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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0465800 |
| Transcript ID | LotjaGi4g1v0465800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase; TAIR: AT1G48420.1 D-cysteine desulfhydrase; Swiss-Prot: sp|Q6ZHE5|DCYD1_ORYSJ Putative D-cysteine desulfhydrase 1, mitochondrial; TrEMBL-Plants: tr|I3SQ12|I3SQ12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0465800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83655364..83659143) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATCGTCAAGCTTCGACTTCCTCAGCGTGAAGCCCTACACTCCTCCTTCCTGGGCATCCCACCTCCACCCTTTACC TTCTCATATCTTCTCTCTTGCCCATGTTTGTATCTTTATCTTACTCAATCAACTATCTATTCCTTTCAATATAGTTAATT GATGAAATCAATTACCTCTCATCTCGTTGTTGCTGTTGTTCTCTGTCATATCGTATCAGCTTCCCACTCCAATTCACAGA TGGAACCTTCCCAACTTGCCAGCGAATACGGAGGTGTGGCTCAAGGTGAATGAATTCACTCCTTCCTTCCTCTTTATTTG GACTGGGTTCCAGTTTCTCAATCGATTCATTCATTGCTTTGCTGACGGAGACGAAGATTTTGCAGCGTGACGACCTCTCT GGAATGCAATTGAGTGGGAACAAAGTCAGGAAATTGGAGTTCTTGATGGCCGATGCGATTGCGCAAGGTGCTGACTCTGT CATTACAATCGGAGGCATCCAAAGCAACCATTGTCGTGCCACTGCCGTTGCTGCTAAGTATTTAAATCTTGACCCTTTTC TTATTCTCCGCACTTCTAAGGTAATCTAATTCTCATCTCATTACATTCTCAAACATCATTTTTTTTTTCTTTTCAATTTT TCCTTTTTATGCTTTTCTTAGCTCCTTGTTGACCAAGATCCCGGACTCATTGGTAATCTCCTGGTTGAGCGTTTCGTTGG AGCTCACCTTCAACTTATATCCAAGGAAGAATATGCGCAAATTGGAAGTGTCGTGGGTCTCCCTTTACTCTTTTACTTTC TCTTATTTGCTTCATACTTCCAATTCATTCCTGTTTCTCATCAGATTATTTCACAGATTCCCTTTCTCAATTGTATTTCT ATGTGACTGGTACATATTTTGGAAGTAAAGTCTTTCCTGTTTACTGGCAACTCTTTTCTGAATCAGCTAAGATGCTATAT TTTAATTCTGCATATTGCTCCATGATATTTATATTATTGTGTATTCAACTTTTCCATAGACACTTACCAATATCCTAAAA GAAAAGTTGATAAAGGAAGGGAGGAAGCCATACGTTATTCCTGTCGGTGGATCAAACTCTGTTGGAACATGGTGAGTGAG ACTATCATATTAAGGTCATTTCTTTTTATAACATTCTTAAGGTATTGATGATATTATCTACTGTTAGAAATGTAATATAA CCATTCGTATCTCTCCATTGAAGTGACCCAACAGTTTAGACTTTTTGGATAGTTGGTTGTTTAGAATTTGATCACTCTTG CCCTCATTTTCTTGGTAAAATTTCAACACGTTAGGCTGGACTTTTACTTTTCATGCTTCCAGTCCAAAAGGCTGTTTGCA CGAGGAGTGTGTTAGAGATGTAATATAAAACTAGTGCCTTTATTTAACCGAATAAACTTTTATGCTATCTAGTTCATGAC ATCTGTAAAGAGTATTTATTATCTTTGGTTGGGTATTCTCATAAAATAGCGGTAAGAATAACCATTGAGTTAGAGGTGAT GATTAAATAAAACCCTTCTCATAATATCTACTCCAGAATTTGAACTCCTAACGTTGTAGGTGAAGTTTCACTTGGTGGAA CAGTTCACCCCTTAAAGGCCAGCTGTGTACAGTTCTCTCCCTTGATATACTTTGTCAATAATAGGACAAACACAACTAAT GCTACATGTTTGGTTTTTGCAAATGTAATCTAAAATTTAATCATGTTTACTGCGTTTTTTATTCAACTTAGAACAAAACC AGTTATTCATGAGTTAATGTCTGGGTAGACAATGATATCAGCCTTCAAAAATAAAAATCTGTGAGTGAAGATGTTTTTTC ATGAATGTATTATTGTTTATCAGCTATTTAATTTTTTTCTGCTGGTAATTGCTAAAAGAGATCTGAAAGTTCTAATTTTT GTTTGTCTAAACATCTCAACATCCAACTTCGGTTGTTTTAATATTTCTTACTAAAAAGTATTCGTTATCAAGTTGGTGAG AACCTTAGTGATTAAAGTTTTGAACTGCTTAGTTTCCCATGTCTTGATTTTAGATGCTATAATATTTATTTATTTTATAT TCTTATTATGATTAAATTATTCTATTCAGGGGTTATATAGAGTCAGTTCGGGAAATTGAACAGCAGATTCAAAGTGGTAC AAGCAATGTCAAGTTTGATGATATTGTTGTGGCTTGTGGCAGGTTTTAATCTACTTGACTTATAATATTTTTGCCCTTGA TTGGATTCTCTTTATATCTTTGCCCTTAACGATCATATTTTCCCCTTGGTTGGATTCTTTTTATATTAGAGGTGCTAATT TTTATACCTTCATGGCATCTTAGAATATGTAAGTAACAATTTCCCTTCTAAAGTGTGTTTAACATGGTAAATCAGGATTT AGTGATGAAAATTTACATTCAATGCTTGAGTTCTTATTTGTAAGATGTATTATATTTTAATTGAAACACCACGATATTTT CATCTATTTAACTTGCTACATCTATTAATTTCCAGTGGAGGTACAATTGCTGGTCTATCACTGGGATCATCATTGAGTAC CTTGAAAGCAAGGGTATGTCTTCCACGCAGAAGACTGACATAGTTCATGTTTTTGCATATTATTTATATCATTTATTGCT TCCTGCAGGTACATGCATTCTCTGTTTGTGATGACCCAGATTACTTCCACGACTTTGTCCAAGGCTTGCTTGATGGACTC AAAGCTGGTGTTAACTCAAGAGATATTGTACACATACAAAATGTGAGTGCCTTAGTAAAATGGGGGGTAGAACAGGCATC CCCCATGTCGTAAAGATTTATCAGGTTGCTTTTGAAATTATACACATACTATTTCTTCTTCATGCTCTATTAAATTTTGG AGTTTTCCTTATCTAGAGGGGAAAGGAGTACTTGCTTGTAACTACTGTGCAAATCAATTGTCTAACTGGCAAACCTAATG TGCTTGTGTGACAAGTCATGACAAGAATGTGTCTATGAATACATATATGTTTGTGATCTGGAAATCTTACTTCTTCAGTT GGGTTAACATTGATTTTTGATTGATGGTTTCTGTCTTCAGGCGAAGGGTCTTGGGTATGCAATGAACACTTCCGAGGAGC TTAAGTTTGTAAAAGAAGTTGCTGAAGCTACTGGTGTTGTTCTTGACCCAGTATACAGGTATTTATTTGTTCCCCACACT GTTTACTGTGAGAGTGCTCTCTTTGGATCTATTAAGAACAAAATTACTTCTTTATCTTCCTTTTTTCACTCACAGAAGAC CATTCTTTGAACATCACATGAATCTCTTGTTCACAAACTCTAGTTTTCTTTGTCTTATTTTAGTAGGATTATCTCTACTA ATTAATTACTAGTCTATAGCTGTAAAAATAATTACTCCTTGGTAAGTGGATCCAAAAGCCCATGTCTATCTTGTGAACTT TGTGTAATCAAATTTTCTACTTTTCATTTAATACTTCTTTTCAAGCACGATGCACGTAGTTATATGTTTTATGTTGAATA TTGCTGATTTTACATGACTTTGATATTCGGTTGTTAATACTTAATACCCTCTCAGCGGCAAGGCTGCATATGCTATGCTG AATGATATGAATGAAAATCCAAAGAAATGGGAAGGGAGAAAGATCCTCTTCATACATACAGGTGGTCTCTTAGGATTGTA TGACAAGGTCGATCAGCTGGCATCTTTTGTTGGGAATTGGCAGAAAATGGATGTTAATGAATCTATTCCTAGGCAGGATG GTACTGGAAAGATGTTCTAG
CDS sequence (LotjaGi4g1v0465800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTTCCCACTCCAATTCACAGATGGAACCTTCCCAACTTGCCAGCGAATACGGAGGTGTGGCTCAAGCGTGACGA CCTCTCTGGAATGCAATTGAGTGGGAACAAAGTCAGGAAATTGGAGTTCTTGATGGCCGATGCGATTGCGCAAGGTGCTG ACTCTGTCATTACAATCGGAGGCATCCAAAGCAACCATTGTCGTGCCACTGCCGTTGCTGCTAAGTATTTAAATCTTGAC CCTTTTCTTATTCTCCGCACTTCTAAGCTCCTTGTTGACCAAGATCCCGGACTCATTGGTAATCTCCTGGTTGAGCGTTT CGTTGGAGCTCACCTTCAACTTATATCCAAGGAAGAATATGCGCAAATTGGAAGTGTCACACTTACCAATATCCTAAAAG AAAAGTTGATAAAGGAAGGGAGGAAGCCATACGTTATTCCTGTCGGTGGATCAAACTCTGTTGGAACATGGGGTTATATA GAGTCAGTTCGGGAAATTGAACAGCAGATTCAAAGTGGTACAAGCAATGTCAAGTTTGATGATATTGTTGTGGCTTGTGG CAGTGGAGGTACAATTGCTGGTCTATCACTGGGATCATCATTGAGTACCTTGAAAGCAAGGGTACATGCATTCTCTGTTT GTGATGACCCAGATTACTTCCACGACTTTGTCCAAGGCTTGCTTGATGGACTCAAAGCTGGTGTTAACTCAAGAGATATT GTACACATACAAAATGCGAAGGGTCTTGGGTATGCAATGAACACTTCCGAGGAGCTTAAGTTTGTAAAAGAAGTTGCTGA AGCTACTGGTGTTGTTCTTGACCCAGTATACAGCGGCAAGGCTGCATATGCTATGCTGAATGATATGAATGAAAATCCAA AGAAATGGGAAGGGAGAAAGATCCTCTTCATACATACAGGTGGTCTCTTAGGATTGTATGACAAGGTCGATCAGCTGGCA TCTTTTGTTGGGAATTGGCAGAAAATGGATGTTAATGAATCTATTCCTAGGCAGGATGGTACTGGAAAGATGTTCTAG
Protein sequence (LotjaGi4g1v0465800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLPTPIHRWNLPNLPANTEVWLKRDDLSGMQLSGNKVRKLEFLMADAIAQGADSVITIGGIQSNHCRATAVAAKYLNLD PFLILRTSKLLVDQDPGLIGNLLVERFVGAHLQLISKEEYAQIGSVTLTNILKEKLIKEGRKPYVIPVGGSNSVGTWGYI ESVREIEQQIQSGTSNVKFDDIVVACGSGGTIAGLSLGSSLSTLKARVHAFSVCDDPDYFHDFVQGLLDGLKAGVNSRDI VHIQNAKGLGYAMNTSEELKFVKEVAEATGVVLDPVYSGKAAYAMLNDMNENPKKWEGRKILFIHTGGLLGLYDKVDQLA SFVGNWQKMDVNESIPRQDGTGKMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 2 | 326 | 325 | 1.1E-103 | ||
| SUPERFAMILY | 2 | 313 | 312 | 2.62E-64 | ||
| Gene3D | 2 | 311 | 310 | 1.1E-96 | ||
| PANTHER | 3 | 335 | 333 | 2.1E-187 | – | |
| PANTHER | 3 | 335 | 333 | 2.1E-187 | – | |
| TIGRFAM | 3 | 319 | 317 | 1.3E-130 | ||
| Pfam | 4 | 307 | 304 | 7.8E-33 | ||
| Gene3D | 36 | 148 | 113 | 1.1E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi4g1v0465800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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