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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0072100 |
| Transcript ID | LotjaGi5g1v0072100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chalcone synthase; TAIR: AT2G37300.3 transmembrane protein; Swiss-Prot: sp|P08894|CHSA_PETHY Chalcone synthase A; TrEMBL-Plants: tr|A0A0B2S4K1|A0A0B2S4K1_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0072100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11888406..11891422) extracted from Lotus japonicus Gifu genome v1.2.
AAAATCTATTACATTCCAAAAAAGTGAAAAACAGTGTCTTTAACAATTACCGTCAGTAAGTGCCAAAAAAGACAAAGAAA GTGTACTTGGAGGTGGATATAATTATTTATAACGAGACAGGGACTTGATTCAAATTTCAAAATCACCTTGTGTGAGCTGT GATTGATGTGAGCAAGATTCCATTCCATTTTCAATTTCATACTCATATATCACGCAAATTTGCACATTTGTTTCTGAACC AACACATTCCACAACAAGGATTCTTCTTCCAAACAAACCACCTCAACACACTTTTGGGGTCTGATCTCAAGCCCAGAGAT GGTGACTTGCAGTGATCAAAATGCAGTTAGTAAGCATGTGATGGCAGCTGATACCATAAAGGACCACACATTGAGGTGTG TTTTTCATCTCTCTCTATCTCTCTAATATTGCATTGGGAAATTGGCTATGGTTAAATTGCAATCGCGGTTGCCGCTACGT CGCGGAATTGCTGACAAATGCAGGGTGATGTGGCTGCAATTGCAGCTGCGATGCTGATGAGGTACTCCAAAACCCGTTAG GTTGGGGCCGCAATTGTGGCTGCGGATCCCAATTTGAAACCCTGACCACGAGGATTCCAAAAAACTTGTTACATTGCGGT TGCAGACTGCAATTTGAAACCCTGATTATTAGATTGGCAAGAAAAATTGAATGACATTGTTTGATGGATCATTTCAGCAG CAAGAAAATAGAAGGAGATGAGGGTTTGAACACCGTGGCGTGCCTCAGAGGGAGGTTACTAGCAGAGAGACAGGCTTCAA AGGTAGCTAAGGAGGAAGCAGAATCAATGGGCAACAAGGTACTAATATCTTAATTCTTAAATCAATTCTATTAAGAGCAA CAACCTTGCATACATTCACTTTTCTTCTGTGACACTGTTTTTTAGATCATCACTTTAGAGGAAAGAAAAATCTGAAAATG ACATTGTTTGTTCTGTTTGTGGTGTGGCTTTTTGACTGACAAACTTTATTCTCTCTCCCCCAAAACTTTGAAAAATGCTT CTCTGGACAGTTGGTTGAGTTGGAAAAGCTGCTTAGAGAAGAGATTAAATTAAGAGATAAAGCTGAGAGGAAGCTAAATT TTTTGAAGAAAAAACTTGAATCTTTCAACACAACCTCCAAAGGGAAATTGGAGCAATCTGATTCATCTGAGAAATGTGAA TCTTTCAACACATCCTCCAATTCAGGGCAATTAGAGCAATCTGATTTGTCAGAGAAATTTGATAATTATTGTGAGACATC TTCAATTAGTTCAGCTTCCAAGCATTCAGAAGAAAAGAATCTTGCAAAAAACCCAACTTTGCTAGAAAATGTTGCACTCA TTCAGACCCATAATGGTGAATCCACTACAAAAGATTGTGATTCTCAGATTACTGATTGTTCCAATAGTAATTCAGACATG GGTTTCTCTTCCCAGGATTTGAACAATGATGGTAGCAGGTATAACATCTGAACATGGTGATCCTTATAGATTAGAATAGT AGTTTTTTTAGTACTTTCAATTTTATATATTTGTGTTTCAGGCTTTCTAGTTTGAGCTCAAAATCATCCGTGACAGAGAA TGAGAGTGATTATGGAGATTCCTTTGATAATTCTATGGCATTAGTTCCTGTGAATATGACAGCAACATCACAAGCCACCA TTAACCAAAAACCAGTTAATGAAAGAGTCGGTGAAGCTCTAAATGCATTGAAGGTTGCAAAAGAAAGGCTCCAAGGTTCA TTAGGAATAAGGCAAGTGATTCCCATTGGCACAAATTAAGCTCACACTCGATGCATGTTTGGAAACCATTCTTCAACTGA TTCTGAAGCCATAATCGATTGTGATGAGAAGCTTCTGTGAGTAGTTTCTGCATTTTAGAATTGATACCGATGATGAAAGA GAAACGGATCGAAACATGCTATTAGATAGTAATAATGCTAAATAATTTCTCTGTTAATGTATTATAGAAAATAAGATTAT TTACTGAATGTTTTCTACAAATTGATTGTGAAAATCAGTTCTAGAGATAAATTATTGTAAGTAACTTCTAGTGCCAAAAT TGATTTTGATGAAAGAGAAGTTGATCTGAACATTCTATTGGAAAGCAGTTTGGTAGAAATAGCAATGAGCTTGAGGTGTT TAATATTATGATTAATAGAAGAGGGGTAAAGTTCTTGTGAATTGTGGTTTCACTCACCACATAAGGCATGTGATGTGGGG ATGTGTTGTCAGTCTAAGGCTTGTTCTCCCTGGTCCAACTATTTTGTCCAAAACATTTTCTTGTGCTTTTTCTTCTTCTA CTTTTGGTGACTTTTGTCATCACTTGATTCATGTGACTTCCATCAACATTGTTACACTTGGATTTGGTATATAACTTATG AGAAAGACATGGCTTAGCCTCAGACCTAAAGTATAGTAACTAGGCAAATTTGGAATATGTTGCTCTGTTCAGATATATGC TCAGCTATGCAGATACAAACATCACGGTTTTATGTTTCACCTAATGTTTAACATACATGCTTGATTAGCTTTTTCTATTT AAAAACATCACAATTTTTGTTTTTTCATTTTCCTTCTATCAAAATTTATGAAATACTCCTTATTCTTAATATTTGAGCTG TGTAATTAGCCTCATGCAACAATTCAAGGCTTAATAGCACTTTTACTCCCTCACGTTTGTCATATGTGCGAAAATCGTCC CATAAGAAAATAGCAAAACACCTTCCTCACTTTGTCGAACAGTAGCACTTTTGGTCCCTCCTCACTATTCCGTCAAAAAA CTAACATTTTCTGTCATTGAAGTGTTCTCTGCGCACAGATCAGGGTGTACCCTGTCATTGATGCTCCCTCCTCGACTTGC TTCTTTCTCGATCTCATCCTCTCTGTTCTCGATTTCTTTTTCTCCCAGCTTCAAATCGAGAACTTAGTCAGGTCCAGATG AAAAGGGCTGATTCTCCCTCATCCTCCAGGTTCTCGATTTCATCCACCCTCTTTCAC
CDS sequence (LotjaGi5g1v0072100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGACTTGCAGTGATCAAAATGCAGTTAGTAAGCATGTGATGGCAGCTGATACCATAAAGGACCACACATTGAGCAG CAAGAAAATAGAAGGAGATGAGGGTTTGAACACCGTGGCGTGCCTCAGAGGGAGGTTACTAGCAGAGAGACAGGCTTCAA AGGTAGCTAAGGAGGAAGCAGAATCAATGGGCAACAAGTTGGTTGAGTTGGAAAAGCTGCTTAGAGAAGAGATTAAATTA AGAGATAAAGCTGAGAGGAAGCTAAATTTTTTGAAGAAAAAACTTGAATCTTTCAACACAACCTCCAAAGGGAAATTGGA GCAATCTGATTCATCTGAGAAATGTGAATCTTTCAACACATCCTCCAATTCAGGGCAATTAGAGCAATCTGATTTGTCAG AGAAATTTGATAATTATTGTGAGACATCTTCAATTAGTTCAGCTTCCAAGCATTCAGAAGAAAAGAATCTTGCAAAAAAC CCAACTTTGCTAGAAAATGTTGCACTCATTCAGACCCATAATGGTGAATCCACTACAAAAGATTGTGATTCTCAGATTAC TGATTGTTCCAATAGTAATTCAGACATGGGTTTCTCTTCCCAGGATTTGAACAATGATGGTAGCAGGCTTTCTAGTTTGA GCTCAAAATCATCCGTGACAGAGAATGAGAGTGATTATGGAGATTCCTTTGATAATTCTATGGCATTAGTTCCTGTGAAT ATGACAGCAACATCACAAGCCACCATTAACCAAAAACCAGTTAATGAAAGAGTCGGTGAAGCTCTAAATGCATTGAAGGT TGCAAAAGAAAGGCTCCAAGGTTCATTAGGAATAAGGCAAGTGATTCCCATTGGCACAAATTAA
Protein sequence (LotjaGi5g1v0072100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTCSDQNAVSKHVMAADTIKDHTLSSKKIEGDEGLNTVACLRGRLLAERQASKVAKEEAESMGNKLVELEKLLREEIKL RDKAERKLNFLKKKLESFNTTSKGKLEQSDSSEKCESFNTSSNSGQLEQSDLSEKFDNYCETSSISSASKHSEEKNLAKN PTLLENVALIQTHNGESTTKDCDSQITDCSNSNSDMGFSSQDLNNDGSRLSSLSSKSSVTENESDYGDSFDNSMALVPVN MTATSQATINQKPVNERVGEALNALKVAKERLQGSLGIRQVIPIGTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 282 | 266 | 1.2E-58 | – | |
| PANTHER | 17 | 282 | 266 | 1.2E-58 | – | |
| Coils | 53 | 101 | 49 | - | – | |
| MobiDBLite | 101 | 131 | 31 | - | – | |
| MobiDBLite | 113 | 131 | 19 | - | – | |
| MobiDBLite | 193 | 226 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0072100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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