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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0048600 |
| Transcript ID | LotjaGi5g1v0048600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1677 family protein; TAIR: AT1G72510.1 DUF1677 family protein (DUF1677); Swiss-Prot: sp|A9B8B2|CLPX_HERA2 ATP-dependent Clp protease ATP-binding subunit ClpX; TrEMBL-Plants: tr|V7CUQ9|V7CUQ9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0048600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8131949..8134571) extracted from Lotus japonicus Gifu genome v1.2.
CAAATCCCCCAATCATTAAAATTTCTCCTTTTTGCGTAACCTTTTCCAGCACAACAAAGATCCGCATCAATATATACCTA TGTGGCAATGTCCATTCTCCTCACTGAGCAACGAGGACAAGAGTTAGAGATAGACACGCACATGAGAAGAAGAGAAGTCA CAACCAAACACAGATCCAGCAGCACTCAAAACATCAGCAATTGATTCCATCCCCTGTTCGATTCACTTCACAGAGATAAA GAACAAGAGAGCCCTTCAAGGCTCTGGGATGTACCATACACCATTCAGGGCTCTATTATTCGGTGGTGGCGAGAAAGTTC AAGTTCAAGCTCAAGTTCAAGAGATTGGGTGGGAGAAGGAGCGATAAACACACATATATTCCAGTTTCAGATCCTTCTAT TGTCTTTGTGGATCTTCCAAGATTCAATTCTTCTCCTCAATTTCTGTTACATGGTAAAAAAATCACAATATCAATCATCA CTTTTACTAAGTCCATAATATGTCAAAATCTCTAGTATTAGATTGCACAAGTGAATATAAACATGTTTCGATATATGGTA GAAAACCACGGTGAAGTTAAAATCATGGTAGACAACAGATACTTCTATGATTTTTGCGGCGTCTTTGTGTTTTTTACTGT GTATCCAAATATGCACAATTTGTTGGGTAGATGTCATAAATTTTCTTGCGAAGGTCTTACATTGCTATGGGGTTACTTTC AGGTCACAATCTTTGATATCATGAAAAATTATAATTGCCATTTCAGATCTCTAAAATCATTAATAAATTGATATTGAGAT ACTAGTGATTTAAAGCCATGTTAGTATTAGTACTATTCTTTGTTGTGTAACAATTTCATTGTTCTAATGCTGTTTTTCAA TGTGTAGTTCTTGGGTGCAGAAGAAAGAAAGGTGGACATGGCTGCTGCGAAGGCTGGGAAAGAAGCGAAGTGTGTTGAGG AGGTAGAGGGTGTCGTTTCCTCGGTGAAGTGCTGCTGCTGCGGGCTGGTGGAGGAGTGCACGCAGGCCTACATTGCTCGG GTAAAGGAGCGGTTTGGCGGCCGTTGGATTTGCGGGCTGTGCGCGGAGGCGGTGAAGGAAGAGAGGGTGAGGGAGAAGAA GATGATCAGCATGGATGAAGCTCTGGACCGACACATCGGGTTCTGCCAAGAGTTTCGTTACTCGGCTCCTAATGAAGAGG ATCTTGTACATGCTGTGAAGCAGATCCTCTTCCGCAGTCTTGATTCTCCTAGGAAGGAACGTTTCAGTTGTAGACCTCTT GGTAGATCTCAGAGTTGCTTCTCAACTATGCAAGTAACTACACCACCACCAGAGTCACCCTCAGAGTGAGGGATTCGGCT TAACTGCAGTCAATTTTTGGTGCGGTCACTGCAGTTGAAGGATATTAGCTGTGAGTTGAAGAACAGATGGTTCAGCTTTG AGTTTAACAACTCAAATGTAGATCATGTTCTCTAAATCTGAGCTGTCTGATTTTCAACAAATGGCCGGCATTTTTTAACT GCAGTGACTGTAGCGAAAATTGAGAGGGATAAATGACCATTGTTTCAGGAGTTTATTTTTGTGCTGAGTACGGTTTCTAT AGCTGCAATCAATCAAATATCAAAATGTGTTAAAACAGTAATAAGAAAATAAAGTTTATTACTAAGGTTGTTTTATTATC ATTCTGATTTGATTGATTGTGATTATAGATGCTGTATTCATACAGGAATTACTCAGATTTATTGGGGGTACTAGTTAGAC AACCCCCCTTAAAAATAAACAGTGAATAATTGCAGGCATTTTGGCCTCAGCTGTTGTGTCCTGAGTTAATTATTTTGTTG TCTTGTGTTCTGTTTGATCTGGTAGGTGTTTTGTTTTTAGGATTGTGCTGTATGTCAAGATATTTTGTTAGTCATTTGTT TGGTCATTTGTTTGGGCATTTGTGATTGAGTGGATGATTGTCGACAGAAGTTTTCCTTCCTTGTCCTTGACCTCAATCTG AATGTCAATTGGTTGTAAATATCCTATTCATTACTAGCAATGGAATAGTAGTTTCTTTTTGGTTGGGCCAAACTCAGATT ATGAAATTTTGTTTGAGGCCTTCTCTTTTTCCATGCGCAATATGTTTAGTATGTGTTTGGATACAAGTTATTGAGAAATG CCGGTTTACTTTTTATCTCAAAATGAGTGATAACAAATGTTTGCATTGCCACAAGATATTCAAAGATAGGCAAATTATTT TGTCTCTTGTTTCATAATGTCTGGGCTGCAAACCAGCACCTTTTTTTTATTGCCTGTTATTCCTTCTCACCATTTATTAT TGAACAGGTTCTAGTGTTTTGCAGTGATTCTTAATGGGATAGTGACAGATTACTCACTCTTCAGAAAGTGGGATTGTGTA TATATCCATCCTAAGGTTTCCTGCTGGTTTAGGAAGATTCACAAGCTATGGTTTATAATTATAATGTCAAACTAGGCTTA GGCTAATATATTAATGGAGTTTGATAGATATTAGTTATATAGGACTCTTCAACAGAAAATGTCACTGTGATTTATGCCAA CAAAATTAATTTCAAGAGATATGTTTTGTTATAAAAAGTTCAGTTTAATTCCGTTTCGACCAT
CDS sequence (LotjaGi5g1v0048600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTTGGGTGCAGAAGAAAGAAAGGTGGACATGGCTGCTGCGAAGGCTGGGAAAGAAGCGAAGTGTGTTGAGGAGGT AGAGGGTGTCGTTTCCTCGGTGAAGTGCTGCTGCTGCGGGCTGGTGGAGGAGTGCACGCAGGCCTACATTGCTCGGGTAA AGGAGCGGTTTGGCGGCCGTTGGATTTGCGGGCTGTGCGCGGAGGCGGTGAAGGAAGAGAGGGTGAGGGAGAAGAAGATG ATCAGCATGGATGAAGCTCTGGACCGACACATCGGGTTCTGCCAAGAGTTTCGTTACTCGGCTCCTAATGAAGAGGATCT TGTACATGCTGTGAAGCAGATCCTCTTCCGCAGTCTTGATTCTCCTAGGAAGGAACGTTTCAGTTGTAGACCTCTTGGTA GATCTCAGAGTTGCTTCTCAACTATGCAAGTAACTACACCACCACCAGAGTCACCCTCAGAGTGA
Protein sequence (LotjaGi5g1v0048600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLGAEERKVDMAAAKAGKEAKCVEEVEGVVSSVKCCCCGLVEECTQAYIARVKERFGGRWICGLCAEAVKEERVREKKM ISMDEALDRHIGFCQEFRYSAPNEEDLVHAVKQILFRSLDSPRKERFSCRPLGRSQSCFSTMQVTTPPPESPSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 147 | 129 | 3.2E-66 | – | |
| PANTHER | 19 | 147 | 129 | 3.2E-66 | ||
| Pfam | 31 | 117 | 87 | 3.7E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0048600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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