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LotjaGi5g1v0028400.3

Overview

Field Value
Gene ID LotjaGi5g1v0028400
Transcript ID LotjaGi5g1v0028400.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Alpha-amylase; TAIR: AT4G25000.1 alpha-amylase-like protein; Swiss-Prot: sp|P17859|AMYA_VIGMU Alpha-amylase; TrEMBL-Plants: tr|A0A151S7Y0|A0A151S7Y0_CAJCA Alpha-amylase; Found in the gene: LotjaGi5g1v0028400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:4704704..4706253) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTTGTTGGGTATGCTCCAAGGTTCACCAAAATCTACATGGAGAAAACCTCACCTGATTTTGCAGTTGGGGAGCTTTA TCAGAATGTAACAAGAGGACAAGATGGAAGACCCTTAGCCAATCAGGACAAGCACCGTTCCACCTTGGTGAAGTGGGTGG ATGATGCAGGTGGTGCTGTCACTGCTTTTGACTTCACAACCAAAATGGTTCTGGGTGCTGCTGTCCAAGGTGAACTCTGG AGGATGAAGGATGCTAATGGCAAGCCACCAGGTATGATTGGAACAAAGCCATCTAATGCTGTTACCTTTGTGGACAACCA TGATACCTGGTCTCAGAGAACTTGGCCTTTCCCAGATGATAAAGTCATGTTGGGTTATGTTTACATTCTCACTCATCCTG GTCACCCTACAATTGTAAGTACATGCATGTTTGCTTTTGTTGCTTCCAATCACTCGAAATCAGTTCTTCTTAGAAGCTAT AAAGTGCATGTTTGAAAATCCTTTTATAATTAATTTTGAGGTTAAAATCAATATTAGGTTAGTAGCCACTAAGTTTAAAA ATTTTAACTTAGAAAAGAGAAGTTGATTCAAACATGATAAAATAGTCGTTTCTCCTGCATAACTAGAACCCAAAATCAAT CTTTCTTCTTAGAAGTTACAAATAGCTGGTTGGAGTCAAATTATATCTCCTCATAATCAATTCTAAAACCAAAATTGATT CTAGCTCTATAATCAATCATTCAATTGTAAAAGAATTTCTAAACATACACAAAGAGCAATATGGATCTTCAGCAGTTATA TTCTTGACAACTCTCTGTTGCAAAATCTTAGCACGTAATTTTTATATTAAATGGTTCAGAATTCAGATTGATTTGTAAAA CGTTAAATTGATCAAAACTTTTATGCACTTAATATTTTAGTGCTGCTGACTGCAGAAAGACCGCAGATGCAGCAGAGAAT CCAAATTTGCACAGAGAGTAGTTTTTTCTACGTAACTAAAACGTGAAATCCATTCTGCAAAATTGGAACATGAGTTTCCA AACACGATGTAAATAAGTGCATGCAACGCACTCAAAATCATTGTCGTTTATACATATGCTACAAGCTATTTAGTATTTAC TTTGGAAACCAATCATAGCTTCTTTAAACATGTCATAGATTCTTTGCCAATTCGTGAAACCAAACATACCCTACAGTACA CACATAGATTCTTATTTGACTTTATTCTTATACTTTCTTTATTATTTTTGTTGAGAAGATTATTTACAGTTGACATTATA TGTTGTTTATTCATCCAGTTCTACGATCACTATATCGAATGGGGGCTAATGGAACCAATAAAGAAATTAACAGAAATAAG GAAAAGGAATGGAATTAAGCCTACAAGCACAGTGAATATTCTGGCTGCTGAAGCTGATCTCTACATGGCTGAGATAGACA ACAAGATCATTACGAAAATTGGACCTAAACAAGATCTTGGGAATCTTCTTCCACCAAACGTTCAGGTTGCTACCAGTGGA CAAGACTATGCTGTGTGGGAAAGAAAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0028400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGTTGGGTATGCTCCAAGGTTCACCAAAATCTACATGGAGAAAACCTCACCTGATTTTGCAGTTGGGGAGCTTTA TCAGAATGTAACAAGAGGACAAGATGGAAGACCCTTAGCCAATCAGGACAAGCACCGTTCCACCTTGGTGAAGTGGGTGG ATGATGCAGGTGGTGCTGTCACTGCTTTTGACTTCACAACCAAAATGGTTCTGGGTGCTGCTGTCCAAGGTGAACTCTGG AGGATGAAGGATGCTAATGGCAAGCCACCAGGTATGATTGGAACAAAGCCATCTAATGCTGTTACCTTTGTGGACAACCA TGATACCTGGTCTCAGAGAACTTGGCCTTTCCCAGATGATAAAGTCATGTTGGGTTATGTTTACATTCTCACTCATCCTG GTCACCCTACAATTTTCTACGATCACTATATCGAATGGGGGCTAATGGAACCAATAAAGAAATTAACAGAAATAAGGAAA AGGAATGGAATTAAGCCTACAAGCACAGTGAATATTCTGGCTGCTGAAGCTGATCTCTACATGGCTGAGATAGACAACAA GATCATTACGAAAATTGGACCTAAACAAGATCTTGGGAATCTTCTTCCACCAAACGTTCAGGTTGCTACCAGTGGACAAG ACTATGCTGTGTGGGAAAGAAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0028400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVVGYAPRFTKIYMEKTSPDFAVGELYQNVTRGQDGRPLANQDKHRSTLVKWVDDAGGAVTAFDFTTKMVLGAAVQGELW RMKDANGKPPGMIGTKPSNAVTFVDNHDTWSQRTWPFPDDKVMLGYVYILTHPGHPTIFYDHYIEWGLMEPIKKLTEIRK RNGIKPTSTVNILAAEADLYMAEIDNKIITKIGPKQDLGNLLPPNVQVATSGQDYAVWERK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.20.20.80
1 163 163 3.2E-55 –
PANTHER
PTHR43447:SF20
2 219 218 3.1E-106 –
PANTHER
PTHR43447
2 219 218 3.1E-106 –
SUPERFAMILY
SSF51445
3 152 150 1.46E-20
IPR017853
SMART
SM00810
160 220 61 1.6E-33
IPR012850
Pfam
PF07821
161 219 59 2.0E-19
IPR012850
SUPERFAMILY
SSF51011
164 220 57 2.63E-18 –
Gene3D
G3DSA:2.60.40.1180
164 221 58 2.8E-27
IPR013780

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004556
Molecular function Alpha-amylase activity Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units.
Subterm of
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0028400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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