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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0051600 |
| Transcript ID | LotjaGi5g1v0051600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chorismate mutase; TAIR: AT5G10870.1 chorismate mutase 2; Swiss-Prot: sp|Q9S7H4|CM2_ARATH Chorismate mutase 2; TrEMBL-Plants: tr|I3SNI5|I3SNI5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0051600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8703492..8706242) extracted from Lotus japonicus Gifu genome v1.2.
AGATACAGAATGGCCCAAGCAGAATCGAATCCTGGAAATGTGTACACGCTGGAGTCTGTGAGGAAGGGTCTGGTTAGGCA AGAAGATACCATTGTTTATGGCCTCATTGATAGAGCTAGGTTCCCTTTGAATTCTCATACCTATGAGGAAAACTACTCTA AAATCCCGGGTTTTTGTGGCTCGTTGGTCGAATTTGTTGTTCAGAACACTGAGGCCGTTCAAGCTAAGGTAAATAACTAC TGCTATTAGTCTATACATTTTCATAGCTTGTTTTGATTTGGGTTGCCAAGTCATGTTATTTTAATATTGTGTGGTGTTTA TTCTTAAGCAAAATCTCGGGTTTGAGTGTCTTGTCTTGTGTAAGGAAAAAAATCTCCGCCGCGAGAGCTAGTCCCACAAG GATCTGGCCTCCCATTGAGATAACTGTGTTACATAAAAATAAAAATTGTGGTATTTGCCTTGTCCCCTGGGTTTTACACT GCGGTTGAGCAGCGGTCCTTAACATTGTGGATAAGTTGTATGCATTTGTGGGAGCTCGAAAAACCTTAATATTGTTGTTG CTAACTGCAATTTTGAAACCATATCTGCAACTTCAATGTCAGGGACTGCACATTTGTGTCTTGTTTTAAATGAATTGGGC AGATTATTAAGATTAAGGGTGTAAAATGGATATGAAAAGGAGGGATGTTATCAAATATGCTGATTGGTAATTTAGCTAAC AATCTAGCTTCACATACTTCTGAGTAATAAATACACATTGGGAATATTGGATTTTGTTTGTTTTTAAAAGGAAGTTTGAG GTGGAGTAAAAGGCGATATTCTAAGCCCTTTGCAAAATGCATAACTTGTTCTGACTCTTAGGCTCTTGGGTGTTGAAATG AGGGCTAACTTTGATAAGGTGGAGCACATACTAATTTAATGACATGAGATGGAACTTCTCTGCAACATTTGCAAGGTTCA GTTCATAATTTTGTGCTTCTGTTATTACTTACTGACCAAGTTTCTTCACCTGGGGTAAATGGATTCATCCAATCAAACAT GTATTATATCTCTGCTAATCGCAATGAGTGGTTCTTATCTGCTATGTGTCGTGTTATTGCATTTGAAAAAATGTTTAATA AAAATAATATGGTATATTACAGGCTGGAAGGTACCAAAACCCTGAAGAAAATGCCTTCTTCCCAGAACATTTTCCATTAT CAATTGTGCCATCGTACCCCTTCACACAGGTAGCTCACCAAGACTCAACAACGACTTCCAATTTCCATAGTTCATGTAAC TTACAATAAAAATGATTAGTTCTATCATTCATCCTTCTTTAGATTTTGCATCCTGGAGCCGCTTCGATTAACATAAACAA GTCCATTTGGAAAAAGTACTTTGATGAGTTGCTTCCAATTTTGGTTGCTTCGGGTGATGATGGCAACTATGCACAAACTG CAGCTAGCGATCTTTCATTATTGCAGGTATGTTTTTTTTTCCTGAAACTTCATTTGGGAGTATGGTTATGGATGAATTTA GGTAGAGAAATCTTTACAAACAATAACCAATTTAAATTTTGTCAAAATCAGTCTTCAGTTATCATTTGTCAATGTATTTT AGTGCAACTCATGTGAGATTTTTTAACAGTGGCCTAGAGGCTAAAAACTAGTGTTGATTCTGATTTATGCAAATCATCTT GTAAAATATCTGCAGGCCATCTCCAGAAGGATTCATTATGGAAAGTTTGTAGCTGAGGTGAAATTCAGGGAATCTCCTCA AGATTACGAGCCTTTAATACGAGCTAAGGTAAATATTTGTGCAGATTGCTAAGTGTTAGCAAATTTAGGTCGTTTGGAAA AGCTTATTTGAGTTTATCTTATAGCATAAGTGATATGTAAGTGTTTGAGAGAGCTTATGGAAATACTTTATGGCCTACAT ATAAGCTATTTGAGCTTATTTTCATAAGCTGTTTAGATTAGCTTGAGCAAGTGTTTTTGCCTAGCTACCTATAACATAGT TTGAGCTTTTCTCAATAAGCTTCTCATATTAGGTCACGATTAAGTCCTTATGCGTAAGGACTTATTTCCATAAGCTCTTT ATTAACTTGGTTACTCAAACTTGCTAAGTTCCATAATAAATATCTGTTTTTACAACACAATTCATTTGGTATACATTATC ATCAAGATAATATACCATGATTTAATGGTTAGATTACTTGTCTTCAAACTTATACCTGATATCACATGCATTTGGGTAAA CAACTTAATTAAGTGTTTATAGCAATAACTAGTTATCGCATAAGCGCTTATTCATAAACTTATTGATATGTTAGGTAAAC ATACATGCTTTTTCATAAACTAATATGAGCAGCTTATCAATAGGTCATAAGTTATTTATGTAAGTTCTCTCAAACATTTA CATAAGTGTTTATGCTACAAGGCAAACTCAAATAAGCTCTTACAAACAGGCACAATCTTAAATGTTTTTATGCAAATGGA GCTCACATCTATAATGGTACCCTCTTGGATTTTGCAGGACAGAGAAGGGTTGATGAAATTATTGACATTTGAGAGTGTTG AAGAGATGGTGAGAAAGAGAGTTGAAAAGAAGGCCATGGTGTTCGGGCAGGACGTAGGCCTAAACGGTGATGATGAAAAG AAAGTAAAACGCAAGTTTGATCCATCAGTGGCTTCTCGCTCGTATCAGAAGTGGATAATACCTCTCACCAAGGAGGTTCA GGTTGAGTACCTCTTGCGCCGTCTAGATTGA
CDS sequence (LotjaGi5g1v0051600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCAAGCAGAATCGAATCCTGGAAATGTGTACACGCTGGAGTCTGTGAGGAAGGGTCTGGTTAGGCAAGAAGATAC CATTGTTTATGGCCTCATTGATAGAGCTAGGTTCCCTTTGAATTCTCATACCTATGAGGAAAACTACTCTAAAATCCCGG GTTTTTGTGGCTCGTTGGTCGAATTTGTTGTTCAGAACACTGAGGCCGTTCAAGCTAAGGCTGGAAGGTACCAAAACCCT GAAGAAAATGCCTTCTTCCCAGAACATTTTCCATTATCAATTGTGCCATCGTACCCCTTCACACAGATTTTGCATCCTGG AGCCGCTTCGATTAACATAAACAAGTCCATTTGGAAAAAGTACTTTGATGAGTTGCTTCCAATTTTGGTTGCTTCGGGTG ATGATGGCAACTATGCACAAACTGCAGCTAGCGATCTTTCATTATTGCAGGCCATCTCCAGAAGGATTCATTATGGAAAG TTTGTAGCTGAGGTGAAATTCAGGGAATCTCCTCAAGATTACGAGCCTTTAATACGAGCTAAGGACAGAGAAGGGTTGAT GAAATTATTGACATTTGAGAGTGTTGAAGAGATGGTGAGAAAGAGAGTTGAAAAGAAGGCCATGGTGTTCGGGCAGGACG TAGGCCTAAACGGTGATGATGAAAAGAAAGTAAAACGCAAGTTTGATCCATCAGTGGCTTCTCGCTCGTATCAGAAGTGG ATAATACCTCTCACCAAGGAGGTTCAGGTTGAGTACCTCTTGCGCCGTCTAGATTGA
Protein sequence (LotjaGi5g1v0051600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQAESNPGNVYTLESVRKGLVRQEDTIVYGLIDRARFPLNSHTYEENYSKIPGFCGSLVEFVVQNTEAVQAKAGRYQNP EENAFFPEHFPLSIVPSYPFTQILHPGAASININKSIWKKYFDELLPILVASGDDGNYAQTAASDLSLLQAISRRIHYGK FVAEVKFRESPQDYEPLIRAKDREGLMKLLTFESVEEMVRKRVEKKAMVFGQDVGLNGDDEKKVKRKFDPSVASRSYQKW IIPLTKEVQVEYLLRRLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 258 | 258 | 2.7E-102 | ||
| Gene3D | 4 | 258 | 255 | 2.1E-99 | ||
| ProSiteProfiles | 5 | 258 | 254 | 85.08 | ||
| SUPERFAMILY | 7 | 258 | 252 | 1.14E-89 | ||
| PANTHER | 9 | 258 | 250 | 1.2E-131 | – | |
| PANTHER | 9 | 258 | 250 | 1.2E-131 | ||
| TIGRFAM | 13 | 258 | 246 | 8.0E-84 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chorismate mutase activity | Catalysis of the reaction: chorismate = prephenate. | ||
| Biological process | Aromatic amino acid family biosynthetic process | The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). | ||
| Biological process | Chorismate metabolic process | The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid. |
Expression pattern of LotjaGi5g1v0051600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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