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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0089600 |
| Transcript ID | LotjaGi5g1v0089600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor, putative; TAIR: AT3G10040.1 sequence-specific DNA binding transcription factor; Swiss-Prot: sp|Q9C882|GTL1_ARATH Trihelix transcription factor GTL1; TrEMBL-Plants: tr|A7UQU9|A7UQU9_MEDTR Homeodomain-like; Found in the gene: LotjaGi5g1v0089600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15606391..15609029) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTTTAAATGTATTTTTTATTCAAATATAAATATGATATTTTTTTACTTATCATATCATGTCCTTATCATGTGCACC TCAAACACAGGATATGATAAAAGTCTATTCTGCTCTTATTATATCCTATTGTTATCCTATTCACATATCATATCCTATCA TATCCTATCCTGACCACCAAACGGATCCTAAATGTGCACATATAGAGAAACCAGTGTCCATGTTGGCGTTATGAAGCGGT GATGCTCCCCAGTTTTACACAAAACCTGTGGGTTTATCTTTCCAAAGCTACCCTCCCCACTCCAACAAAACCATGGGCAG TTTTTTTCTGTCCACACCAACAAAACCAGTTGCTTCACTCTCTCTCCACCTCTTTACTCTTTTTTATACCTTTTGTCTCT CTCAAACAACCCATTATATTCAATCATCACCTTCCATGTAACAAACCCCTTAATTCCTCTTCACCTTCTAGATAATGTGA TGCCACACCTTGTTCTCCCTCAATTTGGTTCATTTTCCAAATTTTTGATGACCCTTTTGTGCATTGTTCAACTATTTGAT TAAAAGGGTAACTGGGTAAGTTTCTTTTTCTCAAAGTTTGTTTGGCTTAGATTGTAGAAATAGGTTGTTGTTGGTTTATG TAGTTAAGGTGTTTGATGGAAGGCAATGGACTAGGTAGTGGAATGTTTTCTACTAGCATTAGTTCTGGTTTGCTAGGAGT AGAAAACAACAACAACCCTTTACAGCAGCAAAACCTCACCAATCAGCAAAATCCTCATCATTTGCATCATCCCCAGATGG TTTCTTATGACCAACAACAACAGCTACAGCAACCAATCAAACATGGGTACTCTCCCTATTCTTCAGCCAAGAACAAGCAA CAACAAAGCTCAATCAGTGATGATGATGAGCTTGGTTTCCCTGCTGATGAAACCTCTGGGGATCCCAAGAGGAAGATTTC ACCGTGGCAGAGGATGAAGTGGACGGACACCATGGTTAGGCTCTTGATTATGGCGGTTTACTACATTGGTGATGAAGCTG GTTCTGAAGGGACTGATCCCAATGGGAAGAAGAAGCAATCAGGGTTGCTGCAGAAGAAAGGGAAGTGGAAATCAGTGTCA AGGGCTATGATGGAAAAGGGGTTCTATGTGTCTCCTCAGCAATGTGAGGATAAGTTCAATGATTTGAACAAGAGGTACAA GAGGGTGAATGATATACTTGGAAAGGGAACAGCTTGCAGGGTGGTTGAGAATCAGAGCTTGCTGGACACAATGGACTTGT CACCAAAGATGAAAGAGGAAGTGAGGAAGTTGCTCAATTCCAAGCATTTGTTCTTCAGGGAAATGTGTGCTTACCATAAT AGTTGTGGTCATGGAGCTTCTCCTGGTGAAACACCTCAGGCTCAGGCTCAGGCTCAACCACAACAGCAGCAGCAGCAGGA GAATCAACAGCAACAGTCATGTTTTCATTCATCAGAGACTGCAAGTTTGGGTGTGTCAGGGGCAGAGGGATTGAGGATGA TGAAATTGGGAAGTGGGGAGGAGGATGAGGATGAAGAAGAGGAAGAGGATTCTGAGGAATCTTCTGATGATGATGAAGAT GAATCAGCAGAAGGTGGTTCAAGGGGAACTCTAGTTGATGAGGATGAGAATGACAATGGAAGGTCATCAAGGAAGAGGAC AAGAAAATCAGCAGGGTGTTCTGTTTCTGTGTCATCAACACCATCTCAATTGGTGCAGCAACTGAACACTGAGGTGAGTG GTGTGCTCCAAGATGGGGGTAAGAGTCCTTGGGAGAAGAGGCAATGGATGAGGAGCAGGATAATGCAGTTGGAGGAGCAG CAATTGAGCTATCAAACTCAAGCCTTTGATCTGGAAAAGCAAAGGGTGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAG GGAAATGGAAAGAGCCAAACTTGAAAATGAGAAAAGAAGATTGGAAAATGAGAGAATGGTTTTGATTATTCATCAGAAGG AGCTTGAATTGATGAATCTTCAACACCAACAGCAGCAACAACAGCAACATTCTTCCACCTAGAACTAGTGAAGATGATTT TTATGATAGATGAAATTATAGTTGTCAGAGTGTAGATGAGAGCAAATAGATGAAAGTGGTTGTTCTCTTATTGGAAATGT AAAACATAGCATGTTTCATGTTTGTGTCTACATAATCTAGAGTTCTAGACACCATCTTGGTCTTCAAAATTAGAACCAAG TTTTGTCCTTTCCCCCAACACTAAGCTTAATTAAAATAAGTTTCTTCCTTCCTCAAGTTGGATTTTAAATACTGAAGTTG CTTGACCCGAGAAATCAACTCTGAACTCAGTCAACTCACATTACATTTATGGAAAGAAAACAAGCTGTGAATTGCAGTAA TACATGTCTTGAAATTGCTATATGCACATTTTTTGACTTCAAAATTAGAACCAAGATTGTCCTTTCCCCTAGCACTAAGC TTAATTAAATGATAAATAAGACTCTCCCTCCCTCAAGTTGGATTTTAAATACTGAAGCTGCTTGACCAGAGAAATCAACA CTGAACTCACATCACATTTGTGGAATAAAAACAAGCTGTAAACTGCAGAAATACATGTCTTGACATTGCTAGAAGCACA
CDS sequence (LotjaGi5g1v0089600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGCAATGGACTAGGTAGTGGAATGTTTTCTACTAGCATTAGTTCTGGTTTGCTAGGAGTAGAAAACAACAACAA CCCTTTACAGCAGCAAAACCTCACCAATCAGCAAAATCCTCATCATTTGCATCATCCCCAGATGGTTTCTTATGACCAAC AACAACAGCTACAGCAACCAATCAAACATGGGTACTCTCCCTATTCTTCAGCCAAGAACAAGCAACAACAAAGCTCAATC AGTGATGATGATGAGCTTGGTTTCCCTGCTGATGAAACCTCTGGGGATCCCAAGAGGAAGATTTCACCGTGGCAGAGGAT GAAGTGGACGGACACCATGGTTAGGCTCTTGATTATGGCGGTTTACTACATTGGTGATGAAGCTGGTTCTGAAGGGACTG ATCCCAATGGGAAGAAGAAGCAATCAGGGTTGCTGCAGAAGAAAGGGAAGTGGAAATCAGTGTCAAGGGCTATGATGGAA AAGGGGTTCTATGTGTCTCCTCAGCAATGTGAGGATAAGTTCAATGATTTGAACAAGAGGTACAAGAGGGTGAATGATAT ACTTGGAAAGGGAACAGCTTGCAGGGTGGTTGAGAATCAGAGCTTGCTGGACACAATGGACTTGTCACCAAAGATGAAAG AGGAAGTGAGGAAGTTGCTCAATTCCAAGCATTTGTTCTTCAGGGAAATGTGTGCTTACCATAATAGTTGTGGTCATGGA GCTTCTCCTGGTGAAACACCTCAGGCTCAGGCTCAGGCTCAACCACAACAGCAGCAGCAGCAGGAGAATCAACAGCAACA GTCATGTTTTCATTCATCAGAGACTGCAAGTTTGGGTGTGTCAGGGGCAGAGGGATTGAGGATGATGAAATTGGGAAGTG GGGAGGAGGATGAGGATGAAGAAGAGGAAGAGGATTCTGAGGAATCTTCTGATGATGATGAAGATGAATCAGCAGAAGGT GGTTCAAGGGGAACTCTAGTTGATGAGGATGAGAATGACAATGGAAGGTCATCAAGGAAGAGGACAAGAAAATCAGCAGG GTGTTCTGTTTCTGTGTCATCAACACCATCTCAATTGGTGCAGCAACTGAACACTGAGGTGAGTGGTGTGCTCCAAGATG GGGGTAAGAGTCCTTGGGAGAAGAGGCAATGGATGAGGAGCAGGATAATGCAGTTGGAGGAGCAGCAATTGAGCTATCAA ACTCAAGCCTTTGATCTGGAAAAGCAAAGGGTGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAAAGAGC CAAACTTGAAAATGAGAAAAGAAGATTGGAAAATGAGAGAATGGTTTTGATTATTCATCAGAAGGAGCTTGAATTGATGA ATCTTCAACACCAACAGCAGCAACAACAGCAACATTCTTCCACCTAG
Protein sequence (LotjaGi5g1v0089600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGNGLGSGMFSTSISSGLLGVENNNNPLQQQNLTNQQNPHHLHHPQMVSYDQQQQLQQPIKHGYSPYSSAKNKQQQSSI SDDDELGFPADETSGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPNGKKKQSGLLQKKGKWKSVSRAMME KGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLDTMDLSPKMKEEVRKLLNSKHLFFREMCAYHNSCGHG ASPGETPQAQAQAQPQQQQQQENQQQQSCFHSSETASLGVSGAEGLRMMKLGSGEEDEDEEEEEDSEESSDDDEDESAEG GSRGTLVDEDENDNGRSSRKRTRKSAGCSVSVSSTPSQLVQQLNTEVSGVLQDGGKSPWEKRQWMRSRIMQLEEQQLSYQ TQAFDLEKQRVKWARFSSKKEREMERAKLENEKRRLENERMVLIIHQKELELMNLQHQQQQQQQHSST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 468 | 468 | 1.3E-212 | – | |
| PANTHER | 1 | 468 | 468 | 1.3E-212 | – | |
| MobiDBLite | 19 | 100 | 82 | - | – | |
| MobiDBLite | 19 | 83 | 65 | - | – | |
| Pfam | 106 | 232 | 127 | 9.2E-22 | – | |
| MobiDBLite | 128 | 147 | 20 | - | – | |
| Gene3D | 133 | 184 | 52 | 5.8E-8 | – | |
| MobiDBLite | 238 | 359 | 122 | - | – | |
| MobiDBLite | 241 | 279 | 39 | - | – | |
| MobiDBLite | 295 | 318 | 24 | - | – | |
| MobiDBLite | 319 | 340 | 22 | - | – | |
| MobiDBLite | 344 | 359 | 16 | - | – | |
| Coils | 389 | 409 | 21 | - | – | |
| Coils | 417 | 465 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0089600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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