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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0088300 |
| Transcript ID | LotjaGi5g1v0088300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PLATZ transcription factor family protein; TAIR: AT1G32700.1 PLATZ transcription factor family protein; Swiss-Prot: sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808; TrEMBL-Plants: tr|I1L944|I1L944_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0088300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15061762..15064596) extracted from Lotus japonicus Gifu genome v1.2.
CGCTAACAAGATCCAAAGTAGCGTAAGCGCCAAGAACTTCTCTTTTCATCCAACGGCTCACATCCTTCCTCAGCCACCAC TTCAATCTCAACCCTCCAATTCTTTATTCACCCCCCTTGTCCCCATACATTATAGTCTCACCTTCTTCTTCTTGTGTCTT GTTCAATTCATAGTTGTTGAATTGAAACCCTGTTTACTCTCTCACCCTCTCTGTGATTCCACCATTATAGTCTTCACTCT TTAGAATCCATATCCCAATTTTCACTCAAAGCATTACATTGTCAATTCAATTTGTCACGTATATATGTTATATTTTTAAT ATGATATGAATTGAATGTTATGGATTCAGAGCAGGACACAATGTTGGTGCCTCCATGGCTCAAACCATTGCTTAAAACAC CTTTCTTCAATGTCTGTCGCATTCATGGAGACGCGGCGAGGAGCGAATGCAACATGTTTTGCTTGGACTGCAATGGTGAT GCCTTTTGCTTTTACTGCCGTTCCTCAAGGCACAAGGATCACCATGTCATTCAGGTAGATGTTGTTAAAAGCATTTGAAC AATGATGCTGATTTTTGTGATTGGAATTTGTTTCATAAGATCTTTATTTTTGTGTTGTTATTGGTTAGATAAGGAGATCT TCTTATCACAATGTGGTGAGGGTGGGGGAAATTGACAAGGTGTTGGACATTAGTGGAGTGCAGACTTATGTGATCAACAG TGCTAGAGTTCTGTTTCTCAATGAGAGGCCTCAACCAAAGTCTGGGAAAGGAGTATCTCACATCTGTGAGATTTGTGGTA GAACCCTCTTGGATCCATTTCGTTTCTGTTCTTTGGGATGCAAGGTGAGCTAGCTATTTCTGATTATTTAATTAATCCCC CTCTCAACATTGTTCATATCATTGTCAGAATTTGATTAATAAACAGCTCAAATCACCCTCATCATATGGGTATAACCCCC ACCGCCTGTTCATCATCACCTACATCAGAAAGCCAATCAACATATTAATTATATTTTACTGATGATATGATACTCAGGCA TACAAACAGTGTAGAATGTAGATATCTCATTTTTGTTTCTAGCTCCCTCTTCTATCATATATTACATCAATTACTTCTCT TTCATCTCTTTCTTTCTCACATTGTATGTCTGTTAGATGTTTGCACTCTTTGGGTATCAATCATCATGGGTATGTCTACC TAGCATATACATTGCCATTTTAGTACATTTTAATGACCATGACAATGTTAGTACTGATAATTACTTGATAACAGATAGGA ACATATCATAATGCATATAAAATAATCAATATATGATTGGTCTATTTTTATATATAGTTACTAATTATTCTGCTGGCAAT GATTGAATTAGCTTGTGGGAATAAAAAGAAATGGGGATGCAAGCTTTAACAAGGAGGCATTGGCAATGGATGGGATGTCA AGGAGATCAGTCTCTTCAAGACAGCATGAAGAAGAATTGCGTGAAGGATCACAAGAAGACATGTACCCTGACACGCCTCC TCCACCTGCTTCAAATGCAAGGAGAAGGAAAGGGATTCCTCATAGAGCTCCTTTTGGCTCATAATCATTACTTCCTTTCC CCCTAAAAATTGGTACATACTCAATATTTGGCCAGCATTTTTTATTTCTTTTGAAACAATTTATCCCCTCTTCGGAATCT TGTTAGTATAATTATTTATTTATGTGTCAGTAAAGAAAAAGAATGGTAGAGGCTTTGGTGGAGGGTTTCATTTGTCGAAT GTCCGTGAAGTTGGAAAGGAAAAGAAAGGAAAGGTATATAGGAAAGTTCCTTCTTTTGGAGGTATGGGTCCAAAACCAAC AATTCCTCCCTTGTGAAGAACCAATAATGCACACTTGTTTAATGTTTGATAGCTGCGAATATACATAATACATGTCATTA AGAAATCAAAAGCTAAAACTTTGTGTACTCTGTTTTTTAGTTTTCGATGCCCCACCATCCACATGGGCCGTTTACATCAA GTGTTCCACTTTCTTTCACATTGTTTTTTCAAGGGCAAAACTATCCCTACCACCCCTTAGTCTAAAGTCACCATCCTTTT TCAGTAATAACATTCATCATATTACATTGGCAATCTAAATTACACGTCACACTCTTATTTAGGTTCTCTCTGCATTCTAA AATGTGGTATGCAAAATTTAAAATACCTACCGTATTTTACAATTTACAACACGTATAAGCGGTACACGAAATTTACATTC TATATTCTAAAATGCGGTATGTATTCTTTCTCTGTTTCATACATGATGTCGATGAACTAAGCAATGTCAATCAATCGCCC AAAGAGCAAAATAACCACCAAGTGGTATCTCAAAAAGTGCCTGCAGCTTTGGAAAAATAACCCGCAAACAACTCTTTAAC ACAAAATAAAAGACAAGTTGAATCAGGCAGCAACTTAACACTCACCCAAGACCGCCATTGCTCCTTTAATTTTTCTTCAA GGCCTCAAATAGTCTCCTCGTCACTTCTATCAAACTCCAACCCCAAAATAATTAACTTAAGAATGATAAAATTGAAATAT GAGTAAATGCACAACTAAATTAGCCACTATAGAGGTTGTCTCGTCCTCTTTCCACTTCGGTGGTACCATCAAGGGATGTG AGATATACCGATACCACGTAGGTACTCTAGTACAACATGAGTGGGAAATACAACATGAATCCCCTGAGTAATGACCCTAG CGTCATATAATTCTCACATCCCGTCTGTCTCCTCACATGTAAGCCTAATTGTGGAAAACTTGAAGAAATAAATAGTGATA AATATGTTTTTGGTCCCCTTAAAATAGCGAATTGT
CDS sequence (LotjaGi5g1v0088300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCAGAGCAGGACACAATGTTGGTGCCTCCATGGCTCAAACCATTGCTTAAAACACCTTTCTTCAATGTCTGTCG CATTCATGGAGACGCGGCGAGGAGCGAATGCAACATGTTTTGCTTGGACTGCAATGGTGATGCCTTTTGCTTTTACTGCC GTTCCTCAAGGCACAAGGATCACCATGTCATTCAGATAAGGAGATCTTCTTATCACAATGTGGTGAGGGTGGGGGAAATT GACAAGGTGTTGGACATTAGTGGAGTGCAGACTTATGTGATCAACAGTGCTAGAGTTCTGTTTCTCAATGAGAGGCCTCA ACCAAAGTCTGGGAAAGGAGTATCTCACATCTGTGAGATTTGTGGTAGAACCCTCTTGGATCCATTTCGTTTCTGTTCTT TGGGATGCAAGCTTGTGGGAATAAAAAGAAATGGGGATGCAAGCTTTAACAAGGAGGCATTGGCAATGGATGGGATGTCA AGGAGATCAGTCTCTTCAAGACAGCATGAAGAAGAATTGCGTGAAGGATCACAAGAAGACATGTACCCTGACACGCCTCC TCCACCTGCTTCAAATGCAAGGAGAAGGAAAGGGATTCCTCATAGAGCTCCTTTTGGCTCATAA
Protein sequence (LotjaGi5g1v0088300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSEQDTMLVPPWLKPLLKTPFFNVCRIHGDAARSECNMFCLDCNGDAFCFYCRSSRHKDHHVIQIRRSSYHNVVRVGEI DKVLDISGVQTYVINSARVLFLNERPQPKSGKGVSHICEICGRTLLDPFRFCSLGCKLVGIKRNGDASFNKEALAMDGMS RRSVSSRQHEEELREGSQEDMYPDTPPPPASNARRRKGIPHRAPFGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 206 | 204 | 7.3E-120 | – | |
| PANTHER | 3 | 206 | 204 | 7.3E-120 | – | |
| SUPERFAMILY | 23 | 68 | 46 | 3.66E-5 | – | |
| Pfam | 67 | 138 | 72 | 1.9E-27 | ||
| MobiDBLite | 157 | 207 | 51 | - | – | |
| MobiDBLite | 163 | 179 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0088300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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