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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0024200 |
| Transcript ID | LotjaGi5g1v0024200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT1G47490.1 RNA-binding protein 47C; Swiss-Prot: sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C; TrEMBL-Plants: tr|V7CRK3|V7CRK3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0024200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4259507..4264441) extracted from Lotus japonicus Gifu genome v1.2.
GGTGATTGATCTATATAGTATATAGTTCATTGACAAATCTCAAAACAAAACAAAAATAGCCCAAAATCGAAAAAAATAGC CCAAAAAAGAAAAAAAGCAGAAAGTTAACAGAGGAAAAAAAAACTATCCAGAGATGGAAACAATCAAAGGAACGAAAACC TGGCCTGGCGGCGGATCCAGTTACAGAAACAAACACTAGTGTCCTGCAAATTGCATATCCCTCAGATCCAACGCTCAGTA TCAAATTGAATCATTTAATCCAACGGTCAAAACAACCACCGCGTTTTCGAAGAATCCTCCATCATCATCATCATCTTCTT ATATACCCTTTCTCCTTGCCGCGCCTCTTCCTTTCTTTCTCTCTCTTCCTCCTCCAGATTCAGCTTTCTCTCTCTAGAAA ACCCCAACTTCGATTCCGTTATTCGAATCTACGGTGTTCATTTATTGAACAGAGAGAGAAAAGGGTGAATTTAATTAAAG ATGCAACAATCCAACGGCTCTGATTCGTCGACGGAACCGAACAACAAGCAGCGGTCAGCGGCGGTGGCGGTGCCGCAGCA GTGGGTGCCGATGCAGTATCCGGCTATGGTAATGCCGCACCACATGTTACCGCCGCCGCCTCAACATTACCCCCCGCCGC CGCCGCCTTACGTGCCTTACCATCACCACCACCACCAGTTCGCGCCGCCACATCAGCAGCATCACCATGGATCCAACAAT AACATCGAGAACAAAACCGTTTGGGTTGGAGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTC CACCGGCGAGGTTCTTTTCTTTCTTTCTTTAATTCTATTTTTTACAGTTCAAGTGTTAAGAGGAAAATCATTTTCATAAT GTATCGTATAAGCTTATACTATCATACTTAATACGGACCACGGCGTGCCAAACCAGCCATAACTGTCTTTAAAGTTGCTG TGCAGTTTATTTGAGGGAAGAAAATGTGGATTTATTTTTTGAGAACTAAGCAAGGTTTTGTTTAGCTGTAATTGGAAAGT TGCTGTGCAGTTTATTTGGTATAAGTTACGTGGTTTTTATGATTGGTGTTTGAGTTTGTGTTTACATTGTAATAAAAATG TGCATGGGGTTGTTTACTTACCTTTAGTGTTAAATAACCACATTTTAGTTATATCAGTGTATAATTAACATAATCATGTT AAAAAAATTACATCCTTTAAATTTATGTTACAATGAGGTTGTTTAATCTTTTAGGGTTAGACAAGCTTTTGATTTGAAGT GTAAATTGGGAAGAGTGGTTATCACTATTCAACATTCATGGGATATATATTTATTATATGTATTGTTTTAAATTCAATCC AAACACATGTATAATAATTTACGGTGTGTGTTTGGTTTCGCATATGACGAGTAGCCTATTTTGGTGAAAAGAATACTCAC ATTAGCTTATTTCATACGCGATTCTCTTTCGTTATGTGATTGTGAGAAAATTTTCCAAACACGACTGACGGCTAATAGTG TCTAAACATGTATTTATCGGAGATTATTCCAATTTAGCAATGAAATGTCAAAGGAACACAATTAAATGTGAAAATAAATT CATATTGGAAATTGGAAAGAGAAATATGGTGCCAACTTTAACCTTTCACTTTAAATTGTGATAAATAAAGTTACTCTATA TCTTAAACAACCAACTATACAAACACCCACATAACCTCATTTTTCTTTTAATCTCTCTCTTCCTATCATATCACATCTAT TACTTATCTCTCTTATTTTCCTATCTTTCTCATTTTAATTTGCGTTTAACATCCAAGTGGGGAGTCTATAAAACATTAAA GTTGCAGCTGGAAATGATTTAACTTTTCAACCCTAAGTAAATGAGCTTTGTATGCATGTGTGTATCACATTGTGTTTCAA ACGTTATACATGGGGAGAAAATGTTATACTAAGAGGTATGCTTAAATTACGGCTGCGTTTCCTAATTGCGGACAGTTGCG GGTATATGCGGCCGTAATTGCGGTCGTGATGCCAATGGCATGTCTATGGGGCCTTCATTTGATCTATGTTTAAGAAAATT AATGTGAACTCTTTGGCATTATGTGTCTGTGTGTACATTTCTGAACTCTTTGGTGTGATAATATTGTTTCAGAGAAGTTC TACTTCTCTGCCACTCTTATTTATTGAAAATAAGCCTGCATTTTGGGAAATAAATTTGTTATGACAGAAGATGTTCCCTG TGCCTTCTCATATTGCTTCAGTCATGCTTCTGACCATTATATTTTTTTGCAGATTTCCTCCATCAAAGTTATTCGCAATA AGCAGACTGGTTTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACACGCCACAGCTGAGAAAGTTTTACAGAATTAT GCTGGAGTCTTGATGCCCAATACAGACCAACCTTTCCGTCTGAACTGGGCAACATTTAGCACTGGGGAGAAGACTTCAGA TAATGTTTCTGATCTTTCAATTTTCGTAGGAGATTTAGCTGCAGATGTTACGGATAGTTTGTTACATGAAACATTTGCTA GTGTATACCCTTCAGTCAAAGCCGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCGAAAGGCTATGGTTTCGTCAGG TTTGGCGATGATAATGAGAGATCCCAGGCTATGACTCAAATGAATGGTGTTTACTGTTCTAGCAGACCCATGCGTATTGG TGCTGCAACTCCAAGGAAATCATCTGGTCATCAACAAGGTATGCCAAATCACATTACTTGCTTCTGATGTGTGAAATTTT ACTTTCAAGAAAAATAAAACTACATTTTACATTCCATTCAAAGAGAAAGCATCTATCCACCATTTTTACCTCAGATTCCA TTTGTTCTTCTGCCTCACAAGCTGTTACTAATGAACTTTAAGGACTACGTTTCTTGCCTGAACAAACAAGAATCACAGTC TAATGGCTTAAATTTTGGTGTCAATTTAAAAGAGTGCTATTTTCATGTCTTTGTAGATGAATAAATTCTTTGAAATGACA ATTATTATGTCTTTTTCCCAGCCAAAAGAAAGACAATAATCATATGGTGAACTGAATGCAAATGAACATTGAATTTGTTT GCTGATTTCATTGAATAGGAGCATGCATAGTTGCAAAATCATCTGATTTATTAATTGCTTTAAATCATTCGACGCATGCA GCATGCTCACGTGACAATTTCGTATATTGTTGTGTGGCATGATTTTATTCTTGGTATCTATATCATGGAACTTCTCGAAT TGATTTATTTGTTTTTGAAGTATCTGTACTAACTCTGTTTTGATTTTCTCTGTTTCCTTGTTTAGGAGGCCAGTCAAATG GCACGTCCAGCCAACCTGAATCAGATTCCACAAATACAACTGTGAGTTTTTCAGCTTATTTCATTAAATTTTACATTTTA GGGATTTGTCATTTAATACAATTGTGAGTCATTATAGATATTTGTTGGAGGACTCGACCCTAATGTTACAGAAGAAGATC TTAGGCAGCCATTCTCCCAGTACGGTGAGATAGTCTCTGTTAAGATACCTGTGGGGAAAGGGTGTGGTTTTGTCCAGTTT GCAAACAGGTTAAGTCCTTGCCTTCTCAAGTTTTTTCATAGTAACAGATAAAATGCTTTTGAAAGATAACATGTTCTTGA ATCTCTTCATTGATGTAATCACTACAATATCATTTGAACAACTTTTCCAGAAATAATGCTGAAGAGGCGTTGCAGAAGCT AAATGGGACAACAATTGGAAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGGCAAACTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTTTTGCAATCCCACATTCTCATTATTATTGCATTAGGTCTCATGATG TTGTAATGAAACAACTATCCCAAAAAGGGTAAAGACACATAAACATTTTTATTTTACACTTCTGGCATGTCCCCTCACAC AAGCGCCCATTGGACTTGAGGCAATGACAATGAACATGTCCACCTAACTTGTGCTGAAATTCAATTATAATGCGTGCAAA AAGAATGCAACTCTAGATCGCTCTGTTATAGAGACTCCGATATCATGTTATGAACCAACCATGCCAGAAAGTCAAGCTGT TAGGTGAAGACACATGAAACAACTTTGTTTTTGAACAATATTTTAGGTCCCTAACTGCTCACATAAACTAAGTCTGAGTT CACTGCAATCTTTGTAAAGGAAAATTGAAGCAACGTTTTTCTGAATTTTCTTTTAAATCAATAGAAAAAGTAGTTTTTTT CATCTGATCTCTCAAAAATGCTTTGTAAGTGCAGTCTTTCGTGTAATTGCATTGTGTAATTCTCTTTCGATCGATATACC TTTTGATAGCAGTTCTTTGTTCTTTTTGGTTGACTCTTTCGATAGCAGATTAGAATGGATTTCGGCAGTCCCTGGGGAGG GGCATATTATGGGGCACCAGTTTATGATGGCTATGGATATGCTTTGCCGCCACCTCATGATCCAAGAATATATGCTGCTG CTTATGGAGCGTACCCCATTTACGGAGGCCACCAACAGCAAGTAAGCTGATTGAAGTGCACGTCAGGAGTAGTTCTCACA ACAGGTCACAACAGCATCACGCTTGAATGAGAAAATTAACTTCTCTTCCATGTAACTTGCTTGATCTGTTGATTTCTTAA GAATCCCTCCTAATTGTGGAGTGGAGTTGAATTTTGATAAGCTGAGCTAGCACGGTAGGGTTTCAATTAATAATTTGTTT AGACTTGTAGGAGTGATGATGACTAATGAGGAATTTGAACTTAATTATCAGAATAATTATGTGTGATTGTGTGCTTGCTT GCATGTCATTTGTTTCCAGCTGTTGACATTGTTTGCCTTTTTTTTCCAAAGCTTT
CDS sequence (LotjaGi5g1v0024200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACAATCCAACGGCTCTGATTCGTCGACGGAACCGAACAACAAGCAGCGGTCAGCGGCGGTGGCGGTGCCGCAGCA GTGGGTGCCGATGCAGTATCCGGCTATGGTAATGCCGCACCACATGTTACCGCCGCCGCCTCAACATTACCCCCCGCCGC CGCCGCCTTACGTGCCTTACCATCACCACCACCACCAGTTCGCGCCGCCACATCAGCAGCATCACCATGGATCCAACAAT AACATCGAGAACAAAACCGTTTGGGTTGGAGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTC CACCGGCGAGATTTCCTCCATCAAAGTTATTCGCAATAAGCAGACTGGTTTATCAGAGGGTTATGGATTTGTGGAGTTCT ATTCACACGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAGTCTTGATGCCCAATACAGACCAACCTTTCCGTCTG AACTGGGCAACATTTAGCACTGGGGAGAAGACTTCAGATAATGTTTCTGATCTTTCAATTTTCGTAGGAGATTTAGCTGC AGATGTTACGGATAGTTTGTTACATGAAACATTTGCTAGTGTATACCCTTCAGTCAAAGCCGCAAAAGTTGTTTTTGATG CCAATACTGGCCGTTCGAAAGGCTATGGTTTCGTCAGGTTTGGCGATGATAATGAGAGATCCCAGGCTATGACTCAAATG AATGGTGTTTACTGTTCTAGCAGACCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGTCATCAACAAGGAGG CCAGTCAAATGGCACGTCCAGCCAACCTGAATCAGATTCCACAAATACAACTATATTTGTTGGAGGACTCGACCCTAATG TTACAGAAGAAGATCTTAGGCAGCCATTCTCCCAGTACGGTGAGATAGTCTCTGTTAAGATACCTGTGGGGAAAGGGTGT GGTTTTGTCCAGTTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACAACAATTGGAAAGCAAAC AGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGATTAGAATGGATTTCGGCAGTCCCTGGGGAGGGGCATATT ATGGGGCACCAGTTTATGATGGCTATGGATATGCTTTGCCGCCACCTCATGATCCAAGAATATATGCTGCTGCTTATGGA GCGTACCCCATTTACGGAGGCCACCAACAGCAAGTAAGCTGA
Protein sequence (LotjaGi5g1v0024200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQSNGSDSSTEPNNKQRSAAVAVPQQWVPMQYPAMVMPHHMLPPPPQHYPPPPPPYVPYHHHHHQFAPPHQQHHHGSNN NIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRL NWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM NGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGC GFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGYALPPPHDPRIYAAAYG AYPIYGGHQQQVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 17 | 411 | 395 | 2.9E-222 | – | |
| PANTHER | 17 | 411 | 395 | 2.9E-222 | – | |
| SUPERFAMILY | 50 | 166 | 117 | 1.24E-22 | ||
| MobiDBLite | 58 | 77 | 20 | - | – | |
| Gene3D | 84 | 164 | 81 | 3.0E-23 | ||
| ProSiteProfiles | 85 | 165 | 81 | 14.658 | ||
| CDD | 86 | 166 | 81 | 3.58235E-46 | – | |
| SMART | 86 | 161 | 76 | 8.6E-14 | ||
| Pfam | 87 | 150 | 64 | 1.5E-12 | ||
| SUPERFAMILY | 173 | 272 | 100 | 1.36E-21 | ||
| Gene3D | 177 | 253 | 77 | 3.3E-20 | ||
| CDD | 177 | 256 | 80 | 5.28777E-47 | – | |
| ProSiteProfiles | 178 | 257 | 80 | 16.364 | ||
| SMART | 179 | 253 | 75 | 6.8E-17 | ||
| Pfam | 180 | 249 | 70 | 2.8E-14 | ||
| MobiDBLite | 253 | 290 | 38 | - | – | |
| MobiDBLite | 258 | 289 | 32 | - | – | |
| Gene3D | 259 | 364 | 106 | 9.4E-28 | ||
| SUPERFAMILY | 272 | 383 | 112 | 6.45E-32 | ||
| CDD | 282 | 353 | 72 | 1.05006E-40 | – | |
| ProSiteProfiles | 283 | 355 | 73 | 19.229 | ||
| SMART | 284 | 351 | 68 | 3.5E-23 | ||
| Pfam | 285 | 349 | 65 | 7.5E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0024200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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