Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0068800 |
| Transcript ID | LotjaGi5g1v0068800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NB-LRR type disease resistance protein; TAIR: AT3G14470.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1; TrEMBL-Plants: tr|G7KEG6|G7KEG6_MEDTR LRR and NB-ARC domain disease resistance protein; Found in the gene: LotjaGi5g1v0068800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11396803..11401903) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTCATGACATGAATTGGTTATGCAAGAAGAGGCACTTACATCTTTTGTGCTTGTGATGTTAGTTGGTATTTACATCC AGCCAGCTCAACTGATTCAACTGTTAAGTTTAAGTCTTAAGCATGGAGAATACGTACAATTAATTTGGCTTATTTTTAAC AATTGATTAAAAAATCTGCTGCTTTATCTACGAGACATGTGCCGGCATACAAAAAAAAACGAGACATGTGCCGTCTGAAC ACATGCTATAGCACAATTATCTCTAATAAAAATTGTGCAAATCTTCAGCATCCTCCAAATAAAGTGAGCATTCCGAGGAA TCACTCACATATAAAAATGGCACAAAAAGAAAGCATCCTCCAATTGTGCTTAGAAACGATCGACAAACGAGTCGAGCCTC AAGATATACATATATACAGTATACACACAACTTGCAATTCCTTACCTTTCTTACTAAGTTTCTCTCTTCTCATATATCTT ATTCCTACTCTTCCTGTGTTGAGATCATGGCGGCAGTTGGGGGTGAAGCTTTTCTCTCTGCTTTTATTGGAGTTGTTATG GACAGGCTGGCTTCTCCTGAGTTTGCCAACTTCATCCGAGGGAAGAAGTTTGACGATAATTTGCTCCAACGGCTGAAGAA CACTTTTTATGCTGTTGAAGCAGTGATGAACGATGCTGAGCAGAAACAGATCAAGGACCCTGCAGTGAAGAAGTGGCTCG ATGACCTCAAAGATGCTGTCTATGTTGCTGATGACTTTCTGGATCATGTTTCTACTAAAGCTGCAACTCGAAAGGAGGAG GTAAGCAACTTCTTCTCTCGCTACTTCAATTTTCAAGACAGGGACATGGTTAATAAGTTGGAAGACATAGTTGGAAGACT GGAATCTATTTTCAAACTCAAAGATACTCTTGGTCTTAAAGAGGTTGCTAGGGAGAACTATTCATGGAGACTCCCATCTA CCTCTCTTGATGATGGGTTTAATATCTATGGCAGGGATCAAGACAAAAAGGTCATCCTCAAATTATTGTTAGATGGTAAT ATGAGTGATGGTAAAGTAGGTGTAATACCTATTGTTGGTATGGGTGGGGTGGGAAAAACAACTTTAGCCCAACTCGTCTA TAATGATGAAAAATTAAAGCAGGAATTTGATTTACGAGCATGGGTTTGTGTTTCTGATAAGTGTGATATTCTCAAGGTTA CTAAGACTATCATAGAGGCAATTACCAAAAGTAATTGTGGTTTGAACGATCTAAATTTACTCCATCTTGAATTGAAGGAA AAGTTGGTGGGGAGGAAATTCTTAATAGTTTTGGATGATGTTTGGATGGAGGATTATGTTGAATGGAATTCTCTTATAAA ACCTCTTCAATTCGGAACTAAGGGAAGCAAAATTCTCGTGACGACCCGCATTGAAAAAGTTGCTTCTCTAATCCAAACTT TCCAAAGTTATCATCTAAAACAATTGTTGGATGAAGATTGTTGGTTAGTCTTTGCGAACCATGCATGTTTTTCATCAGCA TCTAATGGGAACACAACTCTTGAAAAAATTGGCAGAAAAATTGTTAGAAAGTGTGATGGATCACCTTTAGCAGCACAATC ACTCGGAGGCTTATTGCGAGGCAAGCATGATATCAAAGACTGGAATAATATATTAAGTTGTAACATTTGGGAACTTTCTG AAAATGAGAGCAAGATTATTCCGGCACTGAGAATTAGTTATCATTATCTACCTCCGTGTTTGAAACGTTGCTTTGTTTAT TGTGCGTTGTATCCTAAGGATTATATGTTTGAAAAAGATGAATTAATCTTGTTGTGGATGGCAGAAGATCTTTTACAGCC TTCAAAAAGTGGAAAGACTTTAGAAGAAGTCGGTTGTGAGTATTTTGATGATTTGGTTTCAAGATCATTTTTTCAACGTC TTGGCACTTCAAAGCGTTATTTTGTGATGCATGATCTTGTCCATGATTTAGCGATCCTACTCGGTGGAGAATTCTACTTT AGATCCGAAGAACTTGGGAAAGAAATTAAGATTTGTGTGAAGACTCGTCATTTGTCATTAAGTGGGTTAAGTGATGAAGT CTATGAAAATTCTGATTTTTTTGGTAGAGTTAAATTTTTAAGGACACTCTTACCAATTCATATTAAAGAATCTCCATTCA ACAGTGAAAAGGCAGCATGCATCATTATGTCCCGTTTGAAGTACTTAAGAGTCCTGTCATTTGGAAGATTTGTGGAACCA TTACCAAATTCAATAGGTGAATTGATTCATTTGAGATATTTGGACCTCTCTTACACATTAATAAAGACATTACCGGAGTC ATTGTGTAACTTATACAATCTACAAACTTTGAAATTGGGCGGGTGTTCATTGCTGACTATGTTACCTGATGGCATGTACA ATCTTGTAAATTTGCGTCATCTTGATATTTGGGGAACTCAAATAAAAGAGATGCCCAAAGGAATGAGTGGATTAAAAAAT TTGCAGCATTTAAGTAAGTTTATTGTGGGCAAGCACGAAGGGCAGAAGATCAAAGAACTGGGAAAGCTTTCAAATTTACA TGGATCACTTAACATTTGCAATTTGCAGAATGTTGCCAATGGTAATGAAGCGTTGGAGGCAAAGTTAACAGATAAGAAAA ACCTTGATAGGTTACGCTTGTATTGGTCTCTTAAGAGCCATTTTACAGACTCCCTAGCTGAAATGGACATTCTTGACAAG TTAGAACCACACCAAGACCTGAAGCATATATCAATATCTGGTTACATGGGCACAAAATTTACAAAATGGGTTGGACGTTC TTCCTACCACAACATGACTTCAATATGTCTATCTGATTGTAAGAACTGCTGCATGCTTCCTTCACTTGGACAACTGCCCT CTCTCAAGACACTATATATTTGCCAATTGAACGGGTTGGAGACTGTTGGTGTTGAATTTTTGAAGAGCGATGAATCCTTT TCAGGGACATCTTTTCCCTCCCTACAATCTCTGACATTTGAAGACATGCCGAGTTGGGAGGTGTGGCGTCCATTCGAATC AAATGCTTTTCCTCAACTAAAGAAGCTCTCAATAAGCTATTGTCCCAGATTAAGGGGAGATTTGCCATATAACCTTCCAG CTTTGGAATCACTTGATATTAGCAGTTGTGAGCAGCTTGTTTCTTCTCTTCCAAGGGCTCCTGTCTTGCGTTGTTTAATC ATAGAGGAAAGCAATAAAGCATCATTGCGAGAGATACCTCTTTCGGTGGAAGATCTACGAATCGAAGGAAGCGAGGTGGT GGAGTCTATGTTTGAGGCCATTACCATCCCCCAACCAACTTCTCTTCAATGTTTAGAGATATGGAGCTGTTCATCTGCAA GATCATTCCCGGGAGATTGTTTACCTCCATCATTGAAGAAGTTGATTATTTTTAATTTCAGGAAGCTAGAATTTCCAAAG CAGCAGCACGAGTTACTTGAGTCTTTGTTTATAAATAGTTGCTGTGATTCTCTCACATCCCTTCCATTGGAGAGCTTTCC AAATCTCCATTCTCTCACGATCAGAAACCTTGAAAATCTGGAAAGTCTTTCAGTGCAAGAAGTTGCTCTCACAGATTTCG TCATAGATGGCTGCCCCAAATTTGTATCATTCCCAAGAGAAGGATTGTCTGCTCCCGGTATGATTGAATTCTCCGTCTCG AATTGCGACAAGTTAAAGTCATTACCTTGTCACATGAGCACTCTTCTCCCAAAGTTAGAATCTCTCAAGATAGACAATTG CCAAGAAATTGAGTCATTTCCTAGTATGCCGCCTAGCTTGAGATCACTTGAGATTGGTAATTGTGAGAAATTAATGAGGA GTCCTTCCCTAGCTTCGGTGGACATGCTCACCCGTCTTACCATTAAAGGTCCATGTGACGGTGTCAAGTCCTTCCCGGAG GAGGGTTTGGTGTTGCTGCCTCCATCCCTTACTTCCCTGGAGTTAGTTAAATTAACAAGTATGGAGACGTTGGAGTGCAA GGGGCTTGTCCACCTCACCTCCCTGCAACAATTAACAATTGACCGCTGTCCGAAGCTGGAGAATGTGATGGGAGAAAGGC TGCCTGCCTCTCTAATAAAACTTCAAATCACTGAGTGTCCTCTGTTGAAAGAACATTGCCAAATGAAGCACCCGGAAATT TGGCCCAAAGTTTCCCACATCCGAGGCATTAAGGTTAATGGAAGACCGAAGATGTATTCCTTGAGCTAATTACTAATTAC TCAATCTCAAGTAAACGCCACTTGCCTAATTTCATTCATTTTCTTCACCAACTTTTTCCATTACTGTTTCAATTGGAAAA GAATTATCTTCTACCAACGCATTTATTTAACTTCTTTCATAATCACATAGATCACAGTCCAAGATTTACAGGTGAATTGA TGTTTTTTTCAAATTGTGAATAGTTAGCAATTCTTTTTTCTACTAAGCATTCTTGTATTTTTATGCCAGTAAAAAAATAG TACAGAAAAAAAAAATCTCAATATAGAAGATATATATACAACTTAAAAGGATGATAAGGAAGTTAAGTTAGTGTTTTTCC CATGTATTACAGATATCAGTACAATCATATGAGTTCGTAAACTTGCTTTCTAACATAATAGTTTTACTGGCACATATCTT CATGGAAGGGATGTTTGTTTTGCTAAACTGATTATTTGCATCTCTCGCATACATTGTCATCAAACTTTTGTGCTAGAGTT GAAAAATTTTGAGTTAAAAAGTTTGGGAACATTTTGAGTGCAATGGGATTCTCCATCTCACCCCACTAACATTAGAAACT AATAACTGTTCCAGGCCGGAGGATATGGTGCGGAATATGCTGCCTGCTGCTCTAAGAAAACTTGAAATGTCTCCTGGGAG AATGATGTAAAATGAAACACATGCAAATTTGGCCCAAGTTTTCCCACATCTAAAGCATTATGGTTAATGACAGATGAATT TCTTGAACTTGAACTGGGATTATCAGTAGGCAATTAGTCTGCTCTTCATCGAGTAAATGCCACTTGCCCAATTTCACACT TTTTTTGCACCAAAATTTTATATTATCATTTCTATTCATCCTATTTCAAACGAAAACTGAT
CDS sequence (LotjaGi5g1v0068800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCAGTTGGGGGTGAAGCTTTTCTCTCTGCTTTTATTGGAGTTGTTATGGACAGGCTGGCTTCTCCTGAGTTTGC CAACTTCATCCGAGGGAAGAAGTTTGACGATAATTTGCTCCAACGGCTGAAGAACACTTTTTATGCTGTTGAAGCAGTGA TGAACGATGCTGAGCAGAAACAGATCAAGGACCCTGCAGTGAAGAAGTGGCTCGATGACCTCAAAGATGCTGTCTATGTT GCTGATGACTTTCTGGATCATGTTTCTACTAAAGCTGCAACTCGAAAGGAGGAGGCCGGAGGATATGGTGCGGAATATGC TGCCTGCTGCTCTAAGAAAACTTGA
Protein sequence (LotjaGi5g1v0068800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAVGGEAFLSAFIGVVMDRLASPEFANFIRGKKFDDNLLQRLKNTFYAVEAVMNDAEQKQIKDPAVKKWLDDLKDAVYV ADDFLDHVSTKAATRKEEAGGYGAEYAACCSKKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 9 | 98 | 90 | 2.2E-19 | ||
| Coils | 40 | 60 | 21 | - | – | |
| PANTHER | 41 | 99 | 59 | 6.7E-13 | – | |
| PANTHER | 41 | 99 | 59 | 6.7E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0068800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…