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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0074900 |
| Transcript ID | LotjaGi5g1v0074900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Breast cancer type 1 susceptibility protein; TAIR: AT3G53320.1 mediator of RNA polymerase II transcription subunit-like protein; Swiss-Prot: sp|Q21625|DPOA2_CAEEL DNA polymerase alpha subunit B; TrEMBL-Plants: tr|A0A072VKF5|A0A072VKF5_MEDTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0074900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12406341..12410264) extracted from Lotus japonicus Gifu genome v1.2.
TCGTTTTGTCACACCTACCCACCTCAGACTCTCTATTTTTTATTTTTCTTGAAAAATTGACATGGTAGTATTATTTTCCC CCTAATTCAATTATTCAAACAAATCAACCTCCATAACCATAGCCACTTGTCCCAAAGTTGAAACTGTAACCGCAGTTTCT TCATCATCACAACTGAAACTGAAACTGAAACTGAAACTGAAAATCAAAACCCCCCGGCCCCAATCATCATGGCTGATGAT ACTTTTCTTCTCAGCAACACTGACCTTCGACGTCTCAGCCTCATCGACTTCTCTTCCGCCGACGATTCTCTCATCGCCAC CAGTCCCCAACATTCAGGTCCTTCCTTCGAAGATGCCGCCATCAAACTCCGAGAATGGGAGCAGGAACCTCAACCAAATG AGACTCAATCGCCGGAGAAAACTAGCAAGTGCAATTTGCGGGCCAGTTTGGCTTGGGATAAAGCATTTTTCACTAGTGCT GGTTCGTTAATTGTTATTGTTAATCACCATCAATTCCATCAATGTTGCTGTTACTTTGGCGCAATTTTCACAAACAATTT TATATTGTTAGTTTTTGATTTTGTGTGTGTTTTGTGTATGAATGATTAAATGGGGTGTTCAGGTGTTTTGGATCCTGAGG AGTTGAGTAGTATGATTGAGAAGAAGGGTGAGAAGCTTGCGTTGGCGTTACCGGGGATTCAAGAGGATGTGCAGGGGTCA TGTGAGTCTTTCTCTACCTTTGAAAGTGATAGCTTGACCCTGGAGAGTTTAGAGGCTGATTTGTTTGGGGATGTTAGAGC TTCTATTCAGAAATCCAGTAGCAGGGTGTCTAATGAGGCTAGTGTGAACAGCAAAGCCAGAGTTCCATCACCAAGGTTTC GAACTGATCGCTGTGAGTCTTTGTTTTTTATCTGCACCATGGACTTGGTAGTTGTTGTTGTTGGTATTGGCCAATTGTTG CTAGCATCCTTGCAGTCTGTTAGTTTCTGTTGGTGTGTCCAATTTGTGAACTGTGAAGAAAGCATGGATTTACACTTTAC ATAGATAGCTAAACTAGTTCAGGTTCAGTAGATTTTTTTTCTTCTAGGAGAATCTTGTGTGCTTCATACTTTAGCAGCCT CAATCTCTACTTGCCATAACCAATTACCAACAGCAGCACAATTATCACAAGTATCAAAATCTTTTGCTGCTGTCCTATTG ATTATTACTGTTAAGCAAACTCCTTTCTCCCGGACAAATATATATATAGAGAATTGAGAGATATACACCATGATAAAAAT ATGAGCAATGAAGGGAATATGATGTGGTGAATGTGTAAAGTTATGGCCATTTTCCTTCATAGCAAATATTTTATCCGTAG CTCATCTTTTTGTTATTTACTAACTTCCCTGGAAAAGAAATATCCTCCCAACTTGCGCGTGATGACATAAGTCAAGGATT GCTTCTCCTGCTGTGTTCATGTAAATGTGATCTGACAGTGAGATTTCACTCTTAGTTTTATTGGAAATTGGTACGAGACT TGTAGTTGTTAGGACATGGAATGACTGATTATCAAATACTTTCATCTTGTGTTTGCACTTTCTGAAAAGTTAGGAGCTAG GAGGTTGAATTTTATTTAATTTACTCTGCTTATGTTGTGGGGCACTGATTTACCTTTGATTGGTCAAATTAAACTATTTC TTGATTTTCATTTCAGTTTCAAAAAGGGATGGCATGGCTTCTTGTAATAAGGTAAATTGGATTGGTGAATGGACCAGAAA TATTTAGCATATATTTTTTAATAGTTTCTTTTTTATCCGAAGAATAGTTCAAGAAAATGATTGCAATAACTATTGATTTT GGATGAAGATCCCATCTTCTAAGAGTCCAAGTGCTGTCATGCAAGGAGCAGGGAAGCTGACAAAGAAGAGTCCTATTTTT TCACAACTTCCCGGGGTACGTAACTAAAGAAAACCATCAAAGAGACTTGTGCTGTGGTTCTCTACTTATGCTAGCTGATA CATTTGCAGAGAACTAAAGCAGCCATAGATCATGAAACTGAATTTTAGTGGCTTATGTGTCTGATAGTATTTTTTCTTTT TCAAAGACGCCTGTTGCTAGTAGGGAAGAGCCGTCTATCTTAAAGCAATCAAAGCTACTAGGAAAGTCTACTCCAAGTTC AACAATTTCATCCAAGAGAGCTTCCCCTAGCAATCTGCATGTCAAAAGTGAAAATGACAAAGCAAAAGGATTAATCGGTG GTTAGAACTTGTTTCAGTATATCTTTTTTCCTCTCATTTGGTTATAGTGATTGCCTTTTTCTCAATTGTTTTTCACTTTT AACTATAGTCAGTCTTTTCAGGTAAGGTCAATTCCATGACTAGCACACCTGTTTTTAAGGGCTCTCAAGTCATTGTACCT AAACCCACCATATCATCCAAATCCCCTTCAGGTCTGTCAGGTGCAACGAAAACAAAACCTAGAATTTCTACATCTTCCGG TAGCAACCTATCTGGTAGTATTGGTAAATCACTGTCAAATTCGTTATCTGGTAACATTGGAAAATCACCATCAAATTCCT TGAAAAGAAAAGTTGATGCTGGAACCAAAAAGCTCTCTCCTTCCTCAGTTGCCAGAACACCATTAAGAAATGCTTCAAGA GATAAAATTGGGTCTAGCAATTCTAGTCTTTCAGGCTTGATGTCTGTTACTAAACTCTCTTCTAGTATTTCTCCTGCTAG CTCTATTAGCAACTGGTCTTCAGAGTCCTCGTCATCAACTTCTATGGTTAAATATAGGTCTAATAGGTTAAGGACTAGTT TCGATAGTAGCTCTAGCAGAAAAGACTTATCAGATATCGATGCTCAACAATGTTCAAATTCTCAAAATCCTGAGAGTGCT TCAAGTGTAGAAAGGAAAAAGACTCAGCCTATCTTTCAGAGTGTAAGGACTGCTGCTTCAGGAATGGTTACTTCTCCATC TCCTCCTCAGAAACCTTCTCGCATTCGACTACCATCACCAAAGATCGGCTTCTTTGATGGCGTAGGTTTTGTATTGTTTT GTTGATATTTTATATTTTTATGAACTCATCTTTTCAGTACAATTTTCTTGGGGACATTCATGAAATGTGCTTCTGTTAAT TGTTTTTTTCCCATTAATACTTTCTTCATCTTTCCATTACCTCCCATTTGTTATATCGGTATTATTATGTTATGCAGGCA CGCACTCCTCGTCGGAGAATGCAACCACCCACTGCTGTATCACATAGCTTGCCCGGACATGGAACAGGAAGTTTCAGTCC ATCTCCAAGTGAAGGCCAAAACAAAACAAAGCTCCGAAAGCTGCAACCATCAGTCACATCAATTGATAACAAAAAATTCA ATGACCAGCATACATCGAATCCAGTTCCTCTTCATGAATCATTAGATGTTGCAATTAAGTCACCTACGGCATTGAAACAT GACAAAAGCTCTTGTGTAGCAACCATGGAAGTTCAAAATGAAACGCATCTTAAAGCTGGTGTAGTTAACTTGGACTCCAA TGATACCATGGCTGGAGGGAACCTTATACATGACCTGAATCTTGGTTCTACACAGGAAAATTCTCACTGTGATGATCAAG TTGATTGTTTGAGCAGACAAGTTGGACTTCTGGATATAAATTAGGAAGCACAAAGCATATTCTGGTATGCCAGTTTGCAG AAGGAGATACTATGATGTGAATGATTCCTTGGGCAATGTGGTGGCTTGGCAAATGCTTTCACAACAATTGTCTGAGAGCA TCATTACAGGAAAACTGGGTGATCAAAAGAAGTTAAACTATACATTCTTTGATTTTTTTTATATTGAAACTGAAATTGTA GAAGGTGAATTTTGATGTACTCGATCCTACTCTGGCTATTGAATAAAAAGATTTCATCATTATGAAGCACTTATTTTAGT TTGG
CDS sequence (LotjaGi5g1v0074900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATCCCATCTTCTAAGAGTCCAAGTGCTGTCATGCAAGGAGCAGGGAAGCTGACAAAGAAGAGTCCTATTTTTTC ACAACTTCCCGGGACGCCTGTTGCTAGTAGGGAAGAGCCGTCTATCTTAAAGCAATCAAAGCTACTAGGAAAGTCTACTC CAAGTTCAACAATTTCATCCAAGAGAGCTTCCCCTAGCAATCTGCATGTCAAAAGTGAAAATGACAAAGCAAAAGGATTA ATCGGTGGTAAGGTCAATTCCATGACTAGCACACCTGTTTTTAAGGGCTCTCAAGTCATTGTACCTAAACCCACCATATC ATCCAAATCCCCTTCAGGTCTGTCAGGTGCAACGAAAACAAAACCTAGAATTTCTACATCTTCCGGTAGCAACCTATCTG GTAGTATTGGTAAATCACTGTCAAATTCGTTATCTGGTAACATTGGAAAATCACCATCAAATTCCTTGAAAAGAAAAGTT GATGCTGGAACCAAAAAGCTCTCTCCTTCCTCAGTTGCCAGAACACCATTAAGAAATGCTTCAAGAGATAAAATTGGGTC TAGCAATTCTAGTCTTTCAGGCTTGATGTCTGTTACTAAACTCTCTTCTAGTATTTCTCCTGCTAGCTCTATTAGCAACT GGTCTTCAGAGTCCTCGTCATCAACTTCTATGGTTAAATATAGGTCTAATAGGTTAAGGACTAGTTTCGATAGTAGCTCT AGCAGAAAAGACTTATCAGATATCGATGCTCAACAATGTTCAAATTCTCAAAATCCTGAGAGTGCTTCAAGTGTAGAAAG GAAAAAGACTCAGCCTATCTTTCAGAGTGTAAGGACTGCTGCTTCAGGAATGGTTACTTCTCCATCTCCTCCTCAGAAAC CTTCTCGCATTCGACTACCATCACCAAAGATCGGCTTCTTTGATGGCGCACGCACTCCTCGTCGGAGAATGCAACCACCC ACTGCTGTATCACATAGCTTGCCCGGACATGGAACAGGAAGTTTCAGTCCATCTCCAAGTGAAGGCCAAAACAAAACAAA GCTCCGAAAGCTGCAACCATCAGTCACATCAATTGATAACAAAAAATTCAATGACCAGCATACATCGAATCCAGTTCCTC TTCATGAATCATTAGATGTTGCAATTAAGTCACCTACGGCATTGAAACATGACAAAAGCTCTTGTGTAGCAACCATGGAA GTTCAAAATGAAACGCATCTTAAAGCTGGTGTAGTTAACTTGGACTCCAATGATACCATGGCTGGAGGGAACCTTATACA TGACCTGAATCTTGGTTCTACACAGGAAAATTCTCACTGTGATGATCAAGTTGATTGTTTGAGCAGACAAGTTGGACTTC TGGATATAAATTAG
Protein sequence (LotjaGi5g1v0074900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIPSSKSPSAVMQGAGKLTKKSPIFSQLPGTPVASREEPSILKQSKLLGKSTPSSTISSKRASPSNLHVKSENDKAKGL IGGKVNSMTSTPVFKGSQVIVPKPTISSKSPSGLSGATKTKPRISTSSGSNLSGSIGKSLSNSLSGNIGKSPSNSLKRKV DAGTKKLSPSSVARTPLRNASRDKIGSSNSSLSGLMSVTKLSSSISPASSISNWSSESSSSTSMVKYRSNRLRTSFDSSS SRKDLSDIDAQQCSNSQNPESASSVERKKTQPIFQSVRTAASGMVTSPSPPQKPSRIRLPSPKIGFFDGARTPRRRMQPP TAVSHSLPGHGTGSFSPSPSEGQNKTKLRKLQPSVTSIDNKKFNDQHTSNPVPLHESLDVAIKSPTALKHDKSSCVATME VQNETHLKAGVVNLDSNDTMAGGNLIHDLNLGSTQENSHCDDQVDCLSRQVGLLDIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 372 | 372 | - | – | |
| PANTHER | 5 | 442 | 438 | 9.5E-54 | – | |
| PANTHER | 5 | 442 | 438 | 9.5E-54 | – | |
| MobiDBLite | 46 | 67 | 22 | - | – | |
| MobiDBLite | 84 | 158 | 75 | - | – | |
| MobiDBLite | 168 | 236 | 69 | - | – | |
| MobiDBLite | 245 | 292 | 48 | - | – | |
| MobiDBLite | 325 | 372 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0074900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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