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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0064000 |
| Transcript ID | LotjaGi5g1v0064000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase H; TAIR: AT5G10910.1 mraW methylase family protein; Swiss-Prot: sp|Q6MEG4|RSMH_PARUW Ribosomal RNA small subunit methyltransferase H; TrEMBL-Plants: tr|A0A072VDX8|A0A072VDX8_MEDTR 16S rRNA (Cytosine(1402)-N(4))-methyltransferase; Found in the gene: LotjaGi5g1v0064000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10739857..10744476) extracted from Lotus japonicus Gifu genome v1.2.
TCTGTCGCGAATGAAGGCTGCACTCACTGCACCCTTTCGAAAAAAATGGCAACATTGATTTCCAAAATATCACTATTATC CAACCCCAAACTCATTCACCACCGTCGTCGCAATTTCACTCTCCTCTCTCGTTCCGCCGCGGCCACTGCTATCAGCAGAG CCAATAAGCGGAAGGCGTTGGAGAAGGAGAAGGAGAAGAGAAGGACGCGTTCCGACAAAGAAATCGACAAGGACGCTTTG ATTGACCTTTACAACTCCAACAATCTTCATAATCCCAATCATATCCCTGTCATGCTTCCTCAAGTTTTGGACGTTTTCTC AAATTCATTCTTGAACTCCTTCGTTGATTGCACTCTCGGAGCCGCTGGCCACTCCACCGCTGTTAGTATCATTCAATCAC TTCTGAATTTTCTCTACTAGTAGTTCACATTTCTAGCTAGCTAGCTGCTACAACTTTAAAATTTCAATAATTGTAGTTTG GTATATCAAGTTTGGTTAAATTAGGGTTTAGTCCAGTAAATGGGTTGCCTAGTTTTTAAATTCCAGCTCTCATTTTGTGT ATCCACATTTTGGTGATAGTGAAATAATGTTACTAAACCATAAAAAGTGATATCAGGACTAAACATTTGAGTCAGTGTAC TTGAAAATTGCTGTAAAATTAGTGCATGTTTGGAAATCTTATTAATTATGGGGAGAAACTATACTTATGTGAGTAGCTTT TGAGTTTCAGAATTGATTTAGACGATCCAATCATGATATGAGAATATTTCAAAAAACATATCAATTTGCAATAAAACCTC GGGAAAAAAAACACATGTCAATGACTAAAATGAGAATATTTCAAAAAAAAAATAAAATTGAATGACCAAAATGGTGCATT TTAAAATTGAGAGATTAAAGTTAATGTTTGTATTTCTGTCAGCGCACATTCATAGGCAATTTGAATGTGCTTTTGACAAA TCCGTATCTCTTCTGTCATTAGAGTGAATGTGTCTTTGGCAAACTTGAACATAAATACAAGGACAATTTTACTGGCATAA AAAACCTACTTTACCCAAAAAGTTTTTATTCTCCTTAGTGGCAGAGACAATATTTCTGTTTTAGATAGCATTACTTTACT TTAATATATGTTGGTGCTTATATGCAGAAGAATGTATCTTTCTGTATTTTCTCAAATTATTGAATGAATGAATAAATGGA ATAGGTGATTAGGGGTCACCCAGAGTTGAAGTACTTTGTTGGGATGGATGTGGACCCCGTGGCACGTGAAATGGCTCAAA CACGCCTCAATTCCGTTTTGCATGGGAGGGAGTCCAGTGTTAGAGTATTTACAGTGTTAAGGAATTTTAGACACATCAAG TCTGTCCTTGGAGAAATGGGTGAGCAGGACTTAGAAGTTGATGGCATCTTAATGGATTTGGGAATGTCATCTATGCAGGT AGGTTCATTTCTAAAATGAGTTCATTGACATGATTTCCTTCTTCTATTGAATGCTTTCCATGGTTTTCGATTGCAATCAC TCTCATTTTCAAAACTGGAGGCAAATGCCGCGGTTGCAATGACTTATCAAACTGCAATAATTTGCTGCTATGGACTGTAA TTAAAACCATGACAATATTTGATCAAATTATGGCCTTTGAATTTGGAATTGGACTCGTGAGGTTTATTCTCTAGGTAAAG TGCAAACTTATAATTATAATTTGGAGAATGGCATTTGAGATTATGATAAAATAGATTTACTCATGTAATACACTATCGTA GTTAAAATATGTTTTGTTAATTCTTCAGTCAATAGTTATGATTCTGTACTCAACTTTATACAGTGCACTCCTCATTTTAG ATAATGCAAATCCTAAAATTTGTGGTTCAGCATTTTGAATATTTGATCATGTCTCAATGTGTAGAAATATTCTTTTTTGT ATTTTCCTTATATATTTGTTTCTGTTAGGTGGACGATCCTCAGAGAGGATTCAGTGTGCTTGGTGATGGACCCCTTGACA TGCGTATGGATCCTCAGGTATATTTTCAGGCATCTTCGAGTTCAATGCAAAATTTATGCTCTTTTTGAGAAAGAATAGTA TGATGGTAAATTGATTTTTATGAATTATATGCAATCCTTTTCCTAACCTAATTTGCAGCAGTGAAAACGGAAAACTTCCG GGATGGCACCATGTAAATATTGTGTAATTTTATATGGTTCTTTACTTTGTGAGTCTCTTTGATTAATTTAGACGGTCCAA CCCAATATATATGGTTTTCTTTGTTGAATGACAAGAAAAGAAACAAGAGGAATTGGTGAATCCGTGTGTTGAACTACACA GCGGAGTTCATTATATATAATAGGTACCATAAAGGTACAATAAATACAGAATATCTTATTTCTCTAATTACATGATTATT CTACCTATTTACAATTAGTAGAAGATATCCTACTTATTTACAAGATATCTAACATTCTTCAATATAGCAATTAAAATACC ACTTTTGTATATATGGCCCTGAGTTACTGAATCTGTCCAAATTCTTTACCATGCTAGAAATTCCTTTGATGGTTTTCTTC AATATTTCTTGTTAACGAAAAGTACCGCTTTTCTTGTTAGTAAGCATGTTTCTTGTGAAATGATATTCTGTTGCCAGCTT GCTGCAGAGTGATGCGTAATTTTTGTTTTCTATTGAACTGATGTACAGGCATATGACAGGCAAGTCTTACAGCAGAAGAC GTTTTAAATTCTTGGCCAGATTCTGAAGTGGGACGAATCCTAAGGGAGTATGGGGAAGAAAGTAATTGGCGTACCCTGCA AAAGAAAATTGTTGAAGCTCGAGTACATGGTGGTTTGCATTCCACTGGTGACTTGCTGGATCTTATCCGGAGTGTGACTC CTGCAATGAGAGGTACCTCCTACTTCAATTTTCTTTTGCTGTTCTGTTTTGCTTTGTCTATGAACACCATTTCTTATGCA TGCCATTTCTTATCCAACCATTCCATTCCTCAAATTCATTACATGGAATCATATGGTCTACTTTTCTCTATATCCTCTTC AATTCTTTCTCACCACTGCTAAATTTATTTCTCCCTCGACATGACTTCCACCTTCACATTCCAATCCTTCTCAAGATCCC ACAAGTGTTTATTACATTCATTCTGATAAAAATCTCTCCTTGGTACTAGTTTCCCCCAATTATTTAGGTAAGAAAAAATT TGATTTCGTAGATGGTTAAGTTAAGTAATCAATGGAGGAAGATATGACTCTTTGAGTGGAACCAGTGCAGCACACCCGTA TTTTCCTGGTTGAGTCATTCATGTCTACTCAAATTGCAGTGTGCATTGATGATGCATTAGAGGTTTGGCAAGATCTTAAA GATAAGTTTTCACAAGGGGGATTTGTCTACAACTCTCAGCTACATGTGGGGTCTTTATCATATCATCAATTTGAAAGATG ATGATGTAATTAGATTCTCATTCTAGAAGATTAAGTATTTAACAGAGTTACTTGTAATGCACAATGATAAGTCATAGTAA TTAATTACTCTGATTGTAATCAAGTAAATTCGGTGTCATGCAAAACTTCACCTCTTACTCTAACCTGTCATTTTCTCTAA AATGCCATTCCTGACGTCCAGGTGTGCCGGCATTCAAAAAGGATGTATGGCATGAGCTTGCTTAATTAAAGGATGTGAAC TGTAATTATTCATACACAGAACAATATTTAATTAAACTGTAACAGGTGGAAGGCAAGGTTGCATAAAGACAGCAACCCGG GTGTTTCAAGCTCTGAGAATTGCTGTTAATGATGAACTAAAGACTCTTGAGGATTCCCTCTATTCTTGTTTTGACTGCCT TGCACCTGGGGGTAGGCTTGCTGTCATATCTTTTCACAGTCTGGAGGACAGAATTGTGAAGCAGACATTTCTCGAGATCA TTAAAGGGAGAGATGATGACGGGGACAGGGGGAGCTGCAATAATGATCTTGGGAAGACTAGTGATGAAATTAAAGAAAAA GAAGCATGGATAAGACACACAATACATGGATCAAATGGAATAATTCTTACAAAAAGACCAATCACGCCTTCAGAAGAGGA AGAAACGTTAAACCGCCGAAGTAGAAGTGCAAAGCTCAGGGTTATTCAGAAGCTTTGAAGATAGAAGCTTTGAAGATAGA AGCTTTGAAGATAAAACATGAGATTGCTGTTTGGAGTAGAGCCCTGAGAAACCCCTGTATTCATAAGCTTGTTTGTCTTT GATAGCCTACATATTTTTCAGTAGAAGAAAAAAATTGAAGGCATTCGAAAGACTTGCACATAAAGGTGCAACTTTAAAGT TGAATGGCAAATTATCTGTTTTTAGCTCTAGAGTCTTAGCAAACTATCTGAAGATTTTAATTTGTATTAATTCATCTGCT TAAATTTTACCCATTTATCTATTCACAAGTATATGATTAGATCATTGGAAGATATCATTTGTATTTTTTGGGTTCCAAAA GTTTCTGTTTACATAAATTGGTTGATGAATTTTTCAATTACTAGTACTAGTAGGCTATTTGTATATAAAATTTGCAAAAT TGCAAGCTTTATAGCATGTTTGGATCAACTTCTCTTTTTTCCTATTAAAAAAAACTTCCC
CDS sequence (LotjaGi5g1v0064000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACATTGATTTCCAAAATATCACTATTATCCAACCCCAAACTCATTCACCACCGTCGTCGCAATTTCACTCTCCT CTCTCGTTCCGCCGCGGCCACTGCTATCAGCAGAGCCAATAAGCGGAAGGCGTTGGAGAAGGAGAAGGAGAAGAGAAGGA CGCGTTCCGACAAAGAAATCGACAAGGACGCTTTGATTGACCTTTACAACTCCAACAATCTTCATAATCCCAATCATATC CCTGTCATGCTTCCTCAAGTTTTGGACGTTTTCTCAAATTCATTCTTGAACTCCTTCGTTGATTGCACTCTCGGAGCCGC TGGCCACTCCACCGCTGTGATTAGGGGTCACCCAGAGTTGAAGTACTTTGTTGGGATGGATGTGGACCCCGTGGCACGTG AAATGGCTCAAACACGCCTCAATTCCGTTTTGCATGGGAGGGAGTCCAGTGTTAGAGTATTTACAGTGTTAAGGAATTTT AGACACATCAAGTCTGTCCTTGGAGAAATGGGTGAGCAGGACTTAGAAGTTGATGGCATCTTAATGGATTTGGGAATGTC ATCTATGCAGGTGGACGATCCTCAGAGAGGATTCAGTGTGCTTGGTGATGGACCCCTTGACATGCGTATGGATCCTCAGG CAAGTCTTACAGCAGAAGACGTTTTAAATTCTTGGCCAGATTCTGAAGTGGGACGAATCCTAAGGGAGTATGGGGAAGAA AGTAATTGGCGTACCCTGCAAAAGAAAATTGTTGAAGCTCGAGTACATGGTGGTTTGCATTCCACTGGTGACTTGCTGGA TCTTATCCGGAGTGTGACTCCTGCAATGAGAGGTGGAAGGCAAGGTTGCATAAAGACAGCAACCCGGGTGTTTCAAGCTC TGAGAATTGCTGTTAATGATGAACTAAAGACTCTTGAGGATTCCCTCTATTCTTGTTTTGACTGCCTTGCACCTGGGGGT AGGCTTGCTGTCATATCTTTTCACAGTCTGGAGGACAGAATTGTGAAGCAGACATTTCTCGAGATCATTAAAGGGAGAGA TGATGACGGGGACAGGGGGAGCTGCAATAATGATCTTGGGAAGACTAGTGATGAAATTAAAGAAAAAGAAGCATGGATAA GACACACAATACATGGATCAAATGGAATAATTCTTACAAAAAGACCAATCACGCCTTCAGAAGAGGAAGAAACGTTAAAC CGCCGAAGTAGAAGTGCAAAGCTCAGGGTTATTCAGAAGCTTTGA
Protein sequence (LotjaGi5g1v0064000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLISKISLLSNPKLIHHRRRNFTLLSRSAAATAISRANKRKALEKEKEKRRTRSDKEIDKDALIDLYNSNNLHNPNHI PVMLPQVLDVFSNSFLNSFVDCTLGAAGHSTAVIRGHPELKYFVGMDVDPVAREMAQTRLNSVLHGRESSVRVFTVLRNF RHIKSVLGEMGEQDLEVDGILMDLGMSSMQVDDPQRGFSVLGDGPLDMRMDPQASLTAEDVLNSWPDSEVGRILREYGEE SNWRTLQKKIVEARVHGGLHSTGDLLDLIRSVTPAMRGGRQGCIKTATRVFQALRIAVNDELKTLEDSLYSCFDCLAPGG RLAVISFHSLEDRIVKQTFLEIIKGRDDDGDRGSCNNDLGKTSDEIKEKEAWIRHTIHGSNGIILTKRPITPSEEEETLN RRSRSAKLRVIQKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 35 | 413 | 379 | 2.8E-134 | ||
| TIGRFAM | 75 | 413 | 339 | 6.9E-79 | ||
| Pfam | 78 | 413 | 336 | 2.3E-88 | ||
| SUPERFAMILY | 78 | 414 | 337 | 2.94E-33 | ||
| Gene3D | 79 | 411 | 333 | 2.5E-87 | – | |
| Hamap | 79 | 414 | 336 | 33.23 | ||
| Gene3D | 194 | 300 | 107 | 2.5E-87 | ||
| SUPERFAMILY | 196 | 299 | 104 | 1.96E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi5g1v0064000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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