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LotjaGi4g1v0464800.1

Overview

Field Value
Gene ID LotjaGi4g1v0464800
Transcript ID LotjaGi4g1v0464800.1
Lotus japonicus genome version Gifu v1.2
Description transmembrane protein; TAIR: AT3G17950.1 transmembrane protein; Swiss-Prot: sp|Q6DR24|Y3795_ARATH Uncharacterized protein At3g17950; TrEMBL-Plants: tr|V7CUG1|V7CUG1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0464800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:83497427..83498400) extracted from Lotus japonicus Gifu genome v1.2.

CCATGGTGTTTGATTTGTGGATGACTGCAGCATTGCACTTAGCTTAATATATACTAGTATACTTACTAGTTACTACTAGT AGTATTTATGAATTAATTATATACTAGTATTATATTTAATTTGACAAGACTCGCTCCATGATAGGATAGCATAAGCATTA AGCACGACGGTGAGTTTGCTCATCCCTTCCCTAATTAGCACTCAACAGAAGCATGGTAGATCCGGCGGCTAGTGAATTGG TGCCACCACCATCTTCACCCACCAACTCTTCCATTTCTTCTTCTGATCTTGATACCGAGGTAATTCAACCCAATATAATA TTCCTTTAAGTTTTCCTTTTCAATTTCATCAATTCATTTTATTCTTTCTATAGTCTACGGGATCATTCTTCCATGACAGA AGCACCACTCTCGGCACACTCATGGGAGTAACCTTCCCAGTCCCACCCATTGCCTTCAGACCCCCTTCTCATTCTCCGAG CCCGATCATCGTCGCGGACCGCCGGAGGAGGTGGTGGCGCTTCTGCAGTCACGGTCAACCGACCCGTTCTTCGTTGGGTC AGTTCCTCGAGGTGGAACGCCGATACGGGACAGCGTTGTTTGCCGATGGAAGAGTTCTTCCGCCGGCTGTCATTGACGAC GGAGCATCTACGCCGGAAAGTCTTTGTAGTAGATTCCCGGTTTCGCTCACCGGGATCTGTAGCGGCGGTGCTGGATTTGG ATAATTGCTTAAGTAACCGGCTTATGCATTTTCAATATATGTTTAGTTTAAGAAAGAAAATGTCAATATATGTTTGTAAC AAAAAGTGTCAATGTATGTTATAACTTTTTTAAAAAATGCTATTCCTAGTTTAATTGATGTCCTTTCACGCCCAAATAAG CTCTTCCTTTTGTTCGAGGAGGGATGACCTTACTTGACTTTACCTTTCCTATTTGGTACTTAATTTATTAATGAATTTGT TATTTGTCCATTTA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0464800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTAGATCCGGCGGCTAGTGAATTGGTGCCACCACCATCTTCACCCACCAACTCTTCCATTTCTTCTTCTGATCTTGA TACCGAGTCTACGGGATCATTCTTCCATGACAGAAGCACCACTCTCGGCACACTCATGGGAGTAACCTTCCCAGTCCCAC CCATTGCCTTCAGACCCCCTTCTCATTCTCCGAGCCCGATCATCGTCGCGGACCGCCGGAGGAGGTGGTGGCGCTTCTGC AGTCACGGTCAACCGACCCGTTCTTCGTTGGGTCAGTTCCTCGAGGTGGAACGCCGATACGGGACAGCGTTGTTTGCCGA TGGAAGAGTTCTTCCGCCGGCTGTCATTGACGACGGAGCATCTACGCCGGAAAGTCTTTGTAGTAGATTCCCGGTTTCGC TCACCGGGATCTGTAGCGGCGGTGCTGGATTTGGATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0464800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVDPAASELVPPPSSPTNSSISSSDLDTESTGSFFHDRSTTLGTLMGVTFPVPPIAFRPPSHSPSPIIVADRRRRWWRFC SHGQPTRSSLGQFLEVERRYGTALFADGRVLPPAVIDDGASTPESLCSRFPVSLTGICSGGAGFG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 33 33 - –
PANTHER
PTHR33544:SF15
2 60 59 6.2E-47 –
PANTHER
PTHR33544
2 60 59 6.2E-47
IPR040344
MobiDBLite
mobidb-lite
12 33 22 - –
PANTHER
PTHR33544:SF15
70 102 33 6.2E-47 –
PANTHER
PTHR33544
70 102 33 6.2E-47
IPR040344
PANTHER
PTHR33544:SF15
101 143 43 6.2E-47 –
PANTHER
PTHR33544
101 143 43 6.2E-47
IPR040344

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0464800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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