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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0465800 |
| Transcript ID | LotjaGi4g1v0465800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase; TAIR: AT1G48420.1 D-cysteine desulfhydrase; Swiss-Prot: sp|Q6ZHE5|DCYD1_ORYSJ Putative D-cysteine desulfhydrase 1, mitochondrial; TrEMBL-Plants: tr|I3SQ12|I3SQ12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0465800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83655364..83659049) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTGCCCATGTTTGTATCTTTATCTTACTCAATCAACTATCTATTCCTTTCAATATAGTTAATTGATGAAATCAATTA CCTCTCATCTCGTTGTTGCTGTTGTTCTCTGTCATATCGTATCAGCTTCCCACTCCAATTCACAGATGGAACCTTCCCAA CTTGCCAGCGAATACGGAGGTGTGGCTCAAGGTGAATGAATTCACTCCTTCCTTCCTCTTTATTTGGACTGGGTTCCAGT TTCTCAATCGATTCATTCATTGCTTTGCTGACGGAGACGAAGATTTTGCAGCGTGACGACCTCTCTGGAATGCAATTGAG TGGGAACAAAGTCAGGAAATTGGAGTTCTTGATGGCCGATGCGATTGCGCAAGGTGCTGACTCTGTCATTACAATCGGAG GCATCCAAAGCAACCATTGTCGTGCCACTGCCGTTGCTGCTAAGTATTTAAATCTTGACCCTTTTCTTATTCTCCGCACT TCTAAGGTAATCTAATTCTCATCTCATTACATTCTCAAACATCATTTTTTTTTTCTTTTCAATTTTTCCTTTTTATGCTT TTCTTAGCTCCTTGTTGACCAAGATCCCGGACTCATTGGTAATCTCCTGGTTGAGCGTTTCGTTGGAGCTCACCTTCAAC TTATATCCAAGGAAGAATATGCGCAAATTGGAAGTGTCGTGGGTCTCCCTTTACTCTTTTACTTTCTCTTATTTGCTTCA TACTTCCAATTCATTCCTGTTTCTCATCAGATTATTTCACAGATTCCCTTTCTCAATTGTATTTCTATGTGACTGGTACA TATTTTGGAAGTAAAGTCTTTCCTGTTTACTGGCAACTCTTTTCTGAATCAGCTAAGATGCTATATTTTAATTCTGCATA TTGCTCCATGATATTTATATTATTGTGTATTCAACTTTTCCATAGACACTTACCAATATCCTAAAAGAAAAGTTGATAAA GGAAGGGAGGAAGCCATACGTTATTCCTGTCGGTGGATCAAACTCTGTTGGAACATGGTGAGTGAGACTATCATATTAAG GTCATTTCTTTTTATAACATTCTTAAGGTATTGATGATATTATCTACTGTTAGAAATGTAATATAACCATTCGTATCTCT CCATTGAAGTGACCCAACAGTTTAGACTTTTTGGATAGTTGGTTGTTTAGAATTTGATCACTCTTGCCCTCATTTTCTTG GTAAAATTTCAACACGTTAGGCTGGACTTTTACTTTTCATGCTTCCAGTCCAAAAGGCTGTTTGCACGAGGAGTGTGTTA GAGATGTAATATAAAACTAGTGCCTTTATTTAACCGAATAAACTTTTATGCTATCTAGTTCATGACATCTGTAAAGAGTA TTTATTATCTTTGGTTGGGTATTCTCATAAAATAGCGGTAAGAATAACCATTGAGTTAGAGGTGATGATTAAATAAAACC CTTCTCATAATATCTACTCCAGAATTTGAACTCCTAACGTTGTAGGTGAAGTTTCACTTGGTGGAACAGTTCACCCCTTA AAGGCCAGCTGTGTACAGTTCTCTCCCTTGATATACTTTGTCAATAATAGGACAAACACAACTAATGCTACATGTTTGGT TTTTGCAAATGTAATCTAAAATTTAATCATGTTTACTGCGTTTTTTATTCAACTTAGAACAAAACCAGTTATTCATGAGT TAATGTCTGGGTAGACAATGATATCAGCCTTCAAAAATAAAAATCTGTGAGTGAAGATGTTTTTTCATGAATGTATTATT GTTTATCAGCTATTTAATTTTTTTCTGCTGGTAATTGCTAAAAGAGATCTGAAAGTTCTAATTTTTGTTTGTCTAAACAT CTCAACATCCAACTTCGGTTGTTTTAATATTTCTTACTAAAAAGTATTCGTTATCAAGTTGGTGAGAACCTTAGTGATTA AAGTTTTGAACTGCTTAGTTTCCCATGTCTTGATTTTAGATGCTATAATATTTATTTATTTTATATTCTTATTATGATTA AATTATTCTATTCAGGGGTTATATAGAGTCAGTTCGGGAAATTGAACAGCAGATTCAAAGTGGTACAAGCAATGTCAAGT TTGATGATATTGTTGTGGCTTGTGGCAGGTTTTAATCTACTTGACTTATAATATTTTTGCCCTTGATTGGATTCTCTTTA TATCTTTGCCCTTAACGATCATATTTTCCCCTTGGTTGGATTCTTTTTATATTAGAGGTGCTAATTTTTATACCTTCATG GCATCTTAGAATATGTAAGTAACAATTTCCCTTCTAAAGTGTGTTTAACATGGTAAATCAGGATTTAGTGATGAAAATTT ACATTCAATGCTTGAGTTCTTATTTGTAAGATGTATTATATTTTAATTGAAACACCACGATATTTTCATCTATTTAACTT GCTACATCTATTAATTTCCAGTGGAGGTACAATTGCTGGTCTATCACTGGGATCATCATTGAGTACCTTGAAAGCAAGGG TATGTCTTCCACGCAGAAGACTGACATAGTTCATGTTTTTGCATATTATTTATATCATTTATTGCTTCCTGCAGGTACAT GCATTCTCTGTTTGTGATGACCCAGATTACTTCCACGACTTTGTCCAAGGCTTGCTTGATGGACTCAAAGCTGGTGTTAA CTCAAGAGATATTGTACACATACAAAATGTGAGTGCCTTAGTAAAATGGGGGGTAGAACAGGCATCCCCCATGTCGTAAA GATTTATCAGGTTGCTTTTGAAATTATACACATACTATTTCTTCTTCATGCTCTATTAAATTTTGGAGTTTTCCTTATCT AGAGGGGAAAGGAGTACTTGCTTGTAACTACTGTGCAAATCAATTGTCTAACTGGCAAACCTAATGTGCTTGTGTGACAA GTCATGACAAGAATGTGTCTATGAATACATATATGTTTGTGATCTGGAAATCTTACTTCTTCAGTTGGGTTAACATTGAT TTTTGATTGATGGTTTCTGTCTTCAGGCGAAGGGTCTTGGGTATGCAATGAACACTTCCGAGGAGCTTAAGTTTGTAAAA GAAGTTGCTGAAGCTACTGGTGTTGTTCTTGACCCAGTATACAGGTATTTATTTGTTCCCCACACTGTTTACTGTGAGAG TGCTCTCTTTGGATCTATTAAGAACAAAATTACTTCTTTATCTTCCTTTTTTCACTCACAGAAGACCATTCTTTGAACAT CACATGAATCTCTTGTTCACAAACTCTAGTTTTCTTTGTCTTATTTTAGTAGGATTATCTCTACTAATTAATTACTAGTC TATAGCTGTAAAAATAATTACTCCTTGGTAAGTGGATCCAAAAGCCCATGTCTATCTTGTGAACTTTGTGTAATCAAATT TTCTACTTTTCATTTAATACTTCTTTTCAAGCACGATGCACGTAGTTATATGTTTTATGTTGAATATTGCTGATTTTACA TGACTTTGATATTCGGTTGTTAATACTTAATACCCTCTCAGCGGCAAGGCTGCATATGCTATGCTGAATGATATGAATGA AAATCCAAAGAAATGGGAAGGGAGAAAGATCCTCTTCATACATACAGGTGGTCTCTTAGGATTGTATGACAAGGTCGATC AGCTGGCATCTTTTGTTGGGAATTGGCAGAAAATGGATGTTAATGAATCTATTCCTAGGCAGGATGGTACTGGAAAGATG TTCTAG
CDS sequence (LotjaGi4g1v0465800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATTGAGTGGGAACAAAGTCAGGAAATTGGAGTTCTTGATGGCCGATGCGATTGCGCAAGGTGCTGACTCTGTCAT TACAATCGGAGGCATCCAAAGCAACCATTGTCGTGCCACTGCCGTTGCTGCTAAGTATTTAAATCTTGACCCTTTTCTTA TTCTCCGCACTTCTAAGCTCCTTGTTGACCAAGATCCCGGACTCATTGGTAATCTCCTGGTTGAGCGTTTCGTTGGAGCT CACCTTCAACTTATATCCAAGGAAGAATATGCGCAAATTGGAAGTGTCACACTTACCAATATCCTAAAAGAAAAGTTGAT AAAGGAAGGGAGGAAGCCATACGTTATTCCTGTCGGTGGATCAAACTCTGTTGGAACATGGGGTTATATAGAGTCAGTTC GGGAAATTGAACAGCAGATTCAAAGTGGTACAAGCAATGTCAAGTTTGATGATATTGTTGTGGCTTGTGGCAGTGGAGGT ACAATTGCTGGTCTATCACTGGGATCATCATTGAGTACCTTGAAAGCAAGGGTACATGCATTCTCTGTTTGTGATGACCC AGATTACTTCCACGACTTTGTCCAAGGCTTGCTTGATGGACTCAAAGCTGGTGTTAACTCAAGAGATATTGTACACATAC AAAATGCGAAGGGTCTTGGGTATGCAATGAACACTTCCGAGGAGCTTAAGTTTGTAAAAGAAGTTGCTGAAGCTACTGGT GTTGTTCTTGACCCAGTATACAGCGGCAAGGCTGCATATGCTATGCTGAATGATATGAATGAAAATCCAAAGAAATGGGA AGGGAGAAAGATCCTCTTCATACATACAGGTGGTCTCTTAGGATTGTATGACAAGGTCGATCAGCTGGCATCTTTTGTTG GGAATTGGCAGAAAATGGATGTTAATGAATCTATTCCTAGGCAGGATGGTACTGGAAAGATGTTCTAG
Protein sequence (LotjaGi4g1v0465800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLSGNKVRKLEFLMADAIAQGADSVITIGGIQSNHCRATAVAAKYLNLDPFLILRTSKLLVDQDPGLIGNLLVERFVGA HLQLISKEEYAQIGSVTLTNILKEKLIKEGRKPYVIPVGGSNSVGTWGYIESVREIEQQIQSGTSNVKFDDIVVACGSGG TIAGLSLGSSLSTLKARVHAFSVCDDPDYFHDFVQGLLDGLKAGVNSRDIVHIQNAKGLGYAMNTSEELKFVKEVAEATG VVLDPVYSGKAAYAMLNDMNENPKKWEGRKILFIHTGGLLGLYDKVDQLASFVGNWQKMDVNESIPRQDGTGKMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 305 | 305 | 1.6E-167 | – | |
| PANTHER | 1 | 305 | 305 | 1.6E-167 | – | |
| TIGRFAM | 1 | 289 | 289 | 3.1E-118 | ||
| PIRSF | 1 | 296 | 296 | 6.9E-95 | ||
| Gene3D | 2 | 281 | 280 | 2.0E-85 | ||
| SUPERFAMILY | 3 | 283 | 281 | 5.76E-55 | ||
| Pfam | 4 | 277 | 274 | 9.8E-28 | ||
| Gene3D | 6 | 118 | 113 | 2.0E-85 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi4g1v0465800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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