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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0018700 |
| Transcript ID | LotjaGi5g1v0018700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase complex subunit SAP30; TAIR: AT1G19330.2 histone deacetylase complex subunit; Swiss-Prot: sp|O75446|SAP30_HUMAN Histone deacetylase complex subunit SAP30; TrEMBL-Plants: tr|A0A151RBL7|A0A151RBL7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0018700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3587629..3590750) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTCACTCACACCCAAACGTCACTTTCTCTCTCTTCTTTCTCTCTCCTCTATCTACTTCATTTTCGTTTCTCTGAATT TCTCTTCTCACAATCAAGCAATGCAAATGCATGATCTCTTCTTTTTCTTCTTCTCTGCTTCTTCGATTTCTGATTAATAA TTAGGGTTACTGTTACTACTATTTTTTCAATTTTGGGGGAAAATGCTGGAAGCAACAATGGAAAGCTCTTCAGTCAATGG TGGTGGTGATCGATTCTCTCAGTTGCAGAGCTGTGGAGATAGCAGCGAAGAAGAGCTCTCCGTGCTCCCTCGTCACACCA AGGTGGTTGTCACCGGAAACAACCGCACCAAATCCGTACTCGTTGGTCTTCAGGGAGTTGTCAAGAAAGCCGTTGGCCTC GGTGGTTGGCATTGGCTGGTAACTTTCTTCACCAATTTTGAATAAGAAAATGGTTATTATCTGAATCTAATTTTGGATTG TTAATGTGGGTTTCTTTCTGTTTTTGGAATTATAGCAAGTTGTTTATAGCAATTTCGGTATATTTTAATTTATTTAACTT TTTTTGTGTGGCTATTTTGTGATCCGTTTAATGACTAAAATCTTATATTTTTTGTTTAAAATATTAATGAAGACTTATCC AAATTAATTTTTTTTCTTCAAATGATAATCCTTTCATGTCTTATCCAAATCATTTTAGGGGCATTTACTAAATTTTGAAA TTTCCATGTTCTGGGGTTATCCAAGTTGCAATTTGATTGCTTTGAATTGTATTTACACTAAGTATCTTACTTTATCTTTG GATCTGGGTCTGGGGTTTAAGGAGTTCCTAAAAAAAATCAGTTGTTGTTGTTTTTTGTTTTTAGTGATCTTGTCTTGGGT TGTGGGGTTAGTAATTCTTAAATGGGTTATTAATTTTTGTATGTTCAGTGATGTATTTGTTTTGAACTGAGTAGTATTTT AACGTATTTTTGACAATTTTTCCTATTTTATTGGTCTTTGCTTGATGGTTTTTTCTCCAGCAGGTGTTAGTGTTTGATAT CAGATTATCACCTCTTCGCTACATGCATGCTCTGATTATGAATCTTCTCTTTTTATTCTAGATAAAATTATGAAATAAGG AGATGAGTTATTATGTGCTGAAATCAATAGTCCTTCATATCCTACTTTAATCTGAATCAATGTTACTTTTAGACACATTT GGATTCTGAACAAGAACTCTATTGTTGGGTGTGGAGAGAATTTCAATTTTTCATCTACAATTATGCTTGTTGTGCAGCAT ATATTTGGTTTTATTCCCTGGTTATTTGGGAAACCATTTGTTCTATCATGCATGATGATTGCTTAATATTCTGCTTGTTA CAAAAATGTGCAGGTTCTTACTAATGGTATTGAAGTGAAGCTGCAGAGGAATGCCCTTAGTGTGATTGAAGCACCCACCG GGAATGAGGAAGATGATGACCTTGAATTTGAAAATACGCAGTGGAATGGATCCGATATGGGTGGGTTACTGTTCTTTCTC TATGTTTCCAGTTTTTTTTTTCAACTTAATTTGAAAATTATGTGTTGATTTGTAAAGGTTGTTTAATTTGATACGTCTTA TATTATCTGTCTTGCATGTTCAGTGGTACTAGAGTTATGGTTTATAGCTTGCATAAATTTTTTTCATTTTATTTTCTCCT TCAATGTAACTATTTATTATTCCTGGCTTAATTCCTACTTGACCCTCAGTATTGAAGGTAGTGGATGAACTGTAACATTG TATTTTTGTGACTTTTTTTGCTGTGGTTTTCCATGTCTCTGTCTGTGAGTCTGGGATGTTACATTGGATCCATTTATGCA ATTGTTTCTTTGCCTTTTGCTTTTGACTATTTCTTTCAGTAGGCTCTATTGTGTTTCTTTTTTTGGCCCCACCCTCATTT CTAATTTTGTTTGTACTATCTTTCATTTGATTTCTCAGCATCTGATGACACACAAAAGTCCCACAAATCAAGGCACAGGA CACATAGATCATTAGGATCATCTCACAAGACTACAAGCAGGTCCTTCTCTGCTGATTCCCAGTCTAAAGGATCAATTTCT ATGCCCCATGGATGGACGGTATATCATCTTCACTGTTTTTCCCCTTCAATAATTGATTTTGCCACTCCAAAAATCAATTT GGTGATATTTCAACTATTCAAATTGTGCTTAAATGTTTTCTGTAGAAGGTTGACTTGAGCAAATTGGAGATGGCTGCATT GTGGAGATATTGGCGACACTTCAATCTGGTAAACAAATTCCTGAACCTGTCTGGTTGCTTACTGTCTCCTGGGAGAGATT CTTGTGTTCGAAAGTTTCCAATTTTCTGACACCTAAAATGGGTGTGCAGGTGGATGCTGTCCCTAACCCATCGAAAGAGC AGCTAGTAGATGTTGTTCAGAGGCATTTCATGTCCCAGGTATTGAAAAAGTTCATGATTGCACTTGCATCCTTTTTTCGA ACAGCATTTCATGTTTTGAAAAATCTTTCGCTTCTGGCAATGTATGTGTTTCGAGCCTGTCTCTGATAGCATATTTGGAC TGGTGGTGGCACCCAATCCAAATTATGGTATATCTGGAAGCTTCTTTGCAGAAATGATTATGAGGCTTTTTCCACCACAA AACCATACACACTATAAGCATTGAGATGATAGGAGACAAGTATTAATTATGTTTTTCCTTTACTTTTGAAGCAAATGGAC GAGTTGCAGGTGATTATGGGATTTGTCCAAGCTGCTAAGAGGCTCAAGACTATGTGCAAATGATGGAGAGAAGCAAAGAG ATTTATAAGTTATATTGTCTGTGCTAACAAGAGATAATAGTATCTAATATGAATAGCCACTTCCCTTTGTTCTCTGTAAC ATATTTAGCGATGCTTTGTATCTTCTGAATCTAAATTAGTACTAGGTTAATTATATGAGGTTATAGTAGGGAGGCTCTTG CTATTTTATAGCCACCTAGTTATGTAGATATACGACCTTGAGACTTGATGTTCAGTGAAGTCTAAGCTTTTGATCAAAAT GTATTGCTGACCTGGGAAGTGGGTTTTCTGAGATTTCAATGTATATATCTTTTTCTTCTAATGTTGATTACTTTCATGAT GT
CDS sequence (LotjaGi5g1v0018700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGAAGCAACAATGGAAAGCTCTTCAGTCAATGGTGGTGGTGATCGATTCTCTCAGTTGCAGAGCTGTGGAGATAG CAGCGAAGAAGAGCTCTCCGTGCTCCCTCGTCACACCAAGGTGGTTGTCACCGGAAACAACCGCACCAAATCCGTACTCG TTGGTCTTCAGGGAGTTGTCAAGAAAGCCGTTGGCCTCGGTGGTTGGCATTGGCTGGTTCTTACTAATGGTATTGAAGTG AAGCTGCAGAGGAATGCCCTTAGTGTGATTGAAGCACCCACCGGGAATGAGGAAGATGATGACCTTGAATTTGAAAATAC GCAGTGGAATGGATCCGATATGGCATCTGATGACACACAAAAGTCCCACAAATCAAGGCACAGGACACATAGATCATTAG GATCATCTCACAAGACTACAAGCAGGTCCTTCTCTGCTGATTCCCAGTCTAAAGGATCAATTTCTATGCCCCATGGATGG ACGGTTGACTTGAGCAAATTGGAGATGGCTGCATTGTGGAGATATTGGCGACACTTCAATCTGGTGGATGCTGTCCCTAA CCCATCGAAAGAGCAGCTAGTAGATGTTGTTCAGAGGCATTTCATGTCCCAGCAAATGGACGAGTTGCAGGTGATTATGG GATTTGTCCAAGCTGCTAAGAGGCTCAAGACTATGTGCAAATGA
Protein sequence (LotjaGi5g1v0018700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEATMESSSVNGGGDRFSQLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEV KLQRNALSVIEAPTGNEEDDDLEFENTQWNGSDMASDDTQKSHKSRHRTHRSLGSSHKTTSRSFSADSQSKGSISMPHGW TVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAKRLKTMCK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 9 | 226 | 218 | 5.6E-114 | – | |
| PANTHER | 9 | 226 | 218 | 5.6E-114 | ||
| MobiDBLite | 107 | 154 | 48 | - | – | |
| MobiDBLite | 136 | 154 | 19 | - | – | |
| Gene3D | 141 | 227 | 87 | 1.7E-16 | ||
| Pfam | 167 | 220 | 54 | 4.3E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0018700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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