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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0027900 |
| Transcript ID | LotjaGi5g1v0027900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | cold regulated protein 27; TAIR: AT5G42900.3 cold regulated protein 27; Swiss-Prot: sp|P44806|KDTA_HAEIN 3-deoxy-D-manno-octulosonic acid transferase; TrEMBL-Plants: tr|K7M5L5|K7M5L5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0027900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4641332..4644958) extracted from Lotus japonicus Gifu genome v1.2.
GCATTGAATGTTTCATTCATATATAGAATGAAGAATGCGATATATGTGTGGAGGGGAAGGAAGAAAGAAAAGATCATAGA GGATAACAGATATTTATTTTCAGCGCATCCAAAATATCTAGCTTGGGATGGTCCCACGACACGTGTAAAAGCGCAGACAA CTGTATTCTCTTTTTTTTTCCTTCCCAAACAAACACCGCCCTTCAATTCTCTCTCCTTTTTATTCACAACAATGAACAAC AACCACCCCACCACCAACAACAATAACAATTTCAGAGACACAGAAGAAGAAGAAGATGAAGAACCACTAACTCGGACGAG TTCACTCACCTCCCTCACCGAGTCCACGTACCTTCTTCATATTCTACAACCGATCCATTCATGGATAAGCAGATGCAGGT TCCTAGCTACTTACTTTCATTCTTTTCCCTAAACGCTTCTTATAAATATATCTGTTTGTTAATTTCGATTCCTATGTCAT ATGCTTCTTGTGATTGTGTTTGTGATTGTCAATTCCTTTATTTTTTCACATCATCATATTATACATAAACTTCTGCAATT TTCTCTAGATTAGGAAGAACTGAACTGTACTTATTACTTAATATTGTCAAGGAGATACAAGTTCATAATAAAATATTCTT ACTTTTGTTGTGATGGATATTTTAAAGTTTATTTTAGTGCTGGATCCCTGTGATAAATTATAGATGCAGAAACAATATTG TTATTGATCACCATATATATACATGTTGGATTTAATTTGTATGCACCTAGAAAAAAAAATTAAAACATGCATCCAATCAC ATCTTTCCATTTTTTTATTTTAAATATTTTTTTTTATTTAAGTTTTAACTAAAACATGATAAATTAATGAATTCTAATTG GATCGTTCAGTACATAATAATTGAACTCTATTTTTTACCCTTAAACAACTCTTCTTTTAACGTTTATTATTTGAAGTTTT TTTGAAAGATATTATTTGAAGTTTAAAATTTAGTATTATCACGGAAAGGAATAAAATAAAATTGAGATATGAAAAGTAGC TAAGGCTTCTGTTGTGAATTTATTTTCAACTTACTATGTTTTCTTTTATAAAATTATGAGAAATGTTAATATCATATTTT GTAAATTGAACATTTTATCAACAATTTTTTTTAAATAAACAATTTTTTTTATTATTGACAAAATTTATATGGATTTTATT TAGTACAATGTGTGCCCAGCTTCTTGTTTTATATGGATTTATCAACAATTTGTGGGACTTGTATGGATTCTATCTAACAA GATAACATTATATTTCTCTAAAATTATGTCATTTATTTCGTTAAATTAGCTAATTTGACTTGGCATTTTAAGGAAAAATC AGCCTGATGATACTATCTGCTAATCTGATTTTGTGGTTTGATATATGCATATTATCAGGGAATTATGCAAACGGAAGAAT GGACAGATGAGAAACACAGCATGTATATCAAGTCCATAGAAGCATCTTTTGTTAGTCAGTTATATGAATCCAAGCAACCT GCTACCACTTATGGCCAGGTTTCCTTTCCTTTTCAAATGCCCAAATTTCCACTTCTGTTTGTTAAAAAGAAATGCAAAAC AGTTTCTTTCCGGGTCCAGTTCATATTATGCACTTAGAGTCGGTTAACATATCTCGAGATACTTTTTTGTTTACTACTTC AACAAAAAGTGTATTAGGATGTGTTATTTTTCCATTTTCATATTTTCTAACCGGTATCCAAATGGACTCTTGCTTCACTG AAATATGATTATGCCTTCCTCATAATCACAAATGAAGCTTAAAACTTACCCTTTGTTTTAGGTAGAACATGAAAATTCAT GTATAGTGAATTAGGAGTAGCATGTGTAAGTAGTACTAGAAGAAGTAATAATAGAAATAATGATGATGATGATGATGATG ATTTGTTTAAATAATCTAGTAATGAAATAAAGTGTAAGTAGTGTTAAACTGTATATATACTTTCCCTCTTCCCTCACACC TGAAGAGAACTAAGCTTATATTATTTTTCCTGCATAATTACAGTTTAAGGTCCATCGCGGTGGCTTTTGGCAAAAGATAA GTTTTGAGAGGGAGAATCCGCAAATGAGTAGTACTAGTAGGATTAACCAGTGCGCTGATTTAACAGCAAATCCATGGATT CAACACTACCGATCTTCACGTGTAGCAGCTCCATCCCTTACAAGTGAAGTTGTTAAATTTGGCCAAAAGAAGGGAATTTC CTCTAAATCTGGGCAATTTCATTTGTCTGAATCATATGTATCTGATCAAGATATGATATGTGATGATACAGGTGGGTCAA AATCTTCTTCTAGACAATTTCCGGTGTTTTGAATTTCATGATTTAGAATCAGATTTATTACATGTGCTTTCCTGCAAGCA TGCATAGACTGTCATGTTAAGATGTTGTCTCTCAGCTTCATACTTATTACATATGTGAGACTTTATGAATATTTATGAAA AAAGAGATAGACAGAAAGTTTCACATGACACTTTCATGTGACATGAGAGGATCTTAATTTGATGTTCCTATCAATTTTCC TTCAACTATACCCTTACCAATGTAAGTAAGGATTTTGGATTTAAGTTAACCAGTGACCAACTGCTCTTTGTTCCTGAGAC AGAACAATTTCTGATGCCATCTATGACACTAAAGGGGTGTTCATATTTGAAACAAGTTTCCAATGTTTTCTCTCTCAAAT CAATATACTTCAATAAGTACAATTTAGTCAAGTAGTAAACTAGTTAATGATTTTTTTATGTCTTTCATAATCATAGTGCA AACGTAGGAACAGAGGAAATATTTTAATCTAATTATCCGGTTCTTGTAGAGATGTCAGATCAGAACTTCATTGATGAAGA AGAGGAAGGTGAAAATGAAAACAGCATAGGCAACGTGAAACGACATACATCTATGGCAACTGATGCAAAAGCCAATGATC AGGTAACAATTTTTTTAATGTTATGATTTTGATTGCTAGGGATCTCAGAATTTCTTGATCGTGGTTGGAACTAAGTGATT GCCATTTCAAAATGCTGTTTCAGATGGTCCCTATCAGAAAATCTTCTTCCATTGGAGATGTTACGAAGAAATGTGTTTCT GCTGTTTAGAGTAAGAGGGGTTTTCATATAAGGGATGTACCTTTTGGCTGATAGATTTGACTTGTAACTAGGAATTTAAG AGAAAAGGCTTTTATGTATATCCACGCTTTGGATCATTTTCTAGAGTGGTTGGCGTCAGGCATGGAGAAAAAAACATAGG GGTAGTTGTTTTTAGCTCATGTTGAGGATGTGTGTATATACAAAGAGCTTTTGTGAATTTTATGATTTATGATTGAAACT AATTTGAGTCATCTTCTGGTTTCTGTGACTTCTCTTTCCTAGTGCTACTAGTTTGATGTTATCTGAAAATGTATACTTAA ATCAATGGATACACCTTTGACACCAATGCAAAATAAACATTAGCACTCATTCAAGACATAATGTGAACGAAGACTTTTCT TATAAATTGAGATAAAAGTTTGTTTGTGTTGCACTCAACTGATATCCAAACACACACGAAATGATGAATTCTAGTTTTGA TTTTAAACATGTCATCAACTGTTGAGC
CDS sequence (LotjaGi5g1v0027900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAAGCAGATGCAGGGAATTATGCAAACGGAAGAATGGACAGATGAGAAACACAGCATGTATATCAAGTCCATAGA AGCATCTTTTGTTAGTCAGTTATATGAATCCAAGCAACCTGCTACCACTTATGGCCAGTTTAAGGTCCATCGCGGTGGCT TTTGGCAAAAGATAAGTTTTGAGAGGGAGAATCCGCAAATGAGTAGTACTAGTAGGATTAACCAGTGCGCTGATTTAACA GCAAATCCATGGATTCAACACTACCGATCTTCACGTGTAGCAGCTCCATCCCTTACAAGTGAAGTTGTTAAATTTGGCCA AAAGAAGGGAATTTCCTCTAAATCTGGGCAATTTCATTTGTCTGAATCATATGTATCTGATCAAGATATGATATGTGATG ATACAGAGATGTCAGATCAGAACTTCATTGATGAAGAAGAGGAAGGTGAAAATGAAAACAGCATAGGCAACGTGAAACGA CATACATCTATGGCAACTGATGCAAAAGCCAATGATCAGATGGTCCCTATCAGAAAATCTTCTTCCATTGGAGATGTTAC GAAGAAATGTGTTTCTGCTGTTTAG
Protein sequence (LotjaGi5g1v0027900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKQMQGIMQTEEWTDEKHSMYIKSIEASFVSQLYESKQPATTYGQFKVHRGGFWQKISFERENPQMSSTSRINQCADLT ANPWIQHYRSSRVAAPSLTSEVVKFGQKKGISSKSGQFHLSESYVSDQDMICDDTEMSDQNFIDEEEEGENENSIGNVKR HTSMATDAKANDQMVPIRKSSSIGDVTKKCVSAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 182 | 172 | 4.4E-43 | – | |
| PANTHER | 11 | 182 | 172 | 4.4E-43 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0027900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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