Transcript — View — Lotus Base

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LotjaGi5g1v0079100.3

Overview

Field	Value
Gene ID	LotjaGi5g1v0079100
Transcript ID	LotjaGi5g1v0079100.3
Related isoforms 2	LotjaGi5g1v0079100.1 LotjaGi5g1v0079100.2
Lotus japonicus genome version	Gifu v1.2
Description	Cytokinin riboside 5'-monophosphate phosphoribohydrolase; TAIR: AT2G37210.1 lysine decarboxylase family protein; Swiss-Prot: sp\|Q8L8B8\|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3; TrEMBL-Plants: tr\|I3SIR6\|I3SIR6_LOTJA Cytokinin riboside 5'-monophosphate phosphoribohydrolase; Found in the gene: LotjaGi5g1v0079100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:12886580..12890089) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGACAACACACAGTAGTGAGATGAGGGTGGTGTCCAAGTTCAAGAGGGTTTGTGTGTTCTGTGGGAGTAGCCCTGG CAAGAAGAGAAGCTACCAAGATGCTGCCATTGAACTTGGCAACGAGTTGGTAACTACACATTCATTCACCCTTCACACTC CATCATTTTCTTTTGTTTCATTTTGGGTTTCTATTTCTATTTTTGCTTTCTTCCCCTGAAAATTATAGAAAAGGTTTGAG AGGAAATTTTTGAACTTCATGATATGACATGTCTTGAATATTGTATATCCATTGTGAATGTCAGCTGGGCATGTTCTTTG TGTTCATAACGTGTTTGAAAATTGTAACTTATTCATTGCCTTTGCATATGACATTCACATTGATTCCTTTTAAACTATGC ATTTTTCTCTTAGCTGAGTTCCTTATCTAGCATCTGTTTAATGCAAAATTTGCACTTTTCTTTCCCCCCCATTTGATCAT TTATCACAACCAAAAGTCTAAGGTAACTCAAGCCCAGTTTTTCACCTCTCTGAACTATGAGTATCCATATTTTTATCCTT GAATGTGATTTACAATTATCTGAGAAGCTTAGTAGCACTGAACTGAATACTTGGTACGGTTTTACATGTGTTTCCTCCTG ATTGAGTTTTAGAGAATCATTTTCAGTGCTTTTGTTCTTTTTTGCTTTTACTCTTTGGTTTCAAACAGTTAAACTGTACT CTTGCTATTGTTTTCTAAATGAGTAATCTTTTTTACATTTTCATTTTGTTTTTGACACCATAATTGTGTTAGTCACTCTT ATTTGCATTTGGTTACATAAGTCTTCATTATTTCTGAAGGTGTCAAGGAACATTGATTTGGTCTATGGAGGAGGAAGCAT TGGTCTAATGGGATTGGTTTCTCAAGCAGTTCATGATGGTGGTCGGCATGTCATTGGGTATGTGACCCTTTTATCTTTTT CTTGTTTGTTTTGGTAATCATTTTTCTTTCACTCTTTTCGCCAAAGATGTTGGGGAATAGGTGGATCATGAAATCAGAGC CAATTATGTTTATGTTGTTGCTGTTGGTCTTTTCCTCCATTGACACACTATGTTTGTCATGTTACTGTCTCTTGCAGAGT TATTCCCAAGACGCTCATGCCTCGAGAGGTATGTCTCAGAAAAAAAGCTTATACTCTTTTTCTTCTCTGTAATTACTGAA GTATTGCATGTTGTTTCTTTTTTATTTTATTTGTTTCTCTTCATCAAGGTTCGAGTTTGTTTTTGTTCTTTTTCTTCATT ATTTTCTTATTCCCTTTTATCATGAATTCTATATTCTATTCATGTATTCCCACTAGCTTTGTCCTGTCCTGTATGTTCAT TTTGAGTTAAGCCTTAACTCTCCCCAGGTTCAAATCAAGTTCAAAAAATGACATTTCACAACTTTGTTATTAAAGTTTGT TTATTTGACTAATGTTTGGGTTGTCTGGTTTCTACCTTTTATTTTCACCTTTTTCTTGTTTTGGTTTTATCTTTATATGC TCATTGTCACTGATTAGCTCTGTTCAGTGTCTTTTCTTTTACTTCATTGGCTTTTACTGAGCTAGAATTTTTCTTTTCTC TTCTTTTGCTTATTTGTTCTAATTTTCTAATCCATGTACATTGATCCTTTTGCAGCTAACTGGTGAAACAGTGGGAGAAG TAAAGGCTGTAGCAGATATGCACCAAAGGAAAGCAGAGATGGCTAAGCATTCAGATGCCTTTATTGCCTTACCAGGTTAG CCTGAACTAAGAACACTTTCCATGTTTAGATAAACGGCGATAAACCACGGTGATGCCAAAATCATGGTTGACAGTAGCAA AAGCTAAGAGAAGTTGCTTCTACCCACTGTAATTTTGGCTTCACCATGGTTTTCACCTTCTATCCAAACATGTACTGGGT TGCCTTACAAAAAGTAGAAACATCAAGGTGCTTCTAGCTTTCTAGTTTTGTCATTTACCATTGACCATATCTCAGTGTTT TATGCTATTGTGAAAAATAAGCAAACTGTTTTTTTCTTTGTTCTTTAGTTAAACCTTAGCTACTTTTTATCCACCAGTCA AGAACTGAATTTTTTTTCTGTTAAATTAAACCTTTTTGACTTGAACATTATTAAAAAGTTTACCATGCCTAATCATGAAT GTTGTTGAAAAGTCAAAAAGTATTAACTGCTGTGTCCTTGCGTGTGATTTAGAAGACATGTGTAAAAGAAAACGAGGACT GGTCTTCCACTTTGAACATAGACAAGTGCAAAGAAAGGAATCTTGTTGTTTTAAGGAGAACCAAATCAACTTGTGTGAGA GTTTTATTTATATAAATATAAACACTGCTACAAATTCTGTTTGTGACTTTTTTTCATAATTCATATATTCCAAAGCTGTG ATGATTAGAAAACGACCCTTCAAAGCTAGCTGAACCTGACCTCCCCTGAGCCCTTAACATCTTTAGCTAAAATGTTGAAC TGCTCGGAGAACCTGTGGTTCTGGTTGAATACCATTTATATCTTTACTTTCCTTAGAACCATGACGTATGTGTACCAAAC TTCATGCTTTCTGATAGAGAAGGGAAGTAAAGCTAGAAAAGAACTGTAACTGGATAGCATTATTTCCAACTAGCTCCTGT ACCTGACATGGAATAATGCTTTACAATATTCAAAGTCTTCTTTGTTTTTAGTAGTTATCATTCTGAGAGTAATTGAGAGG TAAAAATTAGTGACAGATAGGGGAATGCAGGCAGAGACAGTTGTGAATGACTCTCTATCTTGGGATCCCTCTTGTGAAAG ACAACTCAATAGATGAACCTTAACAACCATTCAACATGTCAAAATCATGCTTCTCTGTTGGTGTTTTAAGATTTGTGAAA TCATATTTACATATAACAAACATACACTAAATAGCATATACTACATGAACCAAGTGTAGAATAACTAATTTAAGTTCATG TTTGGATACATGGTTGAAAAGAAATTCCAAATTCTCTTTAAGCATTTTTCTTTTCAGTATCATCTCAATTATGAGCAGCC TATCCGGATATTTTCATCAAGTTTTGAAAAACTTATGTACGTTAAATGCAGGTGGTTATGGCACTCTAGAGGAGCTTCTT GAAGTCATAACATGGGCTCAACTTGGAATTCATGACAAACCGGTAATTGACTCGAACCACTTTGTTGTCGACCTATGTTA TCATCAATTAATTCACATCCCTTGAGTTTCCCTGTGCTATTACCCTAACTAGATTTAACATTCCACAAATTTCAGGTGGG GTTAGTAGATGTTGATGGATACTTTAATTCGTTGCTGTCATTTATAGACAAAGCTGTGGAAGAGGGATTTATTAGTCCAA ACGCCCGCGACATAATTGTATCAGCGCCTACAGCGAAAGAATTAGTGAAGAAACTGGAGGTAATTTTCATAGAAAATAAA TCAAGATTTCGTCACATTTCTATAATCAGAAGTACTTATATATGAACTGCATTTTCTTCTGCAGAATTAA

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0079100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGACAACACACAGTAGTGAGATGAGGGTGGTGTCCAAGTTCAAGAGGGTTTGTGTGTTCTGTGGGAGTAGCCCTGG CAAGAAGAGAAGCTACCAAGATGCTGCCATTGAACTTGGCAACGAGTTGGTGTCAAGGAACATTGATTTGGTCTATGGAG GAGGAAGCATTGGTCTAATGGGATTGGTTTCTCAAGCAGTTCATGATGGTGGTCGGCATGTCATTGGAGTTATTCCCAAG ACGCTCATGCCTCGAGAGCTAACTGGTGAAACAGTGGGAGAAGTAAAGGCTGTAGCAGATATGCACCAAAGGAAAGCAGA GATGGCTAAGCATTCAGATGCCTTTATTGCCTTACCAGGTGGTTATGGCACTCTAGAGGAGCTTCTTGAAGTCATAACAT GGGCTCAACTTGGAATTCATGACAAACCGGTGGGGTTAGTAGATGTTGATGGATACTTTAATTCGTTGCTGTCATTTATA GACAAAGCTGTGGAAGAGGGATTTATTAGTCCAAACGCCCGCGACATAATTGTATCAGCGCCTACAGCGAAAGAATTAGT GAAGAAACTGGAGAATTAA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0079100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

METTHSSEMRVVSKFKRVCVFCGSSPGKKRSYQDAAIELGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPK TLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVDVDGYFNSLLSFI DKAVEEGFISPNARDIIVSAPTAKELVKKLEN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.40.50.450 View details on G3DSA:3.40.50.450 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.450	4	192	189	4.5E-86	–
PANTHER	PTHR31223:SF44 View details on PTHR31223:SF44 Search for proteins/transripts with this domain View external data on PTHR31223:SF44	5	192	188	3.0E-119	–
PANTHER	PTHR31223 View details on PTHR31223 Search for proteins/transripts with this domain View external data on PTHR31223	5	192	188	3.0E-119	–
SUPERFAMILY	SSF102405 View details on SSF102405 Search for proteins/transripts with this domain View external data on SSF102405	14	191	178	6.72E-61	–
TIGRFAM	TIGR00730 View details on TIGR00730 Search for proteins/transripts with this domain View external data on TIGR00730	16	191	176	2.1E-61	IPR005269 Show description in modal box View details on IPR005269 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03641 View details on PF03641 Search for proteins/transripts with this domain View external data on PF03641	60	190	131	4.4E-46	IPR031100 Show description in modal box View details on IPR031100 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0079100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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