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LotjaGi5g1v0033300.2

Overview

Field Value
Gene ID LotjaGi5g1v0033300
Transcript ID LotjaGi5g1v0033300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Interferon-related developmental regulator 1; TAIR: AT1G27760.1 interferon-related developmental regulator family protein / IFRD protein family; Swiss-Prot: sp|Q5S1U6|IFRD1_PIG Interferon-related developmental regulator 1; TrEMBL-Plants: tr|A0A1J7IMR5|A0A1J7IMR5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0033300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:5467497..5471973) extracted from Lotus japonicus Gifu genome v1.2.

GTCGGTGTCTGGGACTCAAGAAGTGCACTTTGATCAAGATTATCTGCTTGACCAAGCTCTTGATGCTTTAGATGAGAAAA GGCACCTCACTTTCCACTTTCCAATCATAAGGGTTTAGCATTAGCTAGCTGGTTTTTTTTGGTTATGGACTTATGGTGTT GCTTCTTGTGGCTTGTTCTATATATTGAAATTCCTCTTCATTTTGAGCCTAAACTTTTGTTTTCTTTTTTTTCTTGTGGT GTGATACAGGGGTTCTACGAGGGAGAAAGCTTTTTCATTGATCATTGGGGCTTTCAAGAGCAATATGCAGCATCAATTTG TTGACAAAAAGTAAGCATTTAATCTTTAGCTTTTCTCAGCTCACTGTTAAGGGATCGTTTGCTTATGATTTATCGCGTCA TTTACCTTATATATGCTACTACTTACAGAAGTAACATATAGATACATTCAGTGGGTAACTCTGAGTTGAACTATAACTTG GCCTCTTAGAAAGGATTTAATCTTCTTACCTGTATGTTTAGCTCAATCTAAAGCTCTGGAATTAATTTAGAAGTATTGAT TGATTGGGTAGAGTGTGGAGCTATTGGCGCTTCTATGTCCTATTCACATTGTGCTCTAACTTCTTTGAAATTTAATTGCA TATTCTGAATTTCATTCAGTTATTTATTTTCATTCAAGTGTGGGTTTAAGCATAAGGAATAGCAATTTAGTTGAGGGAAA TTTAGGAAACAGCAACTAACAGCATTTAGTAGGTAATATGAATATGAATTGGCATTGGTAGCTCCTGTGGGCCTACCTTG TTTATTTCTTGTGAAAAATGACATTGAATGAAAAATTGCTAAAGCATTCAGTACATGATGAGAGGCCACAGTTCAGCAGA AACTCTTTCCTTATGTAAATCATTAAACCAAAAATAACATCCTTTATTTAACTATAGTTTCCAAAATATTTTTTCCAACT TTTCATAATATGTGCTTAATTTTTCATTTTTAGATTATGATTACTGAAAACATCAAGTTATCAATCAATCACATCATGTA TGATATGTCTTTCTTACTATCATGCCTGTTTTAATGTTGCTTCCTAACACTTTTACTATAAGACATGTCAATGGTTGGAT CTAGAGTGTAGATGTCATACGTACATATATCACTTATCTATTTATTGATCTTTTTAACACAATGGTTTCTGGATACAGTA TTGATGTCAAGCTGTATTCATGTTAAATATAGAGATGTTTTGTCTCACTCATGTATATATTATTCATTTAAATATGATGG TCGTCATCACCTTGAATTTTGTTCCTTTGTCAGATTTGCCACCTTATTACATCAGTGTCTTGCTTCAATAAAAAGAGGTT CCAAACAGGCATCTGCAAAGGAGGTAGCTTTGGCATCTCATGTCATCGGTAATATTTGGATTTACTAACTTATGTTTGAT ATTGCCTAGAGATAAGTAATATTTAATTCGATTCTTTTGTAGGTTTGTTGGCCCTCACTGTTGAATGTGGTGATAATGCA CGTGAAATATTTGAGGAATCAATTCGTCCTCTAGATGAATTTCTCACATCTAAATCAGATTCGATAAAGGTTCCATCAGT AAGTAGGAATTTGGATATTTTGTAAAAAACTTGTATTCAAAATCTAGCTTATTTGCTAGAGGCTCTAGTTCTGAATCCTC CCTGCTCAATGCTGCTTATGCTTACAGTTGCTGGAGTGCTTGGCTATAATCACTTTTGTTGGTGGGAACAATCAAGAAGA AACAGAGAGATCGATGGACATAATGTGGCGAGTTATTCATCCCAAATTAGGTTCCAATGTAGGCATCCGTCTTAAATTTA CCATTAAATTGTGCTTCCTTTCAATGATTATTACCTTAAATATGAAGACAGAGACATTTCTTTATTTTGACATTGGTGGG CTTAATTTTTCATGTTAAATTTACTGCTTCAGTTGTTTCATTGTTTAGGTAGTTACAGTCAAACCTTCAGCTCCATTAAT AACGACTGTGGTATCTGCTTGGTCCTTTCTCCTCTCTACCATGAGCGAGTTGAAGTTAAATTCTAAAAATTGGCAAAAGT AAGCAATCCTTTTTTGTATTCTGTCATGAACCAACTATCCCAGAAGCTTAAATTGTTGGGTGAAGACGAATAAATGATTT TTATATTATATTTCTAACATATCCATTTTCAATTAATCCTGCACCAGTTTTAGATGATTTACCAAAACGCATTCGTGCAT GGTGCACCTTGTAAGTAGGTTTAGATAGCAACATTATGCAGATGACATGGGATTTCCTGTCATGCTAACACATTCATTCT TCGCTAGTTGGGAAGAGAGCAAAGAGAGTACGCCTCCATTTTTATGGTTTACTGGCAGTTGGCCTATCTAAAATTTGGAC CTCCATATCAAGCTGATATATGGGGTCGGGCAATTATCGGATTTAGAATGGAACCTTAAATGACAGCAAGGAGGGTGGTT AGGATGATATTGTGTTGGTGATAGAGTCGGTATCAGGCATCCTATTACTAAGGTCTATCGTAGGAAGGGCAAGAGAGGCC AGAGAGATGGGTCAGTTGCTGGACCCATGGGTTAGGGGGATGGTATGTTATTCTGTTAGCAGTTAGACAATATCTGTTAG TAGTTAGTCAGTTGCAATAGCTGCTAGTTGCATTTAGAGAAGTTAGTTAGTTGAGCCAGGCATTCAGAAGTTGGATCATA CTTGGAGAGTGTCTAGCCTCTCGAATGCTAGGGGAATTGTAACCTTCTTCCCTGTTTCAATAAAAGACATACTTCTGTTG AATCTTCCCACTTTTCTTCTTATTCTGATCCAGTTTCTATCAGTTGGGAAGGGTAATGGAAACTTGAGAATCTCCCCTCA TGCATGTGGGAATAAAATGCAAAACTAGTATGGAAAAAATGGATGGAAAACTAAGAGTGCATTAATAAGTTAAAAATACA TTAATTGACTTAAATTTAAAATCTTAACTTTGAACAGTTGTTTCATGTCTTTAGCACTGCCTTGGATCAAAATAATTCTT TTTGTTGTTGATGCAGTTCAATATCTTATTTATCTAGCCTTCTAGACAAGGAAGATCGGCCTGTACGTATTGCTGCTGGC AAAGCGCTAGCTCTAATATTTGAGATTGGAGTTATGGAGAAACTTTCTGCTAATTCTATAAGCGCAATGACTCGGGAAGA GAGTAAACCACAGGAAAGTTACATTCACTTACAAGGATTAAAAGGAAAGGTGATAACTCAAGTAAAAAACCTGTCTGTTG AGGCTGGTGGAAAAGGTTCTGCAAAGAAAGATCTTAATCATCAGAGGAGCGTGTTCCGAGATATCGTGGAGTTTTTTGAG GTACTTAAGTTACCTTTCTATTTGCTTTTTAATCATTGTGTTAGGAGTTGGTAAGATATTCTGTTTATTTGATAAAAAAT CCTCACCAGCAACACCGAATGTGGGTCTTGTGAGAACGAAAAGTATAAATTGTCTCCGAGTGTTCTAGAGATTCAGAACT CTCTCACAAATCCTCCAAAATTTCAGCCATACCCTCCCTAATCCTCCATCTTATTTATAGCCTCACCTCACCTCACCCCA CCTCACTCACTCTCTATCTCACTACCTTTAACTAACTAACGGTAACTCCCTTTAACTAACTAACCATAACGATTGTTGGC TAGTTAGTTACAATAACAGGCTCTCCTTAAGAGGTCTACTCCTATCCTTTTCTAATAATAGACTATATTGCGTATGGAGA GTTTAAGCTTCTTTACTGACCCCTTACATTATTACCTTGTGTTCATAGTATGGTTACACTCCTGAAATTTCTATGAAGAT TGGCGGTGATTCACTGCAAACATCTTCATGGTCCCAAGTGATACAGGTTTGATTTGCATTGATCTGATATTCTGACAGAA TTCCTTTTCTGCATTAGTATTTTGACATACACTTTATTTGCAGTTAAACTTTATCAGGCACTTTCTAGGGGGTGGTTTCA TCAAGCATATGCAGGTTGGCTTTCTCTCGGTATTTTCCTTTAGTAAGTTTCAAATTGTTCGAAAAGCTTATTATTTCAGT GGTTAATCTTTCATTTTTATTTTCTTCTTCTCCATCGGCGAACTAGGAAAACGAATTCCTTCATGATGTCTTTGGTTTCA CACCAAGAAGAAGATATCTTAATAACAATGAACCTCGAATGTCTAGTGGTGAGAAGGTTAGTTTGTATAACTTGTCTATA TCTGTTTTTGTCACTGAATGTTGTATACTGATAGTCTTCAGGTGTTATAAACTTATCTTTTACTGTTTCTCATTATTTTC TGCTGATCTGCGTCATTTTCCCTCTTGCAGAGAATGTTCAAGTCTCCAAATTCGCCTCAGAGTAAGGCTAGGACCCAGTT TCTTAATAAGCAACGGCTGTTATCTGAGGTAGGCATCCTTATCATATAAATATCATTAACTTTATTTTCCTGTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0033300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGCATCAATTTGTTGACAAAAAATTTGCCACCTTATTACATCAGTGTCTTGCTTCAATAAAAAGAGGTTCCAAACA GGCATCTGCAAAGGAGGTAGCTTTGGCATCTCATGTCATCGGTTTGTTGGCCCTCACTGTTGAATGTGGTGATAATGCAC GTGAAATATTTGAGGAATCAATTCGTCCTCTAGATGAATTTCTCACATCTAAATCAGATTCGATAAAGGTTCCATCATTG CTGGAGTGCTTGGCTATAATCACTTTTGTTGGTGGGAACAATCAAGAAGAAACAGAGAGATCGATGGACATAATGTGGCG AGTTATTCATCCCAAATTAGGTTCCAATGTAGTTACAGTCAAACCTTCAGCTCCATTAATAACGACTGTGGTATCTGCTT GGTCCTTTCTCCTCTCTACCATGAGCGAGTTGAAGTTAAATTCTAAAAATTGGCAAAATTCAATATCTTATTTATCTAGC CTTCTAGACAAGGAAGATCGGCCTGTACGTATTGCTGCTGGCAAAGCGCTAGCTCTAATATTTGAGATTGGAGTTATGGA GAAACTTTCTGCTAATTCTATAAGCGCAATGACTCGGGAAGAGAGTAAACCACAGGAAAGTTACATTCACTTACAAGGAT TAAAAGGAAAGGTGATAACTCAAGTAAAAAACCTGTCTGTTGAGGCTGGTGGAAAAGGTTCTGCAAAGAAAGATCTTAAT CATCAGAGGAGCGTGTTCCGAGATATCGTGGAGTTTTTTGAGTATGGTTACACTCCTGAAATTTCTATGAAGATTGGCGG TGATTCACTGCAAACATCTTCATGGTCCCAAGTGATACAGTTAAACTTTATCAGGCACTTTCTAGGGGGTGGTTTCATCA AGCATATGCAGGAAAACGAATTCCTTCATGATGTCTTTGGTTTCACACCAAGAAGAAGATATCTTAATAACAATGAACCT CGAATGTCTAGTGGTGAGAAGAGAATGTTCAAGTCTCCAAATTCGCCTCAGAGTAAGGCTAGGACCCAGTTTCTTAATAA GCAACGGCTGTTATCTGAGGTAGGCATCCTTATCATATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0033300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQHQFVDKKFATLLHQCLASIKRGSKQASAKEVALASHVIGLLALTVECGDNAREIFEESIRPLDEFLTSKSDSIKVPSL LECLAIITFVGGNNQEETERSMDIMWRVIHPKLGSNVVTVKPSAPLITTVVSAWSFLLSTMSELKLNSKNWQNSISYLSS LLDKEDRPVRIAAGKALALIFEIGVMEKLSANSISAMTREESKPQESYIHLQGLKGKVITQVKNLSVEAGGKGSAKKDLN HQRSVFRDIVEFFEYGYTPEISMKIGGDSLQTSSWSQVIQLNFIRHFLGGGFIKHMQENEFLHDVFGFTPRRRYLNNNEP RMSSGEKRMFKSPNSPQSKARTQFLNKQRLLSEVGILII
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12354:SF12
1 353 353 2.4E-163 –
Pfam
PF05004
1 254 254 4.0E-63
IPR007701
PANTHER
PTHR12354
1 353 353 2.4E-163
IPR039777
SUPERFAMILY
SSF48371
15 184 170 1.23E-6
IPR016024
Pfam
PF04836
299 349 51 9.7E-14
IPR006921
MobiDBLite
mobidb-lite
319 338 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0033300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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