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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0025700 |
| Transcript ID | LotjaGi5g1v0025700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Patatin; TAIR: AT2G26560.1 phospholipase A 2A; Swiss-Prot: sp|O48723|PLP2_ARATH Patatin-like protein 2; TrEMBL-Plants: tr|G7I4H1|G7I4H1_MEDTR Patatin; Found in the gene: LotjaGi5g1v0025700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4387822..4390417) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGAAAACAAATTCATCCCTTGAACAAATTCAGCCCCCTACTTATGGGAACTTAGTAACCATTCTTAGCATCGATGG TGGTGGTATTCGAGGCATAATCCCTGCGACAATTCTTGAGTTCCTTGAATCTCAGCTTCAGGTATGAAATGAATCTATAG GCACTGGCTACAAAAAAAAAGGCATAGTAATATATCAAGCAAATCAAGTGGTGCATTCTTGATTCGTCTTAAACAAACTC TCCGCTGAAAGAGTGAGTCTCATCGAAATGTAATTAGTTTCGACTTGAATAAGATTGTACGGTAAATAATGATGCTTGTG TTAGAAGAAAAAAAATTGTTTTGATTGTGATTGCTCGCCTCACTTGAACTTTATGCATATTCATCCAATCATATTTATTA AATTCATAGAACTTTTACAAAATAATTTTAGTATCCATAATTTAACTGATCTCAATGTGGGTCATGCAGGAGTTGGATGG TGAGGATGCAAGGCTTGCAGACTACTTTGATGTGATATCAGGAACAAGTACAGGGGGTCTTGTAACCGCTATGTTAAGTG CTCCAGATAAAAATAATCGTCCACTTTTTGCTGCCAAAGATATCAAGCCCTTTTACATGGATCACTGCCCAAGTATATTT CCACAACACAGGTAAGAATTTATACATCTTTTTTATTTCTGTTTAAACATATATATTCTTAATAGGGAAAAAAACAAGAG TAAGTCCGGCCCTCTCAAAATGTGGATATTCTCAGCTTGAACATAATTAACTTTTGTGAAGATATTTGTATTTGACAAAC AAAGTAAAAAACATTTACACTTGTAATTTGAGTTTTAAATAATAATTGAGGAATTAAAGTTTTTGAGGTTCAATTTCTTG TAGAGGCTTCTGTGGGACTATGTTAGCAAAGGTGATAAGAACTCTTGGAGGACCCAAATATGATGGAAAATACCTCCATT GGGTTGTGGGAGAGACACTTGGAGACATTCGCTTGCATGAGACTCTCACCAATGTTGTCATTCCCACTTTTGACATCAAG TGTTTGCAGCCAATTATTTTCTCATCTTATAAGGTTTCCTTCTCTCCCTAATTATATTCACTTTAAAAATATTTTTAAAG TGAAAATATTCACTTTAAAAATATTCACACTTTTAATCTCATTTTCAAACACTTATTTTTTCCAATCAATGGCCAATTAA ACATAGTCTAATTAAAAGATTTGAAATTTACATGTAGCTTAAGATGAACCCTTGCATGGATGCAAAACTCTCAGACATAT GCATCAGCACTTCTGCTGCACCTACTTATCTCCCTGCTCACAACTTCAAGAACCAAGATTCTAAAGGGAACGTGCACGAA TTCAACCTCATTGATGGTGGTGTTTGTGCAAATAACCCGGTATGTATAAATTATTCACAAATAACTAATGTAATCACGGT TAGAATTTTTATTGAATTACTAATTAATTGTGGAAGTTCCACTATTTTTTTAGTCTATCTCATGTGGGAATTTCATGATG CAGACTTTAGTTGCCATGAACGAAGTAACAAGGCAAATCATTGATGATAATCCGGATTTCTTTCCAATGAAGCCTCTTGA ATATGGTCGCTTCCTAATAATTTCATTAGGTACAGGGACAGCAAAAAATGAGGAAAAATTTGATGCAAAAATGGCAGCTA AATGGGGGCTATTAGATTGGCTAACCCATGGTGGTTGTACTCCTTTGATCGATGTTTTTACTCAATCGAGTGGAGATATG GTGGATTTCCATTTATCTACTATCACTCAAGCTCTTCATTCAGAAGATAATTATCTTCGAATACAGGTAAATGTTAAAAT ATAATATAAAAAATATTCATGTCAAGTGTGATAGAATGAATAAAATATTTAGTTTAATTTCTTTTTTCAATATTAATTAT GAAATTTAGAAGCTACTTATTGAAGTTTTCCGTTATAATTGATGCTGGTCATTACTTATAGAAATGATCAATTTGCTTCA TAATATGCAGGATGACACATTGATGGGAACTGATTCTTCAGTGGACATTGCTACAAAAGAGAACTTGGGAAGATTGTGTC AAATTGGTGAAAAGCTATTAAAGAAACCTGTCTCTAGGGTCAATTTGGAAAATGGTCATTTTGAGCCGCTGAAAAATGGA GAAACCAATGAAGATGCTCTCAAAAGGTAAAAGACTCTACAAACATATCTATATACATATATATAGTAGTTCATTTAATC ATGATTCGCATTCTGAATCAACAAGACATGATTACAATTATGTTAATGACACATTTGATTTTAATGTGTTCAGGTTGGCA AAAATACTTTCACAAGAGAGAAGACTCCGCGAAATGAGATCTCCACACACAAATAAAATGGCCTTTTAATCTCATTCCTT CATGTTATTTGACTTAGGCATTATTTGATTCAATTCATTTATATAATGTAATAATATCAGTAATGAAGAATTTGACTAGA TGGGATTTTAGATATATAGGAGTTAGAATTTAAATTGCTTATTAAAATAATGTAACTTGTAGTCTTGTTTGATTCAGCTT AAATCGGTTGACAATAATAAATTCACAATCTTGATT
CDS sequence (LotjaGi5g1v0025700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAAACAAATTCATCCCTTGAACAAATTCAGCCCCCTACTTATGGGAACTTAGTAACCATTCTTAGCATCGATGG TGGTGGTATTCGAGGCATAATCCCTGCGACAATTCTTGAGTTCCTTGAATCTCAGCTTCAGGAGTTGGATGGTGAGGATG CAAGGCTTGCAGACTACTTTGATGTGATATCAGGAACAAGTACAGGGGGTCTTGTAACCGCTATGTTAAGTGCTCCAGAT AAAAATAATCGTCCACTTTTTGCTGCCAAAGATATCAAGCCCTTTTACATGGATCACTGCCCAAGTATATTTCCACAACA CAGAGGCTTCTGTGGGACTATGTTAGCAAAGGTGATAAGAACTCTTGGAGGACCCAAATATGATGGAAAATACCTCCATT GGGTTGTGGGAGAGACACTTGGAGACATTCGCTTGCATGAGACTCTCACCAATGTTGTCATTCCCACTTTTGACATCAAG TGTTTGCAGCCAATTATTTTCTCATCTTATAAGCTTAAGATGAACCCTTGCATGGATGCAAAACTCTCAGACATATGCAT CAGCACTTCTGCTGCACCTACTTATCTCCCTGCTCACAACTTCAAGAACCAAGATTCTAAAGGGAACGTGCACGAATTCA ACCTCATTGATGGTGGTGTTTGTGCAAATAACCCGACTTTAGTTGCCATGAACGAAGTAACAAGGCAAATCATTGATGAT AATCCGGATTTCTTTCCAATGAAGCCTCTTGAATATGGTCGCTTCCTAATAATTTCATTAGGTACAGGGACAGCAAAAAA TGAGGAAAAATTTGATGCAAAAATGGCAGCTAAATGGGGGCTATTAGATTGGCTAACCCATGGTGGTTGTACTCCTTTGA TCGATGTTTTTACTCAATCGAGTGGAGATATGGTGGATTTCCATTTATCTACTATCACTCAAGCTCTTCATTCAGAAGAT AATTATCTTCGAATACAGGATGACACATTGATGGGAACTGATTCTTCAGTGGACATTGCTACAAAAGAGAACTTGGGAAG ATTGTGTCAAATTGGTGAAAAGCTATTAAAGAAACCTGTCTCTAGGGTCAATTTGGAAAATGGTCATTTTGAGCCGCTGA AAAATGGAGAAACCAATGAAGATGCTCTCAAAAGGTTGGCAAAAATACTTTCACAAGAGAGAAGACTCCGCGAAATGAGA TCTCCACACACAAATAAAATGGCCTTTTAA
Protein sequence (LotjaGi5g1v0025700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKTNSSLEQIQPPTYGNLVTILSIDGGGIRGIIPATILEFLESQLQELDGEDARLADYFDVISGTSTGGLVTAMLSAPD KNNRPLFAAKDIKPFYMDHCPSIFPQHRGFCGTMLAKVIRTLGGPKYDGKYLHWVVGETLGDIRLHETLTNVVIPTFDIK CLQPIIFSSYKLKMNPCMDAKLSDICISTSAAPTYLPAHNFKNQDSKGNVHEFNLIDGGVCANNPTLVAMNEVTRQIIDD NPDFFPMKPLEYGRFLIISLGTGTAKNEEKFDAKMAAKWGLLDWLTHGGCTPLIDVFTQSSGDMVDFHLSTITQALHSED NYLRIQDDTLMGTDSSVDIATKENLGRLCQIGEKLLKKPVSRVNLENGHFEPLKNGETNEDALKRLAKILSQERRLREMR SPHTNKMAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 404 | 404 | 1.5E-242 | – | |
| PANTHER | 1 | 404 | 404 | 1.5E-242 | – | |
| Gene3D | 8 | 403 | 396 | 1.7E-153 | – | |
| CDD | 17 | 368 | 352 | 0.0 | – | |
| SUPERFAMILY | 18 | 367 | 350 | 1.02E-71 | ||
| ProSiteProfiles | 23 | 230 | 208 | 38.657 | ||
| Pfam | 23 | 230 | 208 | 6.6E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. |
Expression pattern of LotjaGi5g1v0025700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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