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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0038500 |
| Transcript ID | LotjaGi5g1v0038500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT4G02210.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q3V7M2|PDXJ_BURMA Pyridoxine 5'-phosphate synthase; TrEMBL-Plants: tr|K7LCA7|K7LCA7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0038500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6414727..6418634) extracted from Lotus japonicus Gifu genome v1.2.
GATTTGATTTGTGTTTATTGTCACTGTTTTTTGCTAATCCTTGATGATCGGAAAAATATTTCAGGCTACTGCTATAAGTG GATACACTAGCAACTCTGCTTCTGCCAAGAAGTGCAGAAAGAAGAAGGTAAAGTTATTCATTTCATCTTATAGTCAAGCC TGTGATTTTAATATTTGTAGTGAGTTTTATTTCAAAACAACCATGGACATATTAGGATAGAAAGAACTTTTCACTAGCAA ATTCTTCCAGTTTATTTAATTGGACATATTGTCATTTAGCTCTGAAACTAAAAGGGATAGTTGTGAATAAAATTATAGGG ATAGTTGTGACTAAAACCTTTCTGATTTTGTGCTCTTACACTCTCTGTTCTTCAGGTAAAAAATATAGGATTTACTGGCG TTTTCAGGTTGATTTTTAAGCCGCTAGTTAATGAATTTCCTGGCTTTGCAGCAGTATGTTATTCATTGAGGCAGAAGGTA GGTTACCTCTTCTTAAAACATTAATTTCCCACTTGTTTCAGTGCCCCTACATTGGAGCAGTATGCTTGTTCTTTTCTTTC TTTTTGGGGTGACTTATCAAATGATATATTTGTAGAACTCGGATTGGGTGGTTAACTGTTTACTAAATTTTGTTGCTTCC TAATTTTATGATTAGTAAAGGCTTGTGATCATTTGAGGAAGCATGTTAACTTGAAGATGTTACAAATAGGTGTATGTAAC ATAAGCATTTAATTTAGGAGTTTGAGGATGATATACTGCCAAGTGCCAACTGAAGATAAGTGCTAGGTAGTTTTAGAATA CTTGCTGGGATTTCGTTTCATTTTGTGTGCCCTGATAATTTCTATGACTTGTAGTAGGACTACTTCACCTTCTAGAGCTT AGAATAATTGGTAGTAACTAGTTAGTCCGATAATCTGAACCAGGTAAAATATCTTAATCCAAACCTGCTTTGCTTCTGAA AATCTGATATGGAATTTGTTATTTCTTGCTTGTCAAAAGTCATGCTCATAATTTATCAGCAAAAAGAATTTATGGAGTAA AGGAGATTTTATTACATTTTCATTGCTGTGGTTATTCCGGAATAGATTCAATTTAGTTGGAAAAGAGGTCCATCAACTCT GCTATTATGTCCAAGTTTAGTTTTATAATCTGCACAGAGATAAGACTTGCAGCTTATAGTCTGAATTGATTTTAGAACAT TTCATCATAAAACCAAACACATATATATGTTTTAATCACATCTTATTATATGAGCTTTTTAATCACATCTTATCCATTTT TATGTTTAAACTAGCTGATTTTGAATCTGATTGAGTTAGCTTCTCTTACTTCCTATTTTCTTTATAGTGTCATGCAATAT TGATGTTTTATTATATGTTTGGCTTAATCCTCAAATTGGTCCTTGTCTTTGAGTCGCCGTGTGATCTAAGTCCCTCACCG GAAAAATTTGTGCAAAAGGTCCTCATCATTGCAAAACGTATGGAGCAAGTCCTCGCCGGAGACCGGAGCTCCGGCGAGGG ATGAAATGGCACGCTGACTGGGCTAAGTGTGCTGACATGGATTTTAAAATAAAAATAAAAATTACACATCAGGAAAATAA ATTAATTTAAAAGCCCAAAATTAATTTAAAAACCCAATTTCACCATAAATTTATTAAAGCTAAAAAAACAAAAACTCATT AACTATAATTAAAAACAACAACTTTTTTTCCCAGATAAAAAATCCCTAATCTAGTAATCTGGAACGTTCTCACTCCAGAA ACTCATTTCCAGAAATTTTCCAGAAGCCCCTCATTCAGATCCTCTCATCTCAACTTCCTCATGGACATACAATCTAACCC AACAACAACAACAATCGAACTCAGTTTCAATCGAATCCTAACCGCTTTCTCAAGGTCGAAATCAACAGAGGAAGACTCGA TTCAATTTGGGGGTGATGAAAGGGTGAACCAAACCCTGGGCTTCCATCCAAGAGCCTTGCCCTTCCAGATCTGCGACTTA GATAAAGATGAAAGGGACCCAAAAGCTCGCTTTTGACGCTCTGAAAAAGCTCAACGTTGTGAAGGGAAGAGGAGAAATTC TGCAACGGACCAGGACGCGAGACGGTATTGCAGGAGCTTCAGGTTCCACTCCCGAGAGAGGGAAAAGAGAGGTTGCAGCT CTTGATCCTCATGAAGGTGAGGATGAATGACGACACCGCAAAGAGGAGGCGGCGGTGGCGCACAGATCCAGGGAAGACGA TGATGGTAACGCTGGTTTCCATGGCTATGCAGATCCCTCCCTACAAGGTTGTGGATTTGCTTTCTTTTGGGTTTGTTATT GTGAAGATTCTGGGTTTTGTTCATACCATTTTTTCTCTTTATTAAATTAACAGTGCTTCGTGTATGTGTTTTGAGCTCGG TGGGAGGTTCCAAGGGGTGCTGATGCTGTGTTCGTTCCAGCCTTTGAATTGTGGTTGTTTGTTTCTTTGTTTTGTAACTC TCTGTCTTCTATGCTTTCTTTCTTCTTTTTATTGTCTTAGTACTGTACCTGTGTTGCCACCCCACATGAGTTTATTTCAA GATTTTGAATGTAATAAAGATGATGGGATAAAGATGATGAGATAATGAGATGAATGTAGTTGATTATGAGATAATGGGAT CAAGATTCTGAATCGGTGATTTAGAATTGAGGTTAATTTTGGGGAAATTGGATTAATTTGGGAGGAATTTTTTTTTAAAA TTAAATTAGGGTTAATTTTGTTAATTGATTTTATTTTTATTAATTAAATTAAAATTTCTTATGTGTAATTTATTTTTTAT TTTATTTTATTTTTTTAATTCCACGTCAACTTCATTAATCCAGTCAGCGTGCCATTTAATCACTCGCCGGAGCTCCGGCG AGGACTCGCTCCATACGTTTTGCAATAATGAGGACCTTTTGCACAAATTTTTCCGATGAGGGACTTAGATCAGACGGCGA CTCAAAGACAGGGACCAATTTGAGGATTAAGCCTATATGTTTTTTTTAGTTAACAAATGGATCTTAGAGTAATTGACACT TCAGTTCTTTTACGAAAACGTAAAAGAAATGAAGAAGAAGAGGCAAAATTGCAGGAGCAAATAACATATGATTTCTGTTA CAAATGAAGATGCATGGAATGAGTATGTCAAGGTAATCATTTTTAATGTTATTACTATTTAATTAAATTAGTGTTTGTGT TAGTATTAATATGCTGCCTATTTTCTTTGTAGTCACATAATGACGCTAAGAGGTTTCAATTTAAGGTGATTGCTAATTGG GATGACATTGTAGACTTGTGTGCTAAAGATAGAGCAACAGGAATTGGAGCGGAGACATCCTTGGATGCAGATGACATCAT GAGCAAAGAAGCAAATGAGGATGGAGCTAATATTGTGGATATTGATGCTGATGAACAAAGCTCTACAACAAGGAAAAGCA AACAACCAATGGAATTCAAAAAGGGAAAAAGTGGAGAGAAGAATGGGATAATTACTTCAATGAATAAAGTGGCTGAGTCA TTGAGTGAATTTGTGCAAGCAACTAGAAAAGGGGTGAAAAATGTCCAAGAAGTGGTTCATGATGTGATGGATGAGCTAAA GAACATTCCGGACCTTAATGGCACTCAATGGCTAAAAGCAGTGGATTGGCTTTCAGAAAATCCAAATAAGTTGGAGATTT TGAAAGCTCTTCCCATGGAGAGAAAGAAAGATTACATCTTAGCTTTTATGCACTGATTCATGATTTGCTATAGTTTATGG ACTCATTTGTAGTGTTTCCAACTTTTCATTATGCCACTGTTGAGACTTTGTTTTATTTATTTTTCATTTGGATTGATGTT AGCACTTGTTATAAACACAGTTTGAAATTTAAATAATAGAAAATGTGATATCTCGATGAATGTTTGTT
CDS sequence (LotjaGi5g1v0038500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCTGTTACAAATGAAGATGCATGGAATGAGTATGTCAAGTCACATAATGACGCTAAGAGGTTTCAATTTAAGGT GATTGCTAATTGGGATGACATTGTAGACTTGTGTGCTAAAGATAGAGCAACAGGAATTGGAGCGGAGACATCCTTGGATG CAGATGACATCATGAGCAAAGAAGCAAATGAGGATGGAGCTAATATTGTGGATATTGATGCTGATGAACAAAGCTCTACA ACAAGGAAAAGCAAACAACCAATGGAATTCAAAAAGGGAAAAAGTGGAGAGAAGAATGGGATAATTACTTCAATGAATAA AGTGGCTGAGTCATTGAGTGAATTTGTGCAAGCAACTAGAAAAGGGGTGAAAAATGTCCAAGAAGTGGTTCATGATGTGA TGGATGAGCTAAAGAACATTCCGGACCTTAATGGCACTCAATGGCTAAAAGCAGTGGATTGGCTTTCAGAAAATCCAAAT AAGTTGGAGATTTTGAAAGCTCTTCCCATGGAGAGAAAGAAAGATTACATCTTAGCTTTTATGCACTGA
Protein sequence (LotjaGi5g1v0038500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISVTNEDAWNEYVKSHNDAKRFQFKVIANWDDIVDLCAKDRATGIGAETSLDADDIMSKEANEDGANIVDIDADEQSST TRKSKQPMEFKKGKSGEKNGIITSMNKVAESLSEFVQATRKGVKNVQEVVHDVMDELKNIPDLNGTQWLKAVDWLSENPN KLEILKALPMERKKDYILAFMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 177 | 177 | 5.8E-51 | – | |
| PANTHER | 1 | 177 | 177 | 5.8E-51 | – | |
| MobiDBLite | 75 | 96 | 22 | - | – | |
| MobiDBLite | 76 | 96 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0038500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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