAAGCAGTCACCGCGGCCACTATGTTAACATCAGGTACTTTGGCGATATCATTCTCACACTATTGCAGTTTC ATGTTTCTGTTTTTGTTTATTGATATCTTGTTTCGGGATATTCATCTACAAATCACATTTTGTGAACTATCTTTTGTGCA GCGGTGCCTCAAGCTCGGAAAGCATCCTTGGCTCGATTTTTAGAAAAGCGCAAGGAAAGGTTAGTTCTGGTACATGATTT TTTTTGGCTAAAAAACATTTTTTGCCCCTGATGTTTCAAGTTTGTGCAAATTATGCCCCTACTCTATTTTTGTCGATGTT TCTACCCCTGACGTTTTCAAACAGTGCACTGTATACCCCTCCGTCAGTCAGGCTTTCTCAGGAGAGGTTCCTGAGTGGAT TGGAGAGATGAAGAAGAGTATATGAAGTTGATGATGATCAAGGAAATGATATAAATTAAATTTGCTTGATGTTTATATCA ATTATGCATGTAATTGAACTGGTTAAATGCATGTTTTGCTACTTACAGGTCTTGAGTTTGAATCTCCCTTGCCTCTTTTT TCCAATTTCACTTGTAATTTCCACGTGGCAGTTCCAAAAAATATATAAAAAAAAGTCACATCAGCTCATTCCGTTAGTTT TTTAACGTTTGACTGATGGAGGGGTAGACGATGCACTGTTTGAAAACATGAGGGGTAGAAACATCGACAAAAATAGAGTA GGGGCAGAATTTGCACAAACTTGAAACATCAGGGGCCAAAAGTGTTTTTTAGCCTTTTCTTTTCTCAGATGCGTAATTTT TATTTCTGCACAAATGGAAATCATCCTTAAATGACTACTCTGGCAACTGGTATTTATCAGCAAGATTGGATGGAAGTATT AACATCATGAGGCCATTCTCTTTGCTTGCAGGGCGATGAATGCAGCACCATACAATAACCTCAAGAAGTCTGAGGAGTGT GCCAATGCATAAAACAGTGGTGGTTCTGCTACTAATACTCTTCAGCCTAGCAAGGATAGTAGCCTGAACCTTTAGTGAAC TATTTCAAAGAAAATTGTTGTTGTAACCTAAAAATACTGTAAGCATATGCTTTTATTCTTCGTTGATCAAAACTTGTGCT GACATTCTAATGTTCCAGACTATTCAGTGACATGGGTAGATTAATGAAAACTCCATCAATGAGCTACAATTATGATATTA TTACATTCAATTTACTCATATATAAATTAGTAGAATGATAAATTTTTACTATCTAGCATTTCTCCTAATAGGAACATAAC ATTGTCAAATGCTTTTAAGTGTGTTTTAAAGCATGTTTGAACAGTCAAGTAGATACATCAGAGATTTCTCATTGTTCATC TAATCAACTAAATGTATAGATTCCATCAAAACTCTGAAGTTTCAAAACCTCAAACGTCTTAAGACTCAACACTACATGTG ATAAGGTCCAAGTGAAGATGTAAAATACAGGATTTTTCCAATTCATGCAGGGAAAGGGAGACAATAGATACCCAATTTCA AGTGAGTAAACATAATTCTATACTCAATCCCATAGATACATGTAGAATTATGGGGAAAGCTTATGTAATTGGCAAGTGAA GAACCATCACATGATACTACCTCCAAATTGGTAATAATACTTCAAGCCAAGGTAAGGCCATCCAAGATACTACTCTAAGA ACTTCATTGCATCAACTAATAAATGTCTATGATTAAATAATATCATTTGTCTTTTATGTGAATAACACAATATATCTTGT GTTCGATTGGCCTCCAAAGACATTAAAGTAGCGTTGGGTGTTTGAGTTTTATGGCAAATAGACGTGAAGAGTTAGCATTG CGTTGGTTTGAACGAAAAATCAAACATAGCTTTAGTTTTTTTTTTTTGGGTTAAAGCTTTAGTAAATGGACATTGAACTG CAATACCAACATACACAAAATCTATTACCTTTTTTTTTGTCGAAAAAATCTATCACCTTGAATGCAAACAAATGTTTTTC CAAATGAAGCAAATTGCCCTTTCCACATTTGGTGCATCACAAACTTCTTTTTTAACAAGCTTATAGTAGTCCTAGCCCAT GGGCTGAGTTTTCTTCTGACCCAATATTCAGATCTG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0455500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAGAGATTTCATGGGTCTGAGCTCCAAAGAACCACTCTCTGTCATCAAGGAAGAAATCAAAAATGATGGGTGGAT AGACTCAGGTTTCACGAAGGGTTCGGTTGCACAATGGCCCTTCACGAACAAAGTGTCTGCTTTTCCCCATGTGATGTCTT TCAAGGTTTCTCAAGATGAAAGGACTAAAAGGATGGTGTCTGAACCCCAGAAATCTCTCAATCTCAACGAGCAAGGCGGC ATTCATTTTTCACTGGCGCCGCATCCGGTACAACATGATGGGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCTGCCCC CTTGGGAAACCCATTCCAGAAGAATCATTTTGCCGCTGCTGGTCAGAATATGAACGGTGCTAATGTAAAACTGCCACTTC TCGGGGGAAAACCTGTTACCGCACCTCATTCATCTCTTCCCACCATTGGTGCTGTTGCTGGAATGTCTGAATCATGTCTG AAAACATCTGCGCCTTCTGCCCCACTTACCATCTTCTATGCGGGTACTGTCAATGTCTTTGATGATATCTCTGCCGAGAA GGCACAAGCAATCATGTTGTTGGCGGCTGGCAATGTCTTATTCGGGGCTTCTAGCACGGCACAGCAAAAAGTTCAGGCAC CGAGCTCTAAGTTGGCTGGTGGTGATGTCTGTCCGCCTGCAAATACACCACCCTGCTCTGGTCTTTCAAGTCCTTTGTCT GTTTCGTCCCCTACCGGTGCACATTCAGGGAGTGGCTCAACTAGCACTGATGAATTTCTGGCAGCGAAAACAACTGGAGT TCCTACTGCTCCTGTTAGCATTGTGGAGCCGCGAAAAGCAGTCACCGCGGCCACTATGTTAACATCAGCGGTGCCTCAAG CTCGGAAAGCATCCTTGGCTCGATTTTTAGAAAAGCGCAAGGAAAGGGCGATGAATGCAGCACCATACAATAACCTCAAG AAGTCTGAGGAGTGTGCCAATGCATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0455500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MERDFMGLSSKEPLSVIKEEIKNDGWIDSGFTKGSVAQWPFTNKVSAFPHVMSFKVSQDERTKRMVSEPQKSLNLNEQGG IHFSLAPHPVQHDGKMFSVSNQAISAPLGNPFQKNHFAAAGQNMNGANVKLPLLGGKPVTAPHSSLPTIGAVAGMSESCL KTSAPSAPLTIFYAGTVNVFDDISAEKAQAIMLLAAGNVLFGASSTAQQKVQAPSSKLAGGDVCPPANTPPCSGLSSPLS VSSPTGAHSGSGSTSTDEFLAAKTTGVPTAPVSIVEPRKAVTAATMLTSAVPQARKASLARFLEKRKERAMNAAPYNNLK KSEECANA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR33077:SF42
33 327 295 1.2E-72 –
PANTHER
PTHR33077
33 327 295 1.2E-72
IPR040390
ProSiteProfiles
PS51320
162 197 36 16.426
IPR010399
SMART
SM00979
162 197 36 7.8E-16
IPR010399
Pfam
PF06200
164 196 33 4.8E-17
IPR010399
MobiDBLite
mobidb-lite
229 257 29 - –
MobiDBLite
mobidb-lite
233 257 25 - –
Pfam
PF09425
292 316 25 2.6E-13
IPR018467

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0455500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…