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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0040400 |
| Transcript ID | LotjaGi5g1v0040400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Conserved oligomeric Golgi complex subunit 4-like protein; TAIR: AT4G01395.1 conserved oligomeric Golgi complex subunit 4; Swiss-Prot: sp|Q8L838|COG4_ARATH Conserved oligomeric Golgi complex subunit 4; TrEMBL-Plants: tr|Q2HTC4|Q2HTC4_MEDTR Component of oligomeric protein; Found in the gene: LotjaGi5g1v0040400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6825775..6830013) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAATCTCAACCATCAAATACATATCTCACACTATGTAAAGGAACTAAGGAAGTGTTATGGTACCACCACCCATGATA TAAGCCATCTTGTCTTCTACTCTCATTTCACCTTTTTCTTCCACGACCAAACGGGGACTATTGTGTCCAAAGAGAGTTAA GACCCTTCGAACCTTATTTAATCTGGGCCGTTGGTTACTACACTAAAACATATCCTACGGCCCACACACTTTCCTCCCTC TTCATTTGCTCTCTCACTCTCGTGCCAGATCTCATCTGAATGCAGAGAAAAATGGGGTCCACTCCCCGCGGCAATGGATC GGAGGAAGATATCACCGGCAACGGCGGCGCCGTCACGTCGTCAATAGATTTCGGCAAAGCAGAGGCGGTGGAGTACGTGC GTTCATTAACTGACGTCGGAGCAATGACGCGCCTCCTCCACGAGTGCATTGCTCACCAGCGAGCCCTCGACACGCAACTC GATGACCTCCTCTCCCAGCGCGCCGACCTCGACCGCCACCTCGTCCAGCTCCAGCGCTCCTCCGACGTCCTCGATATCGT CAAATCCGACTCCGATCACATGCTCTCCAATGTCTCCTCCACCTCCGACCTCGCCGACAGCGTCAGCCGCAAGGTTCGCG AACTCGACCTCGCACAATCGCGCGTCAGGTCCACGCTCCACCGCATCGACGCCGTCGTTGAGCGCGGAAACTGCCTCGAC GGCGTCCTGCGAGCCCTCGACGAGGAGGATTACGAGTCCGCTGCTAGATACGTCCAGACGTTTCTCCAGATCGACGCGCA GTTCAAGGATTCCGGCTCCGATCAGATTCAGCGTGAGCGGTTGATGACTGCGAAGAAGCAGCTCGAAGGGATCGTGCGGA AGAAGCTCTCCTCCGCCGTGGATCAGCGCGATCACAACGCGATTCTGAGGTTTGTTCGTCTTTACACGCCTTTAGGTTTG GAAGAAGAGGGTTTGCAGGTTTATGTTGGGTATTTGAAGAAGGTGATTGGGATGAGGTCTAGGATGGAGTTTGAGCAATT GGTTGAGTCCATGGAGCATAGTAATAGTAATGTGAATTTCGTTTCGTGTTTAACCTCTTTGTTTAAGGACATTGTGTTGG CGATTGAAGAGAATAGTGAGATTTTGAGTGGTCTTTGTGGTGAGGATGGGATTGTGTATGCGATTTGCGAACTTCAGGAG GAGTGTGACTCGCGGGGTTCTGTGATCTTGAACAAGTACATGGAGTATAGGAAGTTGTCTAAGTTGTCATCTGAGATAAA CGCGCGCAACAACACCATGCTCGCTGTTGGAGGAGGAACTGAAGGGCCTGACCCGAGAGAGGTTGAGATGTATTTGGAAG AGATACTTCAGCTTATGCAGCTCGGTGAGGACTACACTGAGTTCATGGTTTCGAAGATTAGAGGGCTTGCTTCTGTTGAT CCTGAGTTGCTTCCTCGCGCAACCAAGGCCTTCAGGAGTGGTAGCTTTAGCAAGGTTGTGCAGGATGTGACTGGGTTTTA CGTCATTCTTGAGGGATTTTTCATGGTGGAGAATGTGAGGAAGGCTATAGGGATTGACGAGCTCGTGCCTGACAGCCTTA CCACTTCTATGGTGGATGATGTGTTCTATGTCTTGCAGAGTTGCTTGCGAAGGGCAATATCTACTTCGAATATCAATTCT GTTGTGGCGGTTTTGGGTGGTGCTAGCAGTTTGTTGGGCAATGAGTATCAAGAAGCCTTGCAACAGAAAATAAGAGAGCC AAACCTTGGTGCAAAGTTGTTTTTTGGTGGTGTCGGTGTGCAGAAGACTGGGACAGAAATTGCAACTGCTTTAAATAATA TGGATGTTAGCAGTGAATATGCTCTGAAGCTAAAACATGAAATTGAGGAACAATGTGCTGAGGTAAGTGCTATAATATCT TAATAATACCACCTTACAGTTATTATACTTGACAATTATATTCATTAGATAGGCACGTGTGGTTGGTACGTCATCATTGC CTTATCCATGCTGTGTTCAGTGTTCTACTACAGGTTGATTTGAAATTCCTTGGGTTAGCATTAACCATAAAACAATGATT TTTAATTTTTATCAAAAATCATGATGAAATCAATAGAGCAAACAATTTTGGTAATCAATTGTATAGAGTTTCTGTGTCAT TTAATATCTATAGGATTTAGTTTGAATCTGTACTTTGTAGTAACATGTGTTGGAGTATGATAATAATCTTGTCATTCTAG CCCGTATGTCCAAAAGTAAAATTTGTTGTCTGATATGTACAGATAAGGCTTTGATAAATCTAGAAAGACAGCAGTATAGA ACATAACACAATTTCAAGATTCACATTTTGGCAACTTCAAAATTACAGATCAAAGATGCACCCCCCCCCCCCCCCTAATG TGTGATAAATATGGTCGAATTTGTATCAATTCTTTTCTGATATTATATAAATCTGTACACGGTTGATGATGGAAATGCCC TCATAGTATGCTCTAGAAATGGTGTATATACTTACCTGTTTGGTATACCTAGAAATGTCCCCATATTATTTAAAGTGTCA ATTTTGAAAAACATTGGTAGTGATAATTATAAAATAAGTAGTTCTACATGTACTTACAGAAAACAAAGAACTGTGTTTTT TCAGTACCAATAGAGAATAATCACTGATAATCTTGAAGTCTTGATGGGAAGGATTATTTTTATTAGACGGTGGACGTATC TTTAATGCTGCAAGTCTGCAATAGACTTACATTAGCAAGTGTGTAGGTGGAACAGACTTGCAATTTTTTTGAATTCTTAA TTTACATTTACATAGCTTTCTGTCTTTATGAGTCATAAACTGTACCTCATACTCTTATTGATGGTAGTTTAGTTTGGCTA TTTAATATGTTTCATTTTAAAATTGCAGCAATAGCTGACTGAATTTCTTTGTACAGGTGTTTCCTGCACCAGCTGATCGA GAAAAGGTCAAATCTTGTTTGTCTGAGATGGGAGATTGCAGCATTGCTTTCAAGCAGGCTTTGAATGCTGGAATAGAACA ACTTGTGGCTACCATTACACCACGAATACGGCCAGTATTAGACAGTGTAGGAACAATCAGTTATGAGCTTTCAGAGGCTG AGTATGCCGATAATGAGGTGAATGACCCTTGGGTTCAGAGACTTCTCCATGCTGTGGAGACAAATGTGGCTTGGCTGCAG CCACTAATGACTGTTAACAATTATGATACTTTTGTTCATTTGATTATCGACTTCATTGTGAAGAGACTTGAAGTCATCAT GATGCAGAAAAGATTTAGCCAGCTTGGCGGTCTTCAGCTTGACAGAGATGCTCGAGCTCTGGTGAGCCATTTCAGTATCA TGACGCAGAGAACTGTTAGAGACAAGTTTGCACGTCTTACTCAAATGGCAACAATTCTAAATTTAGAAAAGGTGTCTGAG ATTCTAGATTTCTGGGGTGAGAACTCAGGTCCTATGACCTGGAGATTAACTCCAGCAGAGGTCAGGCGCGTATTGGGTCT GCGAGTTGATTTTAAACCAGAAGCAATTTCTGCTCTGAAGTTGTAATATCAGCTGCATGGTCTTCACATTCTTTTGTTTT ATTCTATTTTTTAGTTTTTATCTTATATGTATCACATCTTCATTCTTATTGTCATTAGTTTTAGTGTTTGGGGTTAACAT AAAGTTGTATTATGCTATTTTTGTTATACTAGCTTCAAAAGCAAAAGAATTCAGTGTAATCAGATTTGCCACCAAGATAG TCATTGAAGATCTTTATATGCATGGACCATCTTGTGTGAAACAATCATTGAAGATCTTTCTTGAGACTTACAATACACAT TTCAAATCAATGAAGATCATTGTTTAATGAAGTTCATCCATAGCCTTTTACCTCCAAATCCTACTGCCACGCATTTTGTT GAAGAATATACCAATGTTGCACCTGATATTTAGTAAATACAATGGCAGAAAAGCTCCTGCATTCTTTAGCGGATGACGAC ACCGATCTGCGAAAGCAGATAGGATGCATATCTTTGGTCGTCAACATATTCTCCTGGCTTGCTGCATTATCCAAAAGAGG CTTCATTCTAGTACCCCCAAGTGGGGATGTGTTTATTTTCACTTATTCAGTTTGCAGAAGCTTGTCTTTTATGTCTTCCC TTTTGTTTAATTTTACTCAATCTCTGAAATGATTTATGATTTATCATTCAAGCTTTTGTTTAGGGTTGAGAGCGTATGG
CDS sequence (LotjaGi5g1v0040400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGAAAAATGGGGTCCACTCCCCGCGGCAATGGATCGGAGGAAGATATCACCGGCAACGGCGGCGCCGTCACGTC GTCAATAGATTTCGGCAAAGCAGAGGCGGTGGAGTACGTGCGTTCATTAACTGACGTCGGAGCAATGACGCGCCTCCTCC ACGAGTGCATTGCTCACCAGCGAGCCCTCGACACGCAACTCGATGACCTCCTCTCCCAGCGCGCCGACCTCGACCGCCAC CTCGTCCAGCTCCAGCGCTCCTCCGACGTCCTCGATATCGTCAAATCCGACTCCGATCACATGCTCTCCAATGTCTCCTC CACCTCCGACCTCGCCGACAGCGTCAGCCGCAAGGTTCGCGAACTCGACCTCGCACAATCGCGCGTCAGGTCCACGCTCC ACCGCATCGACGCCGTCGTTGAGCGCGGAAACTGCCTCGACGGCGTCCTGCGAGCCCTCGACGAGGAGGATTACGAGTCC GCTGCTAGATACGTCCAGACGTTTCTCCAGATCGACGCGCAGTTCAAGGATTCCGGCTCCGATCAGATTCAGCGTGAGCG GTTGATGACTGCGAAGAAGCAGCTCGAAGGGATCGTGCGGAAGAAGCTCTCCTCCGCCGTGGATCAGCGCGATCACAACG CGATTCTGAGGTTTGTTCGTCTTTACACGCCTTTAGGTTTGGAAGAAGAGGGTTTGCAGGTTTATGTTGGGTATTTGAAG AAGGTGATTGGGATGAGGTCTAGGATGGAGTTTGAGCAATTGGTTGAGTCCATGGAGCATAGTAATAGTAATGTGAATTT CGTTTCGTGTTTAACCTCTTTGTTTAAGGACATTGTGTTGGCGATTGAAGAGAATAGTGAGATTTTGAGTGGTCTTTGTG GTGAGGATGGGATTGTGTATGCGATTTGCGAACTTCAGGAGGAGTGTGACTCGCGGGGTTCTGTGATCTTGAACAAGTAC ATGGAGTATAGGAAGTTGTCTAAGTTGTCATCTGAGATAAACGCGCGCAACAACACCATGCTCGCTGTTGGAGGAGGAAC TGAAGGGCCTGACCCGAGAGAGGTTGAGATGTATTTGGAAGAGATACTTCAGCTTATGCAGCTCGGTGAGGACTACACTG AGTTCATGGTTTCGAAGATTAGAGGGCTTGCTTCTGTTGATCCTGAGTTGCTTCCTCGCGCAACCAAGGCCTTCAGGAGT GGTAGCTTTAGCAAGGTTGTGCAGGATGTGACTGGGTTTTACGTCATTCTTGAGGGATTTTTCATGGTGGAGAATGTGAG GAAGGCTATAGGGATTGACGAGCTCGTGCCTGACAGCCTTACCACTTCTATGGTGGATGATGTGTTCTATGTCTTGCAGA GTTGCTTGCGAAGGGCAATATCTACTTCGAATATCAATTCTGTTGTGGCGGTTTTGGGTGGTGCTAGCAGTTTGTTGGGC AATGAGTATCAAGAAGCCTTGCAACAGAAAATAAGAGAGCCAAACCTTGGTGCAAAGTTGTTTTTTGGTGGTGTCGGTGT GCAGAAGACTGGGACAGAAATTGCAACTGCTTTAAATAATATGGATGTTAGCAGTGAATATGCTCTGAAGCTAAAACATG AAATTGAGGAACAATGTGCTGAGGTGTTTCCTGCACCAGCTGATCGAGAAAAGGTCAAATCTTGTTTGTCTGAGATGGGA GATTGCAGCATTGCTTTCAAGCAGGCTTTGAATGCTGGAATAGAACAACTTGTGGCTACCATTACACCACGAATACGGCC AGTATTAGACAGTGTAGGAACAATCAGTTATGAGCTTTCAGAGGCTGAGTATGCCGATAATGAGGTGAATGACCCTTGGG TTCAGAGACTTCTCCATGCTGTGGAGACAAATGTGGCTTGGCTGCAGCCACTAATGACTGTTAACAATTATGATACTTTT GTTCATTTGATTATCGACTTCATTGTGAAGAGACTTGAAGTCATCATGATGCAGAAAAGATTTAGCCAGCTTGGCGGTCT TCAGCTTGACAGAGATGCTCGAGCTCTGGTGAGCCATTTCAGTATCATGACGCAGAGAACTGTTAGAGACAAGTTTGCAC GTCTTACTCAAATGGCAACAATTCTAAATTTAGAAAAGGTGTCTGAGATTCTAGATTTCTGGGGTGAGAACTCAGGTCCT ATGACCTGGAGATTAACTCCAGCAGAGGTCAGGCGCGTATTGGGTCTGCGAGTTGATTTTAAACCAGAAGCAATTTCTGC TCTGAAGTTGTAA
Protein sequence (LotjaGi5g1v0040400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRKMGSTPRGNGSEEDITGNGGAVTSSIDFGKAEAVEYVRSLTDVGAMTRLLHECIAHQRALDTQLDDLLSQRADLDRH LVQLQRSSDVLDIVKSDSDHMLSNVSSTSDLADSVSRKVRELDLAQSRVRSTLHRIDAVVERGNCLDGVLRALDEEDYES AARYVQTFLQIDAQFKDSGSDQIQRERLMTAKKQLEGIVRKKLSSAVDQRDHNAILRFVRLYTPLGLEEEGLQVYVGYLK KVIGMRSRMEFEQLVESMEHSNSNVNFVSCLTSLFKDIVLAIEENSEILSGLCGEDGIVYAICELQEECDSRGSVILNKY MEYRKLSKLSSEINARNNTMLAVGGGTEGPDPREVEMYLEEILQLMQLGEDYTEFMVSKIRGLASVDPELLPRATKAFRS GSFSKVVQDVTGFYVILEGFFMVENVRKAIGIDELVPDSLTTSMVDDVFYVLQSCLRRAISTSNINSVVAVLGGASSLLG NEYQEALQQKIREPNLGAKLFFGGVGVQKTGTEIATALNNMDVSSEYALKLKHEIEEQCAEVFPAPADREKVKSCLSEMG DCSIAFKQALNAGIEQLVATITPRIRPVLDSVGTISYELSEAEYADNEVNDPWVQRLLHAVETNVAWLQPLMTVNNYDTF VHLIIDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSHFSIMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGP MTWRLTPAEVRRVLGLRVDFKPEAISALKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 41 | 750 | 710 | 7.5E-244 | – | |
| PANTHER | 41 | 750 | 710 | 7.5E-244 | – | |
| Coils | 67 | 87 | 21 | - | – | |
| SMART | 188 | 492 | 305 | 3.4E-117 | ||
| Pfam | 190 | 490 | 301 | 1.5E-75 | ||
| Gene3D | 505 | 581 | 77 | 1.7E-17 | – | |
| Gene3D | 582 | 750 | 169 | 3.8E-66 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0040400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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