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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0056300 |
| Transcript ID | LotjaGi5g1v0056300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aberrant root formation protein 4; TAIR: AT5G11030.6 aberrant root formation protein; Swiss-Prot: sp|Q84VX3|ALF4_ARATH Aberrant root formation protein 4; TrEMBL-Plants: tr|A0A151RW33|A0A151RW33_CAJCA Aberrant root formation protein 4; Found in the gene: LotjaGi5g1v0056300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9617305..9624126) extracted from Lotus japonicus Gifu genome v1.2.
AACAAAGAACACATGATTAAAATGAACCCAAACAAGTTGGAGACGAGAGACGCAGCGCGAACCTGTTGGAGCGAGACGAC GGCGAGTGTTTGGCGTGGCGGCCACCGTCGACGGCGAGGGTGTTGTTGGTGTTCCAACCTCCGTTCTTTAGCAAATCACT CCCATGTCGGTAGCTGTAGAGGGCGAAGCTGTGTCTTTTCAAGCTTCTGAAGCTCGTAATGATGTTCGTAGAATTCTTGA ATCATACTCCAAAGTAAGACCAATTTTTTCTCCAGTAAACTTTGTATTTTGCATTGCAATAAACTTTGTATTTTGAATTG CAATTTTTTGCTCATAATGATGTATAGTTTTATCATTTTGAATGCTAAATGATGCTTACAACTTTGATTGCTGATGATTA ATGGTTTCAATAGTAAAAGAAAATATAATTTGCTTGTTAGCATAATGTTGACAGTATATTGGTTTTGTACTTGGTAGTTG GCTGAAGCTGGAGATTTTAATGACTCTGAAAACACCATCTTAGAGCTTGTCAAATTCCTTGATTCTTTATCGGATACTAC TCTTTCGGAACCAGACGATGAACGTGCGGAGAACAATGCATATGGGGCTCTGTTCGAGATCCATCGATACATTTCTTCTC CTTCTCTTCATCAGGTGAGCTAACTTCTGGATTTCAGTCATTTTTCACACTAGGGTTTTTTACTGCTTCTGTAATATAGA CTTAGAAAATTGAAATCAAATAACATAGAATCATGTCTATAGGTGGCATATATTTGTAATTTATACAGTCCACAACCTTG TATGGATCCTTAAATAGTACTATAGGAGATTAATAATTTCACACTATAATCATATTATTGTTTGGATCATGCCTTCTTTC AAGCTCACGGTATAATGCAAGTTCTTCTAAAGAGTTTGTGTGTGTAGAGAGTGACTAAGGTCTAAGAGTGACTTTTTTAT TATTTGGTGATGTGGCAGGAAGTTGTTGATGCTCTTTCCTTTGAACTGCCAAAAGCTGTTTCTAAGTTCGGGAGCATTTC AAGTAGACTTTTGGACATGGCAATTAGCATCATCGATCAGTTAATAGTGAAGTGTGGTCCAAGGGATATGCTTTCAATTC TCTGTAATGTGAGTTTGTGTTGTTCTTTACCATTAAATGCATACTTCAATCCATCTAAGATTTATGTGACATCTCATTAG TCCCTGATTGATTAGAAATATTGAATTGGTCCTGCTGATAATTGAATTCCATCAGTTTCTTCCCTTTAGGATTGGTTTGA TTTCGCTGTAAGAACCATTTTGATGGTAAATTTACAATGATGGACTGACTTTTTGTTTTTTTAAATGGACCACTAACCTG ATAACACATATTTGAAGGACCAACATGGACATTTGCTGCTTTAAATAGATGCTGCTTGCAGTTTATATCTTTCAATATCT TCTTGCTTATTGCGTAGGTAGAGTTGAAGTAGGTTAGTGGAGTGTAATTTTGCCTTTAAAGTGTATTTACAAAAGAATTA TTGAATGAATCTTAATGTAGAATCCAATTAATGTGTCAATAATGCTGAAGGCACTTGATAAGAAGGTACCCTAATAACCT CCATGTTTACAAATGTAACTACATCTTGTTTTGTGATGTATATCCTCGGCTTGAGATTAATTTCCTTCCACTTTTATGAC AGCCCATCACATAATTCTGACACCTCCTATTCACCTGTATTTCTTGCTTCCTGTTTATTAAATTTTATTGTCTTATCTAA CTCCGAAATATTCATTTCCTGACCTCTGGCCATAAATACCAAAAAATAAAATTTTCGCATAATCATATCATAGTTTCCTT GTGAAGAAATAAAGGACAGTGTCACCGTGACATTTAATTTTATTTACTTTTGGTTAATATCTTGATCCTATGCTTCTCTT AATTTAATTGAAACAGACATTAGGATACTCAAGTAAGATGACCAAGCCTGCCTGTTACATTGTCTCTCCTTTATCGGGGC TCTCAAAGGGTAATTTACAGTAAACTTTTCAATTACTGGATATAATATAAAACTGTAACCTCTGTTCGACTAAAACAAGT TGGCAGCAAGTAACTTGCTTATTCCCTTCTAGTGTAGGGATTTAAATGATTATGTTCTTTTCTTGTTTCTTTTAGCGCAT GAAACTCATGTCTGGATACATATTAAAAACACGCTTTTGGTTGTCTTGAACTTGAATCTTGGTTGCTCTGGGCTTAGTGT AAAGAGAACCCATTCTATCTGGCCTCAACAATGCAGATTCAGTTTGATGTGCACTGTCAAGTAGCTACAAGTTTATGATT ATATTATATTTATTTTGAGAAAATCAAATACAATATCAATTAAGTTTTACTTAGTTTTTTGAGATTTATTAAAAGTATTT ATTATGTTTTCACCAACCTTACTGGCTAAGCAGATCCTAGGATCAGTTTCAAATAGATATTTCAAGAGGGACAGATCCAG GCTATTAAAGTTGGTTAACATGCCTGAATGAAGGAGTAAAAGCAGAGAAGCAATTTCTTACAAAATGTTGTGCTTTTGCT TTGGCATTTTAACCGCTCTTATGAAGACAAGTTTTTTGGGTTGAACTAGTGATCTGAATCTTGAGTTTAACAGGACTGAT AGCAAACAAATCTGAGACATTATTTGTTTGGGTAAAGTGGCACCATATGGGTGAGAAAGAATTGTGTCACTATTCTTGGT GAAAAAAACTCTCTAGCTTTTTTATGATGTTGAAGTAGAAATTTGGATGTCTATGTGTGTGTTTGGTTTCAAATCTGGAG AGGCCAAACGTGGATCCAGAAATCCAAAAGCAACTATTTCTTGCTTCTGCAAACGTGGATCGGGGTCAAACGTGGATCTG CAGAAGTTTTCCAAACACACACATATGAGATGAGATAGCACTGATGAATTCTAAACGTTGTCCTTCCAATACAGTGAGGA ATTAACAAATCATATTTTAAGATTCGACTTTTATATCAAATTAAAAAAAGTTCAATCACCCTAGTCTTGTTATCTGCCAG ATTCTTTTGAGCTTTTTTTTTCTCTATAAGAATAAAGACCAATAGAGAATTTGTCTAACCACTTAAGCAACTGTAATACT AGTTTTAAGCTGAGCCTTTGTCTCTAATGCTGCCAATGATTTGAAGCTCCATGCTTGGAATTTTTCATTCATAACCATTT TGCCTTTTTCAGTCTTTATCTCCATTCAGAGGCGTCAGTTTGAGCAAGTTAAAGAAGCTGTTCCTATGATTCTTAATGTA TTGAAGACTGTGTCTTTGGACTCAGATGAAGAAGAACTTGAGGATGTATTTGTCAAAGCTGTTGAGATTGCCAAATCTAT ACATGAAGTTTGCGATAAGTTGGTTTGTCAATTTTAAAACAACTTACCTTTTTCATTGTGAGGACAACTTAAATTACTGA TTTATTTTCAATTTTTTTGCTGACATTTTTTCACCTATACAACAGGAGAGTGTTAAAAAGGAGAAGCTCCAAGAACTTCT TGGTTTGTATGTCCTGCAATGCATGGTAGATGCTTTGTGCTTTATTAAATTTTTATAATTATTCTTCTCTGTATTTGTTT CCCAACTACTTCAGAAAATTTCATTACTTATGGTTATACTACTTTAGTATTATTTAACATGTTACCATGCACTGTTCAGG CTCTTGTTTCAACCAGCATTAGCTATAAAGCTGCCATTTGTGATTCGTTGGTATTACAACTATCACAAATTTCATCATAT TGTGGTTTATCATATCTCTTTCTTTTAACGACTTATGATGTCGAGACTGTGGCTAGCTCCGTTTTCGGAGGTATTACTCT TAGGTCGCTTTGTGTCTGGTCTGCTGTTAATTTATTTCAATGCGGAAGCCCTACTAACAGTATACGGCTTGTTCTCTTTC CCTCAATTACACAGATGATAAAGATGACTGTATGGGTTGTTTATCTTATGTCAGACAAGGTGCTGCCCTTTCAGGTTTGT GTTAGGACAATTATTATAACTGAATCCTTGACTTTTCTTTTTTGTATTTCCTTTTCACTAGCCCATCAAATTCCTCATTT TTCAGTAATTTGGGGGCATGTCTCAGAGGGGGTTGCTCATGCTGCTAAAGAAGATTTGATTGTCATCAAGGATGAACTTT GTAATAACCAGATGAAAAGGTGGCAAGCAATAGGAACATTAAAGCATGTTCTTTTCTTTGTAAATCTTCCATGGGAGTTA AAGAAACATACGATCGACTTCTTGCTTAGCATCACAGATGGAAGTATCTCTAGAAAGTGCAATAATGAACATTCTGAGTT GTTATCTTATATGCCCAATGTTTTCTCAGCTTTGCAGGTTGTTGTTTTCTGCAATTTCTAACTTCAGTTTGTTTTTATTG GTCAATCGTGAACTTTTTCAATGAAGGAGGGAAATTTTGATACATTCTTCTGTTATGGTTACCTTAACCTTTCAGGCTGT TAAAATGGTTATCATGCATGCCCCAGACCCAGAAGTCAGAAAAAAATCCTTTGCTGTGCTAAAAGGAGTGAGTTTCTAAC ACTAGACAATGTATTTTTATGTTGAAGATTTTTTTTATAGCTTGTATGCAATATGAAATGTGCATTTTGTGAAATGGAGA TATATGATGTTGGTTGAATTGAATCCCTTTAATGTCTTGTATTTTTCTTGAGATTTTTATGGTACTGTTCTTGTGTTACC CAAAGGTACTTGCAGATATACCAATTTCTCAAAGGTTTGACATTTTGAAAGCGTTGATTGCAAATACTGACTCTTCCTCC ATGGTAATCCTCTGAATTACAGCTTGTTTAGCTTCGTTCTTTATTTAACTAACTGAAAAAGTAAAATCATCTAATGATGG TGTTACGTTTGTATAGATTGCCATCCTCATTGATCTTGTCCGGAGGGAAATGCACACGGAAATCTGCAGTAGGACATCAG CTGTAAAAAATGTCGCACCGATAAATAATAAAGTACATCCTGACATATCATTTTGGAATCCAAGTGTCCTTGAGTTGGTG GAGTTGGTACTAAGACCTTCACAGGGAGGACCTCCTCCCCTCCCTGAGCAGAGTGATGCGGTATTTTTGCTGTTTCATGT GCTTTTGTAATTTACAAAATCCTGGTATCTTGAGTGTATCTATTGGAAGAAGCATTCTGCATTTTTCTCATCTGGTTTTT GGGTTATGCTCTGACTGAATTATTACCTACAGGTGTTGTCTGCTCTCAACCTATACAGATTTGTATTGATGACAGAATCT TCAGGTATGTAAAATCAATGAAATCTCAAATAAAGCAATAAAAAGTGCCATGAAACAAATATTTCAAAAACTTAAAGCTG TTGGGTGAAGACACATGAGTGATTTTAGATTATATTTAAAACATGCTGATAGGTTGAGTCTTAAAGATAGACATAAGGTG TATGTTAGGCACCAGAATAAGTAAAATGGCCAACTAATTGTTAGTTAGTACTTTTTGTTTTTGTTGTTAGTTAGGATTTA GGAATACTCTTTTAGTATAAATAAAATTAGAGGTGTGCTGCTGAAGTTAGTTTTTGGGAAGTTAGTAGTTGGAGGCACTG ATTCATCAAGAATCAGTTACATCTTTCACATAAACTTAATCTCTCTTTCAATAGATAATACATCTCTCAATTCAGAATCA CATTGATTCTGGGCAATTCTTTTCTTCTGAATCAGTGTTCTTCTTTCTCTCTTGCATTACCAGTTCTAACACATGCCCTC TCACTCGAGCTTATTGGGTTTGAAGCATGGACAATATACAACCTCACCTAGCTTATGCTGAAATTCAAACTTTTTATTAG AATAATGGGTAACAAGGATTGAACTCTAGACCACTTATTCATAGAGGTTATGATACTATGCCATGAATCAAATATCCCAA AGCTTAAGCTATTGGGTGAAGAAGACACATGAATGATTTTATATTATATTTATAACAAAAAGAATTGGGAAAAATTACAT AATAGGACTTCTTATATTAAATTTCAAGGATTTGGAAGATGAAAAACAAGCTTTTGTGTTAATGATCCACTTGAATGACT AGCTGTGTTCCTGAACAGAAACATGTTTACCTAGAATTTTCTTTTGTGAGTGGCCCTGAAAAGTTTGAACTAGTTACATC TTTGTAGTGGTTTAATAATTGGTAGTTGCTAAACATAATCTAAATTAAAGTCTATTTATGAAGGTTTTGCAATTGCTTTT ATAACAGGAAAGACAAACTGCACTGGTGTCCTGTCAAGGAACACTTTGTTGAAGGCCTTCAATGAATGGTTGCTTCCTTT GCGGACCTTAGTGACAGGTATATTGGCAGAGAACAAGAATGATTATGATCAGCTTGCAGTTGACACTTTATGCACAATAA ACCCACTTGAGTTGGTGTTGTACCGGTGCATTGAGCTTGTAGAAGATAAGATAAAGGAAGCCACATAGGCTATCCCACTA GCCAAAACATTTTTGATAGTATATTTTTAGGGTAGAATTGCCAGCAACATATATGTACCACATTTTCAAAACATGATTGT TAGATGAAGTTCATGTTAGTGGTGAGACTTATTTCATAATTGGTGTGCTTTAAATTAATTTTACCAAAAATAGAAAAGGG GACACCCAGGATTTGTCAAATATATTGTGTGTGTTCTTAGTAACACCCTGGATTTTCACTGGCTTGGAACACATGCACAT CATGTGTGTTCCAAGGAGACAACTGGGATATGGTTCATACTAGGGTAAGGTGGGAGAGGATAGGAGAGTGGAATGAGAGG TATGGTAGGGGTAGAAAAGGGG
CDS sequence (LotjaGi5g1v0056300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGTAGCTGTAGAGGGCGAAGCTGTGTCTTTTCAAGCTTCTGAAGCTCGTAATGATGTTCGTAGAATTCTTGAATC ATACTCCAAATTGGCTGAAGCTGGAGATTTTAATGACTCTGAAAACACCATCTTAGAGCTTGTCAAATTCCTTGATTCTT TATCGGATACTACTCTTTCGGAACCAGACGATGAACGTGCGGAGAACAATGCATATGGGGCTCTGTTCGAGATCCATCGA TACATTTCTTCTCCTTCTCTTCATCAGGAAGTTGTTGATGCTCTTTCCTTTGAACTGCCAAAAGCTGTTTCTAAGTTCGG GAGCATTTCAAGTAGACTTTTGGACATGGCAATTAGCATCATCGATCAGTTAATAGTGAAGTGTGGTCCAAGGGATATGC TTTCAATTCTCTGTAATACATTAGGATACTCAAGTAAGATGACCAAGCCTGCCTGTTACATTGTCTCTCCTTTATCGGGG CTCTCAAAGGTCTTTATCTCCATTCAGAGGCGTCAGTTTGAGCAAGTTAAAGAAGCTGTTCCTATGATTCTTAATGTATT GAAGACTGTGTCTTTGGACTCAGATGAAGAAGAACTTGAGGATGTATTTGTCAAAGCTGTTGAGATTGCCAAATCTATAC ATGAAGTTTGCGATAAGTTGGAGAGTGTTAAAAAGGAGAAGCTCCAAGAACTTCTTGGTTTGTATGTCCTGCAATGCATG GCTCTTGTTTCAACCAGCATTAGCTATAAAGCTGCCATTTGTGATTCGTTGGTATTACAACTATCACAAATTTCATCATA TTGTGGTTTATCATATCTCTTTCTTTTAACGACTTATGATGTCGAGACTGTGGCTAGCTCCGTTTTCGGAGATGATAAAG ATGACTGTATGGGTTGTTTATCTTATGTCAGACAAGGTGCTGCCCTTTCAGTAATTTGGGGGCATGTCTCAGAGGGGGTT GCTCATGCTGCTAAAGAAGATTTGATTGTCATCAAGGATGAACTTTGTAATAACCAGATGAAAAGGTGGCAAGCAATAGG AACATTAAAGCATGTTCTTTTCTTTGTAAATCTTCCATGGGAGTTAAAGAAACATACGATCGACTTCTTGCTTAGCATCA CAGATGGAAGTATCTCTAGAAAGTGCAATAATGAACATTCTGAGTTGTTATCTTATATGCCCAATGTTTTCTCAGCTTTG CAGGCTGTTAAAATGGTTATCATGCATGCCCCAGACCCAGAAGTCAGAAAAAAATCCTTTGCTGTGCTAAAAGGAGTACT TGCAGATATACCAATTTCTCAAAGGTTTGACATTTTGAAAGCGTTGATTGCAAATACTGACTCTTCCTCCATGATTGCCA TCCTCATTGATCTTGTCCGGAGGGAAATGCACACGGAAATCTGCAGTAGGACATCAGCTGTAAAAAATGTCGCACCGATA AATAATAAAGTACATCCTGACATATCATTTTGGAATCCAAGTGTCCTTGAGTTGGTGGAGTTGGTACTAAGACCTTCACA GGGAGGACCTCCTCCCCTCCCTGAGCAGAGTGATGCGGTGTTGTCTGCTCTCAACCTATACAGATTTGTATTGATGACAG AATCTTCAGGAAAGACAAACTGCACTGGTGTCCTGTCAAGGAACACTTTGTTGAAGGCCTTCAATGAATGGTTGCTTCCT TTGCGGACCTTAGTGACAGGTATATTGGCAGAGAACAAGAATGATTATGATCAGCTTGCAGTTGACACTTTATGCACAAT AAACCCACTTGAGTTGGTGTTGTACCGGTGCATTGAGCTTGTAGAAGATAAGATAAAGGAAGCCACATAG
Protein sequence (LotjaGi5g1v0056300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVAVEGEAVSFQASEARNDVRRILESYSKLAEAGDFNDSENTILELVKFLDSLSDTTLSEPDDERAENNAYGALFEIHR YISSPSLHQEVVDALSFELPKAVSKFGSISSRLLDMAISIIDQLIVKCGPRDMLSILCNTLGYSSKMTKPACYIVSPLSG LSKVFISIQRRQFEQVKEAVPMILNVLKTVSLDSDEEELEDVFVKAVEIAKSIHEVCDKLESVKKEKLQELLGLYVLQCM ALVSTSISYKAAICDSLVLQLSQISSYCGLSYLFLLTTYDVETVASSVFGDDKDDCMGCLSYVRQGAALSVIWGHVSEGV AHAAKEDLIVIKDELCNNQMKRWQAIGTLKHVLFFVNLPWELKKHTIDFLLSITDGSISRKCNNEHSELLSYMPNVFSAL QAVKMVIMHAPDPEVRKKSFAVLKGVLADIPISQRFDILKALIANTDSSSMIAILIDLVRREMHTEICSRTSAVKNVAPI NNKVHPDISFWNPSVLELVELVLRPSQGGPPPLPEQSDAVLSALNLYRFVLMTESSGKTNCTGVLSRNTLLKAFNEWLLP LRTLVTGILAENKNDYDQLAVDTLCTINPLELVLYRCIELVEDKIKEAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 607 | 595 | 1.7E-165 | ||
| Pfam | 60 | 245 | 186 | 3.9E-9 | ||
| Pfam | 396 | 575 | 180 | 1.2E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0056300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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