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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0060000 |
| Transcript ID | LotjaGi5g1v0060000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT5G06150.1 Cyclin family protein; Swiss-Prot: sp|P25011|CCNB1_SOYBN G2/mitotic-specific cyclin S13-6; TrEMBL-Plants: tr|I3S1U1|I3S1U1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0060000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10107140..10109117) extracted from Lotus japonicus Gifu genome v1.2.
AATAAAAAATTGGACCGTTGAGGTGGAAGCTTCGCGCATTCATTCCCTGAGTTATAAAAGAGAAACCCGCGTCATCTCAT TCATTCATTGATTCACTGAGAAAGAAAAAGAGAGAAAGTGCGGTTTTTGAATTCAATACCAAAAAGAAAGAAAGAAAGTG AGTTCCGATCGGAGAAAGTGCAGTGCAGTGAAAGAAAGAAAGAGTGATCATTCATGGCTTCACCCAACATCATCGTTCCG ACCAAAGGTACTACATTTCTTTTCTAGTTTTCCTGTTCTGATGAATCATTTTGTCTCTCTGTCTTGTCTGTTCCATTTTG CTTTCCAATTTTCTCCAAAGTTTGAATCTTTATCAATAACATTCAATATCAAAGATTCAATTTTTGTTATTCAATGTCTA AATCACACCAAAGTTTCAATTTTTCCCCAATCACCCACCACCAAAGTTAGGGTTTTTCTTTACTTTTCTTCCGATTCGGT AATTTCTAATTCTATTATAATGGGTTTTTCTAACAGAGGAAAGGAACCGGATAATACTTGGTGATATTGGAAACGGAAGA ACCCTAAGAGAAGTTGATATCAACACCAATTTCTGTCACCAACCACTTGCCACTCAAAAGAAACCGAATGAGCAAATTGT TGACAATATTGATGCTGCTGATGTTCACAATGAGCTTGCTGCTGTGGAATATATTCAAGACATATACAAGTTCTATAAGA CGGTTGAGGTATCTATCTATCTATCTATCTATATCTCAATGGTTATTTATGATGTTGTATTAATCTAGTGTTATGACTGA TGATGTAAATAATAATGCAGAATGAGAGCCGTCCCGATGCCACCTACATGGACTCACAACCTGAGATAACTCAGACAATG AGAGCTATGCTTGTTGATTGGGTGATTGAAGTTCATGTTCACATGACCAGGTTTCATTTTTCAATTGAAACCCTCTACCT CACCATTAACATAGTTGATCGTTTCCTATCACTCGTGACTGTGCCAAAGAGGAAATTGCAATTGGTTGGCATCACTGCCA TGCTCATGGCATCCAAGTATGAAAACAACTCCCTGGCCCCTGAGGTTGACTACTTCGCCTTCCTCTCGGATCGAACTTAT TCTCCTGAACAGATACTTAGCATGGAGAAAATCATACTCAGAATACTGGAATGGGACTTGAGTGTGCCTACACCATTTGT TTTCCTAGTTCACTTTATCAAGGCCTCCTCAATTCGAGATCCGGATGAGGCAGTAGAAAACATGGCACATTTTCTTTGTG AGCTGGGAATGATGCATTATGCTACCTTGCAGTACTGTCCATCAATGATTGCTGCCTCAGCAGTGTTTGCAGCTAGATGC ACTCTCAACAAGAGCCCTTCTTGGAATCACACACTTGAGATGCACACTGGTTACTCACAACAAGAACTTATGGATTGTGC TACACTCTTGGTGAGCTTCCATTGCAGGGCTAGGAATGGAAAGCATAAGGCTGCGTTGTACAACAAGTACTCTGATCCTA AGAGAGGAGCTGTTGTAATGCTTCCACCAGCTCAAATCTAGTTTCTTTGGAGTTTGATGATGTTGGATATTATTATTAAG ATTTAGTTTAGAAATAGAGATATGGTTCAAATATAGTTTCTATTATAGATTAGTATCTTTTAGATTTAGATAGATATAGT TTTGATATCTTTTTACATCTATATATATTGTACAAGTTTATCAATGAAATACATATTAGAAATCTACTGTGTTGCTGTGT TTACTGTTTTTTATTGTTCATTTCAGAATGCCTTTATTTTTTTGGAGCAACAAACCTTGGCCCAGTTTAATGCCTTTATT TCCAATATCATGTATGCAGTTTGATTTCAATTAGATTTGACCTTAGTTTCATTTGAATCAGACTAACCATGCTTTCCTAT CTAATCTCTTCTATCATCTCATGGTACGATTCGTTGAGTGAAGGTAAATAAAACCGCA
CDS sequence (LotjaGi5g1v0060000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCACCCAACATCATCGTTCCGACCAAAGAGGAAAGGAACCGGATAATACTTGGTGATATTGGAAACGGAAGAAC CCTAAGAGAAGTTGATATCAACACCAATTTCTGTCACCAACCACTTGCCACTCAAAAGAAACCGAATGAGCAAATTGTTG ACAATATTGATGCTGCTGATGTTCACAATGAGCTTGCTGCTGTGGAATATATTCAAGACATATACAAGTTCTATAAGACG GTTGAGAATGAGAGCCGTCCCGATGCCACCTACATGGACTCACAACCTGAGATAACTCAGACAATGAGAGCTATGCTTGT TGATTGGGTGATTGAAGTTCATGTTCACATGACCAGGTTTCATTTTTCAATTGAAACCCTCTACCTCACCATTAACATAG TTGATCGTTTCCTATCACTCGTGACTGTGCCAAAGAGGAAATTGCAATTGGTTGGCATCACTGCCATGCTCATGGCATCC AAGTATGAAAACAACTCCCTGGCCCCTGAGGTTGACTACTTCGCCTTCCTCTCGGATCGAACTTATTCTCCTGAACAGAT ACTTAGCATGGAGAAAATCATACTCAGAATACTGGAATGGGACTTGAGTGTGCCTACACCATTTGTTTTCCTAGTTCACT TTATCAAGGCCTCCTCAATTCGAGATCCGGATGAGGCAGTAGAAAACATGGCACATTTTCTTTGTGAGCTGGGAATGATG CATTATGCTACCTTGCAGTACTGTCCATCAATGATTGCTGCCTCAGCAGTGTTTGCAGCTAGATGCACTCTCAACAAGAG CCCTTCTTGGAATCACACACTTGAGATGCACACTGGTTACTCACAACAAGAACTTATGGATTGTGCTACACTCTTGGTGA GCTTCCATTGCAGGGCTAGGAATGGAAAGCATAAGGCTGCGTTGTACAACAAGTACTCTGATCCTAAGAGAGGAGCTGTT GTAATGCTTCCACCAGCTCAAATCTAG
Protein sequence (LotjaGi5g1v0060000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPNIIVPTKEERNRIILGDIGNGRTLREVDINTNFCHQPLATQKKPNEQIVDNIDAADVHNELAAVEYIQDIYKFYKT VENESRPDATYMDSQPEITQTMRAMLVDWVIEVHVHMTRFHFSIETLYLTINIVDRFLSLVTVPKRKLQLVGITAMLMAS KYENNSLAPEVDYFAFLSDRTYSPEQILSMEKIILRILEWDLSVPTPFVFLVHFIKASSIRDPDEAVENMAHFLCELGMM HYATLQYCPSMIAASAVFAARCTLNKSPSWNHTLEMHTGYSQQELMDCATLLVSFHCRARNGKHKAALYNKYSDPKRGAV VMLPPAQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 12 | 328 | 317 | 2.2E-125 | – | |
| PANTHER | 51 | 327 | 277 | 6.6E-126 | ||
| PANTHER | 51 | 327 | 277 | 6.6E-126 | – | |
| SUPERFAMILY | 62 | 202 | 141 | 1.11E-42 | ||
| Pfam | 73 | 203 | 131 | 3.8E-38 | ||
| Gene3D | 75 | 319 | 245 | 3.0E-84 | – | |
| Gene3D | 87 | 203 | 117 | 3.0E-84 | – | |
| CDD | 102 | 195 | 94 | 5.4364E-19 | ||
| SMART | 108 | 196 | 89 | 4.0E-18 | ||
| CDD | 203 | 293 | 91 | 2.24398E-15 | ||
| SUPERFAMILY | 204 | 326 | 123 | 4.4E-36 | ||
| Pfam | 205 | 324 | 120 | 1.6E-35 | ||
| SMART | 205 | 326 | 122 | 7.9E-38 | ||
| SMART | 209 | 294 | 86 | 9.6E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi5g1v0060000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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