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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0044100 |
| Transcript ID | LotjaGi5g1v0044100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G23970.1 F-box family protein; Swiss-Prot: sp|Q9LIR0|FB183_ARATH Putative F-box protein At3g23970; TrEMBL-Plants: tr|K7MHP5|K7MHP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0044100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:7486665..7488247) extracted from Lotus japonicus Gifu genome v1.2.
AAAGATACACTTTAGATATAGTAAATGCGACACTTGGAGATTAAGTAACGGATTGAAATAAATAGCATTCGTTTTTGACA AGTTAGCACAACTGAAATCATAAGACCAATTTTGCTTCTTCTCATTTAATTTTGTGTCTCAGCCTCTAGTTCAAGATTCA GAGTGTGTGTTCGTTCTGCTGTGTTATTCATGGCATTCTGTGAGGATGAGCTTTTTCAAATCCTTTCATGGCTTCCAGCT AAATCATTGTGCAAGTTCAAGAGTGCTTGTGGGTGGACCTTAAATTTCAGCAAAGAGACATATTTTTGCATGAAGAATGC ACAAAATATGTTGTTACAAGATGATACTGGCTTCTTCATACAACAAGACAATGGTCAGAGGTTTAGTGGAAGAATTGAAA GCCACTCGTTCAATGATGAGGAATTATTATCTTCTGGGGTACCTCAAGATTTTCTAAGTTTCTTGGCGAAATCCGCGAAA ATCATCTCATCTAGCAATGGACTAGCCTTGTGTCGAAGCACGTCGAGAGAGAGTGAAGTTGAGCTTTTTCTGTGCAATCC TGTGATGAAAACATGGCTCCCAGTTGCTACCCCTGCCAGTGTTCATGAATTCCCTGATGTTGCTGTGGATGTTGTGTTTC AGTGCATGAACGATAATCTTGATGTGGATGACTATAGAATAACCTTGATTGACGGCCCCCTTGAATGGTCATCATATCGT GATTTGAAAGTGTATTCTCCAAAGGAAGGTGTGTGGGAAGCCATGGAGAAAAGCTTCTTCATTGGTAGCAGGAACATGAG ATTTGATATGCCGGTGACTCTGAATAATTCTCTCCACATCATATCTGATAGTTCTCCATCTTTTACCAAGTCAAGTCCTT TCTTTAGGCCATATATAATGGCTTACAATTATGAGAGTGGTGAATCAACAATGTTGAGGCTCCCAAGAGATGCAAGAAGG GGTTCTCATGATGATAGTTGCAACATGGGAATTTTTGAATGGGGGAAGGCGAAGAGTTCAGATCATTCAATTTGTTTAGT GAGGTACCGGAAGCGCGTCTTTACCGTATGGATCTTGGAAGACTACAAGTCAACTTTATGGAGAAGGGTTTTGAAAATAA GGGTGAAAGCGATGGGGTTGAAGGAGGAAGATCCAAGAGTTGAAGGGTTTGCCGTTATGAATGGTGATTGCTTGATTTTC GCCACAGAGAAAAAGGTTTATGCATATAATTTGTCTGGTGGCAAACATCTTCAGAGGGCAAAAGAAATATGTGAGCATGG ATTGAGAGGCAAAGTTTATTTCACTTCTTATTCTAACACACTTCGACCATGTGGAACCGGTGCCACAACCTTTCATGGTT AATGATACCACTCATTGTCCCAAGGAAGAAAGAAGCACTTCAGCATGCTACAAAGAAGTTCTGTTCAGAAGAAAAGTGAC TTCTTAGTTTCTTTAATTGTGTAGAGTTGTAGAATGTTAAGTTGTAATTTTTCAGATCTTGGTAAATAATGAGATGTAGT TGTTTAATGAGTTTGTACCTATTGTTTTACTAATTCTCGGTCGTTTATTCAGACATTCCTTTC
CDS sequence (LotjaGi5g1v0044100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTCTGTGAGGATGAGCTTTTTCAAATCCTTTCATGGCTTCCAGCTAAATCATTGTGCAAGTTCAAGAGTGCTTG TGGGTGGACCTTAAATTTCAGCAAAGAGACATATTTTTGCATGAAGAATGCACAAAATATGTTGTTACAAGATGATACTG GCTTCTTCATACAACAAGACAATGGTCAGAGGTTTAGTGGAAGAATTGAAAGCCACTCGTTCAATGATGAGGAATTATTA TCTTCTGGGGTACCTCAAGATTTTCTAAGTTTCTTGGCGAAATCCGCGAAAATCATCTCATCTAGCAATGGACTAGCCTT GTGTCGAAGCACGTCGAGAGAGAGTGAAGTTGAGCTTTTTCTGTGCAATCCTGTGATGAAAACATGGCTCCCAGTTGCTA CCCCTGCCAGTGTTCATGAATTCCCTGATGTTGCTGTGGATGTTGTGTTTCAGTGCATGAACGATAATCTTGATGTGGAT GACTATAGAATAACCTTGATTGACGGCCCCCTTGAATGGTCATCATATCGTGATTTGAAAGTGTATTCTCCAAAGGAAGG TGTGTGGGAAGCCATGGAGAAAAGCTTCTTCATTGGTAGCAGGAACATGAGATTTGATATGCCGGTGACTCTGAATAATT CTCTCCACATCATATCTGATAGTTCTCCATCTTTTACCAAGTCAAGTCCTTTCTTTAGGCCATATATAATGGCTTACAAT TATGAGAGTGGTGAATCAACAATGTTGAGGCTCCCAAGAGATGCAAGAAGGGGTTCTCATGATGATAGTTGCAACATGGG AATTTTTGAATGGGGGAAGGCGAAGAGTTCAGATCATTCAATTTGTTTAGTGAGGTACCGGAAGCGCGTCTTTACCGTAT GGATCTTGGAAGACTACAAGTCAACTTTATGGAGAAGGGTTTTGAAAATAAGGGTGAAAGCGATGGGGTTGAAGGAGGAA GATCCAAGAGTTGAAGGGTTTGCCGTTATGAATGGTGATTGCTTGATTTTCGCCACAGAGAAAAAGGTTTATGCATATAA TTTGTCTGGTGGCAAACATCTTCAGAGGGCAAAAGAAATATGTGAGCATGGATTGAGAGGCAAAGTTTATTTCACTTCTT ATTCTAACACACTTCGACCATGTGGAACCGGTGCCACAACCTTTCATGGTTAA
Protein sequence (LotjaGi5g1v0044100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFCEDELFQILSWLPAKSLCKFKSACGWTLNFSKETYFCMKNAQNMLLQDDTGFFIQQDNGQRFSGRIESHSFNDEELL SSGVPQDFLSFLAKSAKIISSSNGLALCRSTSRESEVELFLCNPVMKTWLPVATPASVHEFPDVAVDVVFQCMNDNLDVD DYRITLIDGPLEWSSYRDLKVYSPKEGVWEAMEKSFFIGSRNMRFDMPVTLNNSLHIISDSSPSFTKSSPFFRPYIMAYN YESGESTMLRLPRDARRGSHDDSCNMGIFEWGKAKSSDHSICLVRYRKRVFTVWILEDYKSTLWRRVLKIRVKAMGLKEE DPRVEGFAVMNGDCLIFATEKKVYAYNLSGGKHLQRAKEICEHGLRGKVYFTSYSNTLRPCGTGATTFHG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 387 | 384 | 6.0E-97 | – | |
| PANTHER | 4 | 387 | 384 | 6.0E-97 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0044100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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