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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0017000 |
| Transcript ID | LotjaGi5g1v0017000.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT2G16230.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9M069|E137_ARATH Glucan endo-1,3-beta-glucosidase 7; TrEMBL-Plants: tr|I1M8D6|I1M8D6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0017000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3247406..3250652) extracted from Lotus japonicus Gifu genome v1.2.
GCAAGTAAGTGTTCTTGAAACCTTGAAATAATCCCACTTACTTGAAACTTATGCACCACTCTTAAGATTCACAAGACCGA GTCGGGTGAGGTGAAGACAAAATGTTTTTCAACAGTGCTGCTCTTAAGATTCGAACTGTTGACAGTTCAAAGTTCAAACA ACCACTTTTTACCACTGGACGAGACGTAGCAAGTTGAAACTTAGATTTTAGATATTTTGTGTCTTTTAATTTGCTATTAA CGTGAACAAGAAAGTGTAGTGATAATTGCCACTATTATTCTGTGCAGATTCTGAACCGTTCATCGGCGTGAACTATGGCC AAGTCGCCGATAACCTACCACCGCCGTCAGCCACGGCGAAGCTTCTCCAGTCCACCGCCATCGGAAAGGTCCGGTTATAC GGAACCGACCCGGCGATAATCAAGGCCCTAGCCAACACCGGGATCGGAATCGTGATCGGAGCAGCGAACGGCGACATTCC GGCGCTCGCCTCCGACCCGAACTTCGCGAAAACCTGGGTGAGCTCCAACGTCGCTCCTTACTACCCCGCCAGCAACATCA TCCTCATCACCGTCGGCAACGAGGTGATAACCTCCAATGACACCGGCCTCGTGAACCAGATGCTGCCGGCAATACAGAAC GTGCAAAACGCCCTCGACGCCGCTTCGTTTGGTGGTGGCAAAATCAAGGTCTCGACGGTGCATTCCATGGCGGTTTTGGG TAACTCTGAGCCTCCTTCTGGCGGGAAATTTCACGCTGAATACGACACCGTTTTGCAGGGGTTGTTGTCGTTTAACAATG CTACAGGGTCACCCTTTGCTATCAACCCTTACCCTTACTTTGCCTACAAGAGTGACCCTGGTAGACCTGATAACCTTGCG TTTTGCCTCTTCCAGCCCAACTCGGGCCGGGTTGACCCAAACACCAATCTCAATTACATGAACATGTTTGATGCTCAGGT GAGTCTAAATATGAACTGTGATGGTTACAATTTTACTTGAAAATAGCTTATCGCGTGTTTATAAACTGTTTTGAACTTAT TTTCATAAATCGCTCATATTAGCTTATGATAAGCACTTATTGCTTAGTTAAGTTGTTTTTACTTTATAGTAACATAAGTA ATTATGTGATTTTACAATTTAACTTGCAAAAATAAATTCTCTCATAAATGTATCCAAATTTAATCACTTAATTTCAACTC ACTTTTGTCAAAATTTATTTTACCAAAATCAATTCTATCACCACTATCGCTTATGACATGTTTATAAACCATATTGAGCT TATTTTCATAAATCAGTCGGATTCGCTTATGATAAGCTCTTATTGCGTAGTTAGGTTGTTTTTTTTTGGTGCGTGCTTAG TTAGGTTGTTTACCGTACCATTATGTGATTTTACAATATTACCTTACAAAAATAAGTTTTCTCATAAATGTATCCAAATT TTAATTTTAATCGCTAAATTTGAACTCGCTTTTGTCAAAATTGATTTTACCAAAATCATTTCTATCCACGATCAATTATT AGAATGTTGATCCAATCACACTCATAGTGTCTTTTAATTGTTAATGTATGTTATGATATGTGTCTTGTGCCATATAGGTG TTTAATGTTATGTTGTGTTGTGTGCAGGTGGATGCTGTGAGGTCTGCGTTGGATTCTCTGGGGTTTAAGAATGTTGAGAT TGTGGTGGCCGAGACTGGGTGGCCTTACAAAGGAGACAACGACGAGGTTGGTCCTAGTCTTGAGAATGCTAAGGCTTACA ACGGTAATCTGATTGCGCACCTTCGATCCAAGGTTGGAACCCCACTGATGCCAGGGAAATCAGTGGACACTTACCTCTTT GCTTTGTACGATGAGGACTTGAAGCCAGGACCTGCTTCTGAGAGAGCATTTGGGCTTTACAACCCTGATCAATCCATGAT CTATGATGCTGGCCTCTCCAAGCAACAACAGCAGAGTAGTAGCCCTTCCCCTGTGGTTGCCCCGGTATGGACATATATTT GAATTCCACTTGCATAACATGAGTACTTTAATATTATCTTACACTTCTATATATGACCATGGATTGATCCGATGCTGTCA TTGATTGAGTAACCAGCTTAAATTGTTACATGGACATGAAGTATATCTGCATAAAGCATCATTTTTCTTAGTTCTTAATA TCTTGAAGCTGTTCTATAGAGTAGTGCTTCTAGTCTAGAGACTAGTGTTTAACAAAATGTGTTTCTGAATTTGATTGAAG ACTCCGGATGTGTCAAATTCTCCAGCGACTCAAACTCAAGTCCCAGTGGTGATCCCCCCGGTATATATATCTGAATTCCA TGCATGATGACTATACTATTATCAATTTATCATTTTTTTTCTATATATAACCTTTGATTAGTCGAATACTGTCATTGATT GATTAACCAGCTGAAATTGTTACATGGGCATGAACACCATATATGCATAAAGCATCATTTTTCTTAGTTGTCAATATCTT GAAGCTGTTCTAGAGTAGTACTTCTAGTCTAGAGACTAGTGTTTAACAAAATGTATTTCTGAATTTGATTGAAGACTCCG GATGTGTCGAAATCTCCAGTGACTCAAACTCGAGCGCCAACAGGCCCAAGTCCAACGCCAAATAAAGCGGAATCCTTAAA CCGACACGACGCCCCCATTTTGCAATCTTTAATCATGTTCACTCTTCTCATCTTAAAGCTGTTCTAGTGTAGAGTAGCTT GTGGTTGTATTTAATAATGTAATATTTCTTAATTTTATTGAAGACTACTCCGGATGTGTCAAAATCTCCTGTGAATCCGA CCCCAAGAGTTTCAAGTCCAACGAAACCAAATAATAGTGCAACATGGTGTGTGCCAAAAGCAGGAGTGGCAGATGCAGAG TTACAAGCAAATTTGGATTATGCTTGCGGACAGGGGATAGATTGTAGCTCAATCCAACCAGGAGGAGCTTGCTTTGAACC AAACGCATTAGTGAACCATGCTGCATATGCCATGAATCTCTTGTATCAAAAGTCTGGGCGGAATCCATTCAGTTGTGATT TCTCGCAAACTGCCACTCTATCAACATATAATCCAAGTATGTACCAATGTGATTTCTGTTCAACATGCTTTCTGCCTTTC CCATCTTTGAAAGTTGAAACATTGTGGGGTTCGGGCCTTTTTTATTGGAAACATGTTGATAGATATCCCATAAGGGTGTC TACACTTTAAATACAAAGAAATAATAGGAAGAGCAGGGTTAAATTAA
CDS sequence (LotjaGi5g1v0017000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCCGGCAATACAGAACGTGCAAAACGCCCTCGACGCCGCTTCGTTTGGTGGTGGCAAAATCAAGGTCTCGACGGT GCATTCCATGGCGGTTTTGGGTAACTCTGAGCCTCCTTCTGGCGGGAAATTTCACGCTGAATACGACACCGTTTTGCAGG GGTTGTTGTCGTTTAACAATGCTACAGGGTCACCCTTTGCTATCAACCCTTACCCTTACTTTGCCTACAAGAGTGACCCT GGTAGACCTGATAACCTTGCGTTTTGCCTCTTCCAGCCCAACTCGGGCCGGGTTGACCCAAACACCAATCTCAATTACAT GAACATGTTTGATGCTCAGGTGGATGCTGTGAGGTCTGCGTTGGATTCTCTGGGGTTTAAGAATGTTGAGATTGTGGTGG CCGAGACTGGGTGGCCTTACAAAGGAGACAACGACGAGGTTGGTCCTAGTCTTGAGAATGCTAAGGCTTACAACGGTAAT CTGATTGCGCACCTTCGATCCAAGGTTGGAACCCCACTGATGCCAGGGAAATCAGTGGACACTTACCTCTTTGCTTTGTA CGATGAGGACTTGAAGCCAGGACCTGCTTCTGAGAGAGCATTTGGGCTTTACAACCCTGATCAATCCATGATCTATGATG CTGGCCTCTCCAAGCAACAACAGCAGAGTAGTAGCCCTTCCCCTGTGGTTGCCCCGACTACTCCGGATGTGTCAAAATCT CCTGTGAATCCGACCCCAAGAGTTTCAAGTCCAACGAAACCAAATAATAGTGCAACATGGTGTGTGCCAAAAGCAGGAGT GGCAGATGCAGAGTTACAAGCAAATTTGGATTATGCTTGCGGACAGGGGATAGATTGTAGCTCAATCCAACCAGGAGGAG CTTGCTTTGAACCAAACGCATTAGTGAACCATGCTGCATATGCCATGAATCTCTTGTATCAAAAGTCTGGGCGGAATCCA TTCAGTTGTGATTTCTCGCAAACTGCCACTCTATCAACATATAATCCAAAATACAAAGAAATAATAGGAAGAGCAGGGTT AAATTAA
Protein sequence (LotjaGi5g1v0017000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPAIQNVQNALDAASFGGGKIKVSTVHSMAVLGNSEPPSGGKFHAEYDTVLQGLLSFNNATGSPFAINPYPYFAYKSDP GRPDNLAFCLFQPNSGRVDPNTNLNYMNMFDAQVDAVRSALDSLGFKNVEIVVAETGWPYKGDNDEVGPSLENAKAYNGN LIAHLRSKVGTPLMPGKSVDTYLFALYDEDLKPGPASERAFGLYNPDQSMIYDAGLSKQQQQSSSPSPVVAPTTPDVSKS PVNPTPRVSSPTKPNNSATWCVPKAGVADAELQANLDYACGQGIDCSSIQPGGACFEPNALVNHAAYAMNLLYQKSGRNP FSCDFSQTATLSTYNPKYKEIIGRAGLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 335 | 335 | 9.1E-159 | – | |
| PANTHER | 1 | 335 | 335 | 9.1E-159 | – | |
| Gene3D | 1 | 225 | 225 | 1.7E-78 | – | |
| Pfam | 2 | 213 | 212 | 8.4E-53 | ||
| SUPERFAMILY | 2 | 214 | 213 | 3.39E-56 | ||
| MobiDBLite | 216 | 256 | 41 | - | – | |
| SMART | 259 | 342 | 84 | 1.2E-37 | ||
| Pfam | 259 | 330 | 72 | 2.7E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0017000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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