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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0050300 |
| Transcript ID | LotjaGi5g1v0050300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Constans; TAIR: AT5G24930.1 zinc finger CONSTANS-like protein; Swiss-Prot: sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4; TrEMBL-Plants: tr|Q52ZI7|Q52ZI7_PEA CONSTANS-LIKE b; Found in the gene: LotjaGi5g1v0050300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8459400..8462096) extracted from Lotus japonicus Gifu genome v1.2.
TGGAGTTGCTCTAAACTCTTGTTAAAGTTTATCAATCCAAATTAGAGGTTCCTTCCTAATAATTGTGCTCTGCTTTATGC TTCTATATCCTTTCCAGCGTTTTCAACTTTTTATGCTTAAAGTCTCCTTCTCTGAATTCTCTCTGCAGACTGTAGTAAAG TGTTTTGGCTAAGGCTCAACCACGTGTCATTCCTCAATTGGCCACTCCCTAGATCGCCCCTACCCCACCACACACATTCA CACTTAACCACACAAACCCACAGCCTCTTCCATCCATCAACAACCTTCACCAAAAACCAAACGCCAACAGTAACATTCAT TCACCCTCTCACCCACCCCCAAGCTTTCTTCTTACAATGGCCATCACAACCACGACTAAGATGTGCGATTCTTGCAAATC CTCACCTGCCACCCTGTTCTGCCGCGCTGACTCAGCCTTCCTCTGCTTCCCCTGCGACTCCACCATCCACGCCGCCAACA AGCTCGCCTCCCGCCACCCTCGCGTCCCTCTCTGCGAGGTCTGCGAGCAAGCCCCCGCCTCCGTCACCTGCAAGGCTGAC GCCGCTTCCCTCTGCGTCTCCTGTGACCACGACATCCACTCCGCCAACCCCCTCGCCCGCCGCCACGAACGCGTCCCCAT CGCGCCGTTCCACCACCACAACCACAACACCACCTACCTCTCCGACGCCGATGCTGCTGACGTCACCACCGATGAAGCTG AAGCCGCTTCCTGGCTACTTCCTACCCCTTCCAACCCCAAAGGCCCCGATCTCAACTCCTCTCACTACTCCTACTCCGAA ATCGACACCGTCGAGCTCGATTTCACCAAAATTGACTCGCCAGAGCATAACAGCGCCGCCACCGCCGACGGAGTCGTTCC GGTGCAATCACAGAGCAAGATCACTACAATCGAGCACCACTACGACAACGACGCTAACAACCAAATCGATTTCCCTACCT CTAAGCCTTTCGCTCACAACTACAACGCTAAATCGCACTACCACGCTGTAAGATTAACTAAGAACAGGAAGATCATGTTC ATGGTTCAACGTACCTCTTTGATTTGAAATCTGAACGAGTTTTTTTGTGTTTTCAGGTGTCGTCGCCGTCGATGGAGGTT GGTGTTGTGCCGGACGGGAACGCGATGTCGGAGATTTCGTACTGTTGCTATGGAACGCCGGCGCCGGCGGTGGAGGCGGT GCAATTCTCGGCGGCGGATAGGGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGGAAGAATCGAAGGTTCGAGAAGACCA TTCGCTACGCTTCGAGGAAAGCTTATGCGGAAACTAGGCCCAGGATCAAAGGAAGGTTCGCGAAACGCTCCGATGTGAAT GTGAATCTTCTCACGGAGGAGGACCCTTTCTCTGGATACGGCGTCGTTCCCACATGCTGAATGAAAGCGGTTGTGTACGT TTATATGTCTGGAGTTCGATCCTCGCCCATGAGAATGAAAGTCGTCGGTCATTTACTGTGAGCATCCGCGTGCGGTGAGG GAATTAGTCATTGCGTTTGACGTGAATGACACTCAAAAAAAAAAAAATAGTTGTAGCCTATATAGGGTTCATATATACTA TTAACCCTTGAATGACTGATTTATCTTACAATGTAGTGTATGTTTTTCTGTGTAACCTTTTGAGGTTTTTCCCCAGTTTT TGAATATCACCTGCTGTATATATTTTTTGTTGGGAGTGGAGGCAGAAGCTATGTAGTGTGTGTTTCTTGAGTGATAGTGA ATGCAAATAATCAGTGAATTTTGGTGCTCATGACTTGCAGCTTTACTCTATTGCGTTTGGGTTTGAATCCAACTTTTTTG CTTTTGTTGAGTCTTGATCTTTGTAGAATTGTTAGATTGGCAAGATGTGTTATCGTTGTTGTTTGTCCAAAGAGAAGCAT TGAGTGTAGGGAAGGAGAAGCACTTTGCTTCGTAATTCTAAAGAGGTTGATTGGCTTTTGGATTAGTGTATCTTAATCTG TAATACCATTGGTGCATCAACGTGCATGGTGTGTGATTAAATTAGTATTATGCAATAGAAGGTCATATTTAAATGATAAA AAAAGTGGGTACTTGGGTGCCCATAAATTCAAACGAGGGTAGGCTACAAGAGTGAGTTGTACCAATAATATATAAACACT TAATGTGATAAGTGCTCACTAGATCATTTTTTAGACTATTTACGTTATGACCCTAGATCAATTTTAGCTTACTAAATATG TTCTCATCCTTTTTAATAATTATGTATTTTAAACTTTACCACTGTTAATATTACTTCCATCAAATTTGTATTATGGGCTA TATGAGTTTGTCTACCCCAATTCAAAATGAAGAATCTCTCTGATTTCCACCCTTCAGTTGCTACCACCACAAAATGTCTT TTTTTCACCCTTTTTTTTGCATAAGAATATGTTCTGCAACTGCATGATGAGTGTTTTCATCAATACTCCAAAGCCTCTAG AAATTTTTGTTTTACCATATATAATTCTCTCACAAGAACAAAAATAGCTAGCTTGTCCCAGTATAACGGATTTGGGATTG GGGCTCGTGACACCATGACGCCAACGCCAATTTGTGATAAACATGATAAAAAAAATCATCTTTTCATTATAAACCGAATC ACAATCAGTCTTATTATATGAATACACCACATGAATTTATTTCAGCCACAAATTTTT
CDS sequence (LotjaGi5g1v0050300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATCACAACCACGACTAAGATGTGCGATTCTTGCAAATCCTCACCTGCCACCCTGTTCTGCCGCGCTGACTCAGC CTTCCTCTGCTTCCCCTGCGACTCCACCATCCACGCCGCCAACAAGCTCGCCTCCCGCCACCCTCGCGTCCCTCTCTGCG AGGTCTGCGAGCAAGCCCCCGCCTCCGTCACCTGCAAGGCTGACGCCGCTTCCCTCTGCGTCTCCTGTGACCACGACATC CACTCCGCCAACCCCCTCGCCCGCCGCCACGAACGCGTCCCCATCGCGCCGTTCCACCACCACAACCACAACACCACCTA CCTCTCCGACGCCGATGCTGCTGACGTCACCACCGATGAAGCTGAAGCCGCTTCCTGGCTACTTCCTACCCCTTCCAACC CCAAAGGCCCCGATCTCAACTCCTCTCACTACTCCTACTCCGAAATCGACACCGTCGAGCTCGATTTCACCAAAATTGAC TCGCCAGAGCATAACAGCGCCGCCACCGCCGACGGAGTCGTTCCGGTGCAATCACAGAGCAAGATCACTACAATCGAGCA CCACTACGACAACGACGCTAACAACCAAATCGATTTCCCTACCTCTAAGCCTTTCGCTCACAACTACAACGCTAAATCGC ACTACCACGCTGTGTCGTCGCCGTCGATGGAGGTTGGTGTTGTGCCGGACGGGAACGCGATGTCGGAGATTTCGTACTGT TGCTATGGAACGCCGGCGCCGGCGGTGGAGGCGGTGCAATTCTCGGCGGCGGATAGGGAAGCTAGGGTTTTGAGGTACAG AGAGAAGAGGAAGAATCGAAGGTTCGAGAAGACCATTCGCTACGCTTCGAGGAAAGCTTATGCGGAAACTAGGCCCAGGA TCAAAGGAAGGTTCGCGAAACGCTCCGATGTGAATGTGAATCTTCTCACGGAGGAGGACCCTTTCTCTGGATACGGCGTC GTTCCCACATGCTGA
Protein sequence (LotjaGi5g1v0050300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAITTTTKMCDSCKSSPATLFCRADSAFLCFPCDSTIHAANKLASRHPRVPLCEVCEQAPASVTCKADAASLCVSCDHDI HSANPLARRHERVPIAPFHHHNHNTTYLSDADAADVTTDEAEAASWLLPTPSNPKGPDLNSSHYSYSEIDTVELDFTKID SPEHNSAATADGVVPVQSQSKITTIEHHYDNDANNQIDFPTSKPFAHNYNAKSHYHAVSSPSMEVGVVPDGNAMSEISYC CYGTPAPAVEAVQFSAADREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDVNVNLLTEEDPFSGYGV VPTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 39 | 39 | - | – | |
| ProSiteProfiles | 5 | 52 | 48 | 11.974 | ||
| SMART | 5 | 52 | 48 | 2.4E-14 | ||
| PANTHER | 7 | 324 | 318 | 2.2E-128 | – | |
| PANTHER | 7 | 324 | 318 | 2.2E-128 | – | |
| Pfam | 8 | 52 | 45 | 2.6E-7 | ||
| CDD | 9 | 52 | 44 | 1.30666E-9 | ||
| ProSiteProfiles | 48 | 95 | 48 | 10.694 | ||
| Pfam | 50 | 95 | 46 | 4.8E-7 | ||
| CDD | 51 | 95 | 45 | 3.09814E-8 | ||
| SMART | 53 | 95 | 43 | 2.4E-9 | ||
| Pfam | 259 | 301 | 43 | 3.0E-17 | ||
| ProSiteProfiles | 259 | 301 | 43 | 16.797 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0050300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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