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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0008500 |
| Transcript ID | LotjaGi5g1v0008500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H; TAIR: AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|I3T7V1|I3T7V1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0008500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1880440..1883044) extracted from Lotus japonicus Gifu genome v1.2.
GCGAAGTCCCACGGTGAGTATTTTACTGTTTTTCTAGGGTGGGATAGATCAGAAGCGAGCAAGTATGGTAGTTTCCTCCA TATTCGTGTGTGGGTAAGAGTTGATGCGCCTTTGCGTCGTGGATAGATGCTACTAGATGATTGGGGGACCTCCGTTTAAG GCCACTTTCAAGTAAGAGAAGTTTTTTTAACTTCTGCTACCGAAGTGGAAGGCTTGACCATGTACATCGTGATCGTGGTG CTGATTCAAAGGACACACCCTTCCCTTTACGCTTCGCGCGAATGAGGATAGATTTTTAGGATCGAGGTTGAGAGGCAATG GCGAAAGACGTGACCAAAAACAGGTTTCTAATTAAAGGAATTCATATGATAATATTAAGGAAGAGGGAAAGAGGACCGGT TCAGGTGGTGTGGAGTTAGTTGAAGAAAATTATTCAGAAACAAGGACCATGAAGGAGGTTGTAAAATCACACTCGGATGA AAGCACTATAGGAAAAGTGGTGGTAAATGAACCTCTCCAGAGTTCAGGGGTATGCACAGGTATATCCAAGATTGCTACAC GTGGGCGTATGAAGGTGGTGGACAAGCCTCTCTCGGCGACGGGGCATGGATCATCTTCAGACAGATTCAGTTCTCAAGCT AGGTTGTTCGCCCTTTTGGCACTCACGTAGGGAGGACATGAGCTCGGGTTGGAGGCTCTCGTATGAATACCAGGGAGGGA GGGCAGGACCAGAATGTCAGAAAGAGGCCAAGCGTATCGTCTTCCGCGTTTGGAGATGGGAGCTCGAGGATCTCTTCCCA TTGAAGAAGATTATCTCAAATAGTGGATTGGGCTCGGTGGAGGTTGCAGGCCCCGCCCACTTCAGTTTGGTATGTTGGCA ACTGCAACGACATACCTTTTCGATGTTTTTTCATCCATGGTAACATAGGCTCTTGGTTTCCAGTTAGTGTTATTGTTGGC TATTGATCTTTGTTTCCATTTGGTCTATCTCGAGATGGATTGTTTACAATTGTTTTGAGTTTTGGAGGAAGCATTCTGAC GAAAGTTCTTAACTTATTACTCTCATTAAGGATTGTCGTCTTCTTGCTTTAAAATTTGATTTTATTGAGATTTCGTTAAT TTGTATGAGTGACAATAATGCTACTGATTATCTTTGTTTGGGTAGAAAACATTCCTCCGGGTTTTCTCCCTTTTATTTAG CTTGATGTATCTTTGAGTTTATTTCTTATTAATTAATGATGTTGTTTAAAAAACATGAATATGCATCTACAATATCACCA GGCCATGCACCATAGGTGCTTGAAATAAACACTGGTTGGCAATGGATTTGGCGTCTCAGGGGACCTTACAAAATCATTTT CTTAATCTGGTTGGGCTGTCACATTGCGTTGCCAGTGAACCATCTTCTTTTTTCCTGCCATATGGCAGCGTCGTCAGTGT GTTCTAGGTGCAACCTGTACCCTGAAACGGTTTTGCATTGTCTTTGCGATGCTGAGGGTTTGGCTATGTCTAGGGCTTAT TCCGAGACATGGCTCTTTCAGCGTGTTGGCTCTGTGTGACTGGTTCAAGCAGGTTCTTGGTGAGGCTGAGGTGACGACGT TAGCTGCTATTTGAGAGATTTGGACAGCGCAGAATAGGGCGTTGTTTGATCAAGCGGTATTGCCGGAGGACCGTCTCGTG CTGATAATTATTGAGTTCAAGCAGCTGATTCTTCACGCTTGGCCTATGGGGCAGCGTCCTTCTCAGCCGCGAATGGTGTC GTGGATAGCGCCTAGTGCCTCTGAGATTGCTGTTAACTGCGATGGTAGCTCGCTTGGGGTCTCGGTTCGATCTGGTTTCG GTGGCTGTCTTAGGGATGATCGAGGCAGTTGGCTTGCTGGTTTTACGGGTTTTCGCGGGCACGCATCGGTGCTGCATATG GAGCTGCTGGCCATTTTTCATGATTTGGAGCTCGCTTGGAACCTGGGGCACTGTCATGTGGTGTGTTTTTCCGACTCAAT GCTGGTTGTTTCTCTGGTGCGTGCTCCCCCTACGCAACACCATGTGTTTCCTGTCCTCATTAGCAATATCTATGAGCTGT TGAAGCGCGCTTGGGTGGCTCGGGTGGAGCATATCCTTTGTGAAGGGAACTCTTGTGCCGATTTTTCGGCTAAGGTAGGT GCATCCCAAGATTTACAACTCCTCCATGTTCAGGATCCCCTCCCTGGCATTGAGGCTTTACTCCTGGCCGACTCCTTGAG TACCATGGTAGTTAGGCAGTAGAGGATTATTTTCTGTTTATTTTGTTTTGGTTCTCTTTATATTAAGCATAAAAAAGGTG CTTGAAGTTGTCTTGTTCTAATGTAATGCTTTGATGATCCTTGTTAATTTAGAATTATTTTAGAGTTAATAAGTTAGTTT GATTAAGTTCAATTAAAAGATTATAGTATATGTCATCCTAATCAGCTTAATTCAATTAAAAGTTTATTTCGCATCAATGT TGTAGGAAAGACTGTAAGAAAAGTGAAGCTTAATTGTATCCCTCGCGAGTGTAACGGCGTAGCTGACTACTTGGCTAGGA AGGGTGCAACTGCTCGGGCGTCTGGAGCGTGGACCCTTAACTCCC
CDS sequence (LotjaGi5g1v0008500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCAGCGTCCTTCTCAGCCGCGAATGGTGTCGTGGATAGCGCCTAGTGCCTCTGAGATTGCTGTTAACTGCGATGG TAGCTCGCTTGGGGTCTCGGTTCGATCTGGTTTCGGTGGCTGTCTTAGGGATGATCGAGGCAGTTGGCTTGCTGGTTTTA CGGGTTTTCGCGGGCACGCATCGGTGCTGCATATGGAGCTGCTGGCCATTTTTCATGATTTGGAGCTCGCTTGGAACCTG GGGCACTGTCATGTGGTGTGTTTTTCCGACTCAATGCTGGTTGTTTCTCTGGTGCGTGCTCCCCCTACGCAACACCATGT GTTTCCTGTCCTCATTAGCAATATCTATGAGCTGTTGAAGCGCGCTTGGGTGGCTCGGGTGGAGCATATCCTTTGTGAAG GGAACTCTTGTGCCGATTTTTCGGCTAAGGTAGGTGCATCCCAAGATTTACAACTCCTCCATGTTCAGGATCCCCTCCCT GGCATTGAGGCTTTACTCCTGGCCGACTCCTTGAGTACCATGGTAGTTAGGCAGTAG
Protein sequence (LotjaGi5g1v0008500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQRPSQPRMVSWIAPSASEIAVNCDGSSLGVSVRSGFGGCLRDDRGSWLAGFTGFRGHASVLHMELLAIFHDLELAWNL GHCHVVCFSDSMLVVSLVRAPPTQHHVFPVLISNIYELLKRAWVARVEHILCEGNSCADFSAKVGASQDLQLLHVQDPLP GIEALLLADSLSTMVVRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 176 | 174 | 1.2E-33 | – | |
| PANTHER | 3 | 176 | 174 | 1.2E-33 | – | |
| ProSiteProfiles | 17 | 147 | 131 | 11.132 | ||
| Gene3D | 19 | 147 | 129 | 5.0E-18 | ||
| SUPERFAMILY | 21 | 149 | 129 | 2.53E-16 | ||
| CDD | 23 | 143 | 121 | 5.47128E-34 | – | |
| Pfam | 24 | 143 | 120 | 9.4E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi5g1v0008500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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