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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0057400 |
Transcript ID | LotjaGi5g1v0057400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | NHL domain protein; TAIR: AT5G35090.1 hypothetical protein; Swiss-Prot: sp|P18572|BASI_MOUSE Basigin; TrEMBL-Plants: tr|A0A072VE70|A0A072VE70_MEDTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0057400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9703245..9704021) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCTCATTACACCCCAACTTATATAATTCACAATCCACACTTCACCACCAACAATCACCACCACCACATTCTCCTTTT CATCTCTCAAAAGGGTTTGAGAAAAGCAATAAGGGTATATATTAATTAATTATTATTAATCATGATGAATAATGGGATTC ATAGACAATCATCATTGAGGGAAAAGTTGAAATCTTCAATTTGTTGCTTCACGAGTAGCGTTCATCATGATTCATTAGAG CATCAAGGAGAAAGAATATTCAACAAATTGCACATACCCAGGACGCCCATTTCACCAGCAGGATCATATTCAGGTTCTTC TTCCTCTTTTTGGTTCAAGAAATCACCAACCGGTGCTAGCGAGTTTGGCACGACCCATTCCACGACGCCTCGTGGCAGGA GTCGTGGTATCAGGCACCGCATTGGGCGTAGGCACCACCGTCAGTCACTATCCGCTGACTTCAGCTATGACCCTTCGAGC TACGCCCTCAACTTTGAAAATGAGGAAGGGCACGAGGAATTACCCATTAGAAACTTTAGCTCTCGGTTGCCGGCATCACC GCCATCTTCACCACCCATCAATTACTCCGAAGAACTCCCAAAAGAGATTGTTGGGTATAGCTGAGATATATGTATGTTCA TATTGTAATTTTATTATTTCATTTGTTTTATATTTATGTTGTGTTGTTTTTTCTTAAAAATGAATCAAAGTTTGTAAAGT TTAATGTTAGAAAGTTATATAATCGATGTAAACACAAAGGATGCGTTTCAGATAGGG
CDS sequence (LotjaGi5g1v0057400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAATAATGGGATTCATAGACAATCATCATTGAGGGAAAAGTTGAAATCTTCAATTTGTTGCTTCACGAGTAGCGT TCATCATGATTCATTAGAGCATCAAGGAGAAAGAATATTCAACAAATTGCACATACCCAGGACGCCCATTTCACCAGCAG GATCATATTCAGGTTCTTCTTCCTCTTTTTGGTTCAAGAAATCACCAACCGGTGCTAGCGAGTTTGGCACGACCCATTCC ACGACGCCTCGTGGCAGGAGTCGTGGTATCAGGCACCGCATTGGGCGTAGGCACCACCGTCAGTCACTATCCGCTGACTT CAGCTATGACCCTTCGAGCTACGCCCTCAACTTTGAAAATGAGGAAGGGCACGAGGAATTACCCATTAGAAACTTTAGCT CTCGGTTGCCGGCATCACCGCCATCTTCACCACCCATCAATTACTCCGAAGAACTCCCAAAAGAGATTGTTGGGTATAGC TGA
Protein sequence (LotjaGi5g1v0057400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNNGIHRQSSLREKLKSSICCFTSSVHHDSLEHQGERIFNKLHIPRTPISPAGSYSGSSSSFWFKKSPTGASEFGTTHS TTPRGRSRGIRHRIGRRHHRQSLSADFSYDPSSYALNFENEEGHEELPIRNFSSRLPASPPSSPPINYSEELPKEIVGYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 157 | 157 | 4.5E-34 | – | |
PANTHER | 1 | 157 | 157 | 4.5E-34 | – | |
MobiDBLite | 72 | 109 | 38 | - | – | |
MobiDBLite | 85 | 99 | 15 | - | – | |
MobiDBLite | 125 | 160 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0057400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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