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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0465800 |
| Transcript ID | LotjaGi4g1v0465800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase; TAIR: AT1G48420.1 D-cysteine desulfhydrase; Swiss-Prot: sp|Q6ZHE5|DCYD1_ORYSJ Putative D-cysteine desulfhydrase 1, mitochondrial; TrEMBL-Plants: tr|I3SQ12|I3SQ12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0465800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83654779..83659285) extracted from Lotus japonicus Gifu genome v1.2.
GAAATGACAAACGCAGATATAATTATTTTTGTTCCTGGTATCAAATCAAATATGAACAAAAGAATGAAACTGTAATGTTA ATTTAATGGCTACCCGGACGGAAGCTTTCAACTCAATCTCAACCCGCATCCGCAATCTATTCATGGCATCGTCAAGCTTC GACTTCCTCAGCGTGAAGCCCTACACTCCTCCTTCCTGGGCATCCCACCTCCACCCTTTACCTTCTCATATCTTCTCTCT TGCCCATGTTTGTATCTTTATCTTACTCAATCAACTATCTATTCCTTTCAATATAGTTAATTGATGAAATCAATTACCTC TCATCTCGTTGTTGCTGTTGTTCTCTGTCATATCGTATCAGCTTCCCACTCCAATTCACAGATGGAACCTTCCCAACTTG CCAGCGAATACGGAGGTGTGGCTCAAGGTGAATGAATTCACTCCTTCCTTCCTCTTTATTTGGACTGGGTTCCAGTTTCT CAATCGATTCATTCATTGCTTTGCTGACGGAGACGAAGATTTTGCAGCGTGACGACCTCTCTGGAATGCAATTGAGTGGG AACAAAGTCAGGAAATTGGAGTTCTTGATGGCCGATGCGATTGCGCAAGGTGCTGACTCTGTCATTACAATCGGAGGCAT CCAAAGCAACCATTGTCGTGCCACTGCCGTTGCTGCTAAGTATTTAAATCTTGACCCTTTTCTTATTCTCCGCACTTCTA AGGTAATCTAATTCTCATCTCATTACATTCTCAAACATCATTTTTTTTTTCTTTTCAATTTTTCCTTTTTATGCTTTTCT TAGCTCCTTGTTGACCAAGATCCCGGACTCATTGGTAATCTCCTGGTTGAGCGTTTCGTTGGAGCTCACCTTCAACTTAT ATCCAAGGAAGAATATGCGCAAATTGGAAGTGTCGTGGGTCTCCCTTTACTCTTTTACTTTCTCTTATTTGCTTCATACT TCCAATTCATTCCTGTTTCTCATCAGATTATTTCACAGATTCCCTTTCTCAATTGTATTTCTATGTGACTGGTACATATT TTGGAAGTAAAGTCTTTCCTGTTTACTGGCAACTCTTTTCTGAATCAGCTAAGATGCTATATTTTAATTCTGCATATTGC TCCATGATATTTATATTATTGTGTATTCAACTTTTCCATAGACACTTACCAATATCCTAAAAGAAAAGTTGATAAAGGAA GGGAGGAAGCCATACGTTATTCCTGTCGGTGGATCAAACTCTGTTGGAACATGGTGAGTGAGACTATCATATTAAGGTCA TTTCTTTTTATAACATTCTTAAGGTATTGATGATATTATCTACTGTTAGAAATGTAATATAACCATTCGTATCTCTCCAT TGAAGTGACCCAACAGTTTAGACTTTTTGGATAGTTGGTTGTTTAGAATTTGATCACTCTTGCCCTCATTTTCTTGGTAA AATTTCAACACGTTAGGCTGGACTTTTACTTTTCATGCTTCCAGTCCAAAAGGCTGTTTGCACGAGGAGTGTGTTAGAGA TGTAATATAAAACTAGTGCCTTTATTTAACCGAATAAACTTTTATGCTATCTAGTTCATGACATCTGTAAAGAGTATTTA TTATCTTTGGTTGGGTATTCTCATAAAATAGCGGTAAGAATAACCATTGAGTTAGAGGTGATGATTAAATAAAACCCTTC TCATAATATCTACTCCAGAATTTGAACTCCTAACGTTGTAGGTGAAGTTTCACTTGGTGGAACAGTTCACCCCTTAAAGG CCAGCTGTGTACAGTTCTCTCCCTTGATATACTTTGTCAATAATAGGACAAACACAACTAATGCTACATGTTTGGTTTTT GCAAATGTAATCTAAAATTTAATCATGTTTACTGCGTTTTTTATTCAACTTAGAACAAAACCAGTTATTCATGAGTTAAT GTCTGGGTAGACAATGATATCAGCCTTCAAAAATAAAAATCTGTGAGTGAAGATGTTTTTTCATGAATGTATTATTGTTT ATCAGCTATTTAATTTTTTTCTGCTGGTAATTGCTAAAAGAGATCTGAAAGTTCTAATTTTTGTTTGTCTAAACATCTCA ACATCCAACTTCGGTTGTTTTAATATTTCTTACTAAAAAGTATTCGTTATCAAGTTGGTGAGAACCTTAGTGATTAAAGT TTTGAACTGCTTAGTTTCCCATGTCTTGATTTTAGATGCTATAATATTTATTTATTTTATATTCTTATTATGATTAAATT ATTCTATTCAGGGGTTATATAGAGTCAGTTCGGGAAATTGAACAGCAGATTCAAAGTGGTACAAGCAATGTCAAGTTTGA TGATATTGTTGTGGCTTGTGGCAGGTTTTAATCTACTTGACTTATAATATTTTTGCCCTTGATTGGATTCTCTTTATATC TTTGCCCTTAACGATCATATTTTCCCCTTGGTTGGATTCTTTTTATATTAGAGGTGCTAATTTTTATACCTTCATGGCAT CTTAGAATATGTAAGTAACAATTTCCCTTCTAAAGTGTGTTTAACATGGTAAATCAGGATTTAGTGATGAAAATTTACAT TCAATGCTTGAGTTCTTATTTGTAAGATGTATTATATTTTAATTGAAACACCACGATATTTTCATCTATTTAACTTGCTA CATCTATTAATTTCCAGTGGAGGTACAATTGCTGGTCTATCACTGGGATCATCATTGAGTACCTTGAAAGCAAGGGTATG TCTTCCACGCAGAAGACTGACATAGTTCATGTTTTTGCATATTATTTATATCATTTATTGCTTCCTGCAGGTACATGCAT TCTCTGTTTGTGATGACCCAGATTACTTCCACGACTTTGTCCAAGGCTTGCTTGATGGACTCAAAGCTGGTGTTAACTCA AGAGATATTGTACACATACAAAATGTGAGTGCCTTAGTAAAATGGGGGGTAGAACAGGCATCCCCCATGTCGTAAAGATT TATCAGGTTGCTTTTGAAATTATACACATACTATTTCTTCTTCATGCTCTATTAAATTTTGGAGTTTTCCTTATCTAGAG GGGAAAGGAGTACTTGCTTGTAACTACTGTGCAAATCAATTGTCTAACTGGCAAACCTAATGTGCTTGTGTGACAAGTCA TGACAAGAATGTGTCTATGAATACATATATGTTTGTGATCTGGAAATCTTACTTCTTCAGTTGGGTTAACATTGATTTTT GATTGATGGTTTCTGTCTTCAGGCGAAGGGTCTTGGGTATGCAATGAACACTTCCGAGGAGCTTAAGTTTGTAAAAGAAG TTGCTGAAGCTACTGGTGTTGTTCTTGACCCAGTATACAGGTATTTATTTGTTCCCCACACTGTTTACTGTGAGAGTGCT CTCTTTGGATCTATTAAGAACAAAATTACTTCTTTATCTTCCTTTTTTCACTCACAGAAGACCATTCTTTGAACATCACA TGAATCTCTTGTTCACAAACTCTAGTTTTCTTTGTCTTATTTTAGTAGGATTATCTCTACTAATTAATTACTAGTCTATA GCTGTAAAAATAATTACTCCTTGGTAAGTGGATCCAAAAGCCCATGTCTATCTTGTGAACTTTGTGTAATCAAATTTTCT ACTTTTCATTTAATACTTCTTTTCAAGCACGATGCACGTAGTTATATGTTTTATGTTGAATATTGCTGATTTTACATGAC TTTGATATTCGGTTGTTAATACTTAATACCCTCTCAGCGGCAAGGCTGCATATGCTATGCTGAATGATATGAATGAAAAT CCAAAGAAATGGGAAGGGAGAAAGATCCTCTTCATACATACAGGTGGTCTCTTAGGATTGTATGACAAGGTCGATCAGCT GGCATCTTTTGTTGGGAATTGGCAGAAAATGGATGTTAATGAATCTATTCCTAGGCAGGATGGTACTGGAAAGATGTTCT AGAGAAGGAAAACGAGAAAACACTGTTATTGCTTGCATCTATGTTTTGTAGTATCTTACTCTAAATAAGTTGTATTTTAT AGCAATGGACTCACGGGATCCTGAAGTTACTATATGATAATAAAGATATCCGAAAAATAAAGTGATGATATGACAAATGA CCTCGGTCTTGCGTTTTCTTTAAAGGTTGATGAGTAAACTGAAGTTCTAATTCGAGAGAAGAAAAAACAAAGAATAGCAT TATACACTACAAAGTTAAATTTGACTTGAAGTGATTTCCTCACTTGAAGATAAAATAAATTATCACACTTGTGACTTGTC GATTGCAAAATTAATGTTTAAGAGTTAAATAACACCATAATTTGTTATGCTATATATCTTATGGTCTTAGTGGTGAAAAT TTCATTTACTTGTTATGCAAGCATATGATCATGATTTGCACAATTGACTTCTCAATCAAATGTGGGGATTTACTTTATTT GTGAACTCTTCATTTCAAATCCAACCAAAAGTCACCATATTTTTCTTCTTTTGCTTCTTATTTTTCGTTTAGAGTCTTAA TACATCCTAACTTTCACTTTCTTTTCC
CDS sequence (LotjaGi4g1v0465800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCCGGACGGAAGCTTTCAACTCAATCTCAACCCGCATCCGCAATCTATTCATGGCATCGTCAAGCTTCGACTT CCTCAGCGTGAAGCCCTACACTCCTCCTTCCTGGGCATCCCACCTCCACCCTTTACCTTCTCATATCTTCTCTCTTGCCC ATCTTCCCACTCCAATTCACAGATGGAACCTTCCCAACTTGCCAGCGAATACGGAGGTGTGGCTCAAGCGTGACGACCTC TCTGGAATGCAATTGAGTGGGAACAAAGTCAGGAAATTGGAGTTCTTGATGGCCGATGCGATTGCGCAAGGTGCTGACTC TGTCATTACAATCGGAGGCATCCAAAGCAACCATTGTCGTGCCACTGCCGTTGCTGCTAAGTATTTAAATCTTGACCCTT TTCTTATTCTCCGCACTTCTAAGCTCCTTGTTGACCAAGATCCCGGACTCATTGGTAATCTCCTGGTTGAGCGTTTCGTT GGAGCTCACCTTCAACTTATATCCAAGGAAGAATATGCGCAAATTGGAAGTGTCACACTTACCAATATCCTAAAAGAAAA GTTGATAAAGGAAGGGAGGAAGCCATACGTTATTCCTGTCGGTGGATCAAACTCTGTTGGAACATGGGGTTATATAGAGT CAGTTCGGGAAATTGAACAGCAGATTCAAAGTGGTACAAGCAATGTCAAGTTTGATGATATTGTTGTGGCTTGTGGCAGT GGAGGTACAATTGCTGGTCTATCACTGGGATCATCATTGAGTACCTTGAAAGCAAGGGTACATGCATTCTCTGTTTGTGA TGACCCAGATTACTTCCACGACTTTGTCCAAGGCTTGCTTGATGGACTCAAAGCTGGTGTTAACTCAAGAGATATTGTAC ACATACAAAATGCGAAGGGTCTTGGGTATGCAATGAACACTTCCGAGGAGCTTAAGTTTGTAAAAGAAGTTGCTGAAGCT ACTGGTGTTGTTCTTGACCCAGTATACAGCGGCAAGGCTGCATATGCTATGCTGAATGATATGAATGAAAATCCAAAGAA ATGGGAAGGGAGAAAGATCCTCTTCATACATACAGGTGGTCTCTTAGGATTGTATGACAAGGTCGATCAGCTGGCATCTT TTGTTGGGAATTGGCAGAAAATGGATGTTAATGAATCTATTCCTAGGCAGGATGGTACTGGAAAGATGTTCTAG
Protein sequence (LotjaGi4g1v0465800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATRTEAFNSISTRIRNLFMASSSFDFLSVKPYTPPSWASHLHPLPSHIFSLAHLPTPIHRWNLPNLPANTEVWLKRDDL SGMQLSGNKVRKLEFLMADAIAQGADSVITIGGIQSNHCRATAVAAKYLNLDPFLILRTSKLLVDQDPGLIGNLLVERFV GAHLQLISKEEYAQIGSVTLTNILKEKLIKEGRKPYVIPVGGSNSVGTWGYIESVREIEQQIQSGTSNVKFDDIVVACGS GGTIAGLSLGSSLSTLKARVHAFSVCDDPDYFHDFVQGLLDGLKAGVNSRDIVHIQNAKGLGYAMNTSEELKFVKEVAEA TGVVLDPVYSGKAAYAMLNDMNENPKKWEGRKILFIHTGGLLGLYDKVDQLASFVGNWQKMDVNESIPRQDGTGKMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 387 | 367 | 3.2E-202 | – | |
| PANTHER | 21 | 387 | 367 | 3.2E-202 | – | |
| PIRSF | 22 | 378 | 357 | 7.1E-112 | ||
| TIGRFAM | 50 | 371 | 322 | 4.8E-132 | ||
| SUPERFAMILY | 50 | 365 | 316 | 7.07E-65 | ||
| Gene3D | 51 | 363 | 313 | 1.4E-97 | ||
| Pfam | 52 | 359 | 308 | 4.4E-33 | ||
| Gene3D | 88 | 200 | 113 | 1.4E-97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi4g1v0465800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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