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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0459200 |
| Transcript ID | LotjaGi4g1v0459200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PLATZ transcription factor family protein; TAIR: AT2G01818.1 PLATZ transcription factor family protein; Swiss-Prot: sp|F4JTP5|STY46_ARATH Serine/threonine-protein kinase STY46; TrEMBL-Plants: tr|I3SVP5|I3SVP5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0459200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82996785..82999415) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAGTCTCTTCACATTCACAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTCTGTTTCTTCACTTCCTCTACAAG CCGCGTCTGCTACTACTGTGCAATCCAACCTCAAATCCAGAGAAATGGTAAGAAAATAATCAATTCTGTGTTTTCTGGAG TCTAAATTTTCATTGGTTATTCAAAAGTTTTGATTTTTATCTTTTAATAGATTGTAACTTGCTTGCAATACCATGATCAT TTCATTGTAATCATTGTAGTAAATTAGTAATCTTTCTATCAGTGTAAGATAGTCTCAGTTAAGTTTAGGATTGAGGGGTA TCAATCAATATGTCAAATTTGTAAATTGCATTTGCAGATTAGGTTGGTTTTTTACTTTTTTCATTGTGTCTTGAAATTTT TAGATTTGTGTGCCATTTTTAGGTAATATAAGTAGGTTTAGATTTCTTGGAGACTAATGTGATGGTAATTTTATTTAGGA ATGTTTACTATTTTGGTCCTTGATTGTTGAACTGTGTTTGGTTGTAGTGTGTTTTCTTGATTTCATTTTGTGGCTAATGG ATTGATTTTGTAGATGGGGCAGAATCTTTCACCAAAGGAAAGGAATAGAGATTGGATTAGAGCTCTTATGAGCAGTAGGT CTGGTTACTGTGATGAACACTTTGACCTTCGATCGAGTGAGAAGAATATTTTCTGTGTAGACTGTGCTGTTAGAGTTTGT AGGCACTGTAAGGAGGCTCATTCCCTCCACAGAAGCTTTCAGATATACAAATATTCCTATCAGGATGTTTTCCGCCATTC CGAGCTGCAGAAGTATTTCGACTGCGAGAATATTCAGGTTCTCTATTTTGTCAAAGGATAGTATTGAATTCCTTGTTAGA AATGATTGATTGATTTTGTACCCAATGTGAAACCAATTCAATTTCATGATGTCAATCTTATTCGTTGCTGGTTGTTTTCT TGATTTGTTTTGCTCTTATAGGTTATATATAACCTTGAATGATCTGATGGAAAATCATATGTAGTTTTAATTTTTCAAAT GGATTATGTAGTTCAAGTAGATGTTCTTTGGTGGACCTAGTGATAAAGTGTTGAAACCATTTATCTATTATCAGCTTTAA CCAATGAATGGATTACCCTGTGATTAATTTTCTAATGCTGTCGTCTGTGAAATAAGCTATTTTTATTTCTCTTTTGTTCT ATATTTGTTGTTGAACATTGTTGTTAAATACCTGAACCTCATTGTTTCATTGGTATATCTGACTCACTAAATCTATCTAT GCTCTCATTAGTAAGATCTGAATTTAATTTTGTAACTAAAACTGATCATCAATTAACAGAATTTTCTTCTTACAATGGTG ATACAATTTGGCAGACTTACATATCCAACAACGAAAGGATTGTGCATCTCAAACCCCGACCTGCAATTGGTAGACCTAAA GCTGTTGATCTATGCCCTGACTCAAAATCTAAAGATTACAACTTCTCAACAAAACTGAAATCAGGTGGTACTTGTGAAGA ATGTGGAAAACACTTGCCAGATGAGCGAAATTGCTTCTGCTCCATTACATGCAAGGTAACATGCCATGTCTGATTTATAT TAAAATTTTGTTGTTAGGTTTTATATCACTTTTGATTCAAATCATGTGCTATTGTTAGATCTCAGCACTTCCAGTGGATC CCCAAAACCAAATTCAAAATCACCTTTCTCAAAGTAGTCCAGTAAAACTTGAAGCTATTGACTGCACTATGAATGATGCT CATCATTCAGAACCTGAGTCATCTATCTCTGAAGCTGAGTCATTTGGGTGGGTTGAAGTCATGAATTTCAGAAAGCGGCC CAGAAAGACCACCCCGCAGAGGCCTATCTTTGTTTTCACGTCTTAGTGAGCGAGCCTTTGGTTTCTCAATTTGCACAGAA TCTTAGTCACGCTCACTCAAAAGCCAAGAGGCTTTTTTTAGCTTCTAACTAGAAGTTTTTTTGCAGCATTTCACCATGGA ACCAAACACAGTATTAGAAGTTATCACTAATCTATTGTTTTCTTTACTTCATTTCCTTTTATTTTTGCTTCCTACTTTCC ATTTTTGGAGAATAAGATTTCTTGAATATTTGAGGGATACTCATTTCCACCATATTATAACTTGGGAATTCTAGGTACAT TTGCCATGAGAAAAAGTTACAAGCTGATATTGATATTGTACAGCATTAAAGTAATGCTATTGACAGTATCTCTTATGGTC AATTAACAACTCTTTTACAGGGTAATTCAAAATTTTCGATTCTTTGCTTAGAAAATAATGGCCATGTGTCTTTTATTTGA TTTCTGTAAAAGGAGCTGAGAGTTATATATTGCTCTCACTATTCCCCATATTCAATTCTCGTTAACAGATACTTCCTCCG TTCCTATTTATCTGTCCAGAAAGAGAAGGTTCACACAAATTAAGAAAAGCAATTAATTGTGGTGATTTTCATAAAAGTAT TATTTGTTTTCCTATATCACCATTTTGATTGTATTTTATCTTTTTTCATTTGTTGCTTATGTAAGGGCATTTATTGGAAA AATATCAATTAATGCTCTCTTGAAACTCTAAGTGGACAGTTATATAGGAACAAAAAAAATTCTTCAAAGTG
CDS sequence (LotjaGi4g1v0459200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCAGAATCTTTCACCAAAGGAAAGGAATAGAGATTGGATTAGAGCTCTTATGAGCAGTAGGTCTGGTTACTGTGA TGAACACTTTGACCTTCGATCGAGTGAGAAGAATATTTTCTGTGTAGACTGTGCTGTTAGAGTTTGTAGGCACTGTAAGG AGGCTCATTCCCTCCACAGAAGCTTTCAGATATACAAATATTCCTATCAGGATGTTTTCCGCCATTCCGAGCTGCAGAAG TATTTCGACTGCGAGAATATTCAGACTTACATATCCAACAACGAAAGGATTGTGCATCTCAAACCCCGACCTGCAATTGG TAGACCTAAAGCTGTTGATCTATGCCCTGACTCAAAATCTAAAGATTACAACTTCTCAACAAAACTGAAATCAGGTGGTA CTTGTGAAGAATGTGGAAAACACTTGCCAGATGAGCGAAATTGCTTCTGCTCCATTACATGCAAGATCTCAGCACTTCCA GTGGATCCCCAAAACCAAATTCAAAATCACCTTTCTCAAAGTAGTCCAGTAAAACTTGAAGCTATTGACTGCACTATGAA TGATGCTCATCATTCAGAACCTGAGTCATCTATCTCTGAAGCTGAGTCATTTGGGTGGGTTGAAGTCATGAATTTCAGAA AGCGGCCCAGAAAGACCACCCCGCAGAGGCCTATCTTTGTTTTCACGTCTTAG
Protein sequence (LotjaGi4g1v0459200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQNLSPKERNRDWIRALMSSRSGYCDEHFDLRSSEKNIFCVDCAVRVCRHCKEAHSLHRSFQIYKYSYQDVFRHSELQK YFDCENIQTYISNNERIVHLKPRPAIGRPKAVDLCPDSKSKDYNFSTKLKSGGTCEECGKHLPDERNCFCSITCKISALP VDPQNQIQNHLSQSSPVKLEAIDCTMNDAHHSEPESSISEAESFGWVEVMNFRKRPRKTTPQRPIFVFTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 223 | 218 | 1.5E-61 | – | |
| PANTHER | 6 | 223 | 218 | 1.5E-61 | – | |
| ProSiteProfiles | 21 | 64 | 44 | 9.698 | ||
| Pfam | 66 | 156 | 91 | 5.9E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0459200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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