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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0038700 |
| Transcript ID | LotjaGi5g1v0038700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|G7JY85|G7JY85_MEDTR MADS-box transcription factor family protein; Found in the gene: LotjaGi5g1v0038700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6512644..6513198) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGTGATTGCAGGCATGGCTATGAAGAAGGTGAAGCTCGCCTATATCACTGATAATATGGCAAGAAAGATTTCATACA ACAAAAGGAAGAAGAATATCATCAAGAAGGTGAGTGAACTCACCACTCTCTGTGGAATAGAAGCATGTGTTATAATTCCC AACCCATTTGATTCCAAACCAGAGATTTGGCCAAATGTGGAGGGAGCAATGAAGGTGATTGAGAGGTACCAGAATACACC TGTGAAAAAGAAAAACATGACTTTGAACCAGGAGAGCTTCATAACGCAGATGACTTCCAAATCACAAGACAAGCTAAGCA AGGTGTGTCGACAGATTCGTGAGAAGAAGCTGACCATGTCTGCCTTCAATTGTGTGAAAGATGGAGCCCTTCCAGAAGGC CTGATCGTGACAGATATTAATGATATCAAGATGCATCTTGAGAAGATGATGAAGGAGGTCAATGATGAGATTGCTAAACG TAATTGATCAAATAATATTTCAATTGTTTCTTGTCATTTTGGTATTGTCCACAAAATAATTATGTTTTATCCGGC
CDS sequence (LotjaGi5g1v0038700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGAAGAAGGTGAAGCTCGCCTATATCACTGATAATATGGCAAGAAAGATTTCATACAACAAAAGGAAGAAGAA TATCATCAAGAAGGTGAGTGAACTCACCACTCTCTGTGGAATAGAAGCATGTGTTATAATTCCCAACCCATTTGATTCCA AACCAGAGATTTGGCCAAATGTGGAGGGAGCAATGAAGGTGATTGAGAGGTACCAGAATACACCTGTGAAAAAGAAAAAC ATGACTTTGAACCAGGAGAGCTTCATAACGCAGATGACTTCCAAATCACAAGACAAGCTAAGCAAGGTGTGTCGACAGAT TCGTGAGAAGAAGCTGACCATGTCTGCCTTCAATTGTGTGAAAGATGGAGCCCTTCCAGAAGGCCTGATCGTGACAGATA TTAATGATATCAAGATGCATCTTGAGAAGATGATGAAGGAGGTCAATGATGAGATTGCTAAACGTAATTGA
Protein sequence (LotjaGi5g1v0038700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMKKVKLAYITDNMARKISYNKRKKNIIKKVSELTTLCGIEACVIIPNPFDSKPEIWPNVEGAMKVIERYQNTPVKKKN MTLNQESFITQMTSKSQDKLSKVCRQIREKKLTMSAFNCVKDGALPEGLIVTDINDIKMHLEKMMKEVNDEIAKRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 47 | 47 | 14.325 | ||
| SMART | 1 | 60 | 60 | 3.0E-15 | ||
| PANTHER | 3 | 152 | 150 | 1.4E-38 | – | |
| PANTHER | 3 | 152 | 150 | 1.4E-38 | – | |
| SUPERFAMILY | 4 | 83 | 80 | 2.22E-19 | ||
| Pfam | 11 | 50 | 40 | 4.2E-13 | ||
| Gene3D | 13 | 110 | 98 | 3.9E-11 | ||
| Coils | 141 | 156 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0038700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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