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LotjaGi5g1v0092000.1

Overview

Field Value
Gene ID LotjaGi5g1v0092000
Transcript ID LotjaGi5g1v0092000.1
Lotus japonicus genome version Gifu v1.2
Description Trihelix transcription factor GT-2; TAIR: AT5G03680.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9LZS0|PTL_ARATH Trihelix transcription factor PTL; TrEMBL-Plants: tr|A0A151U3D4|A0A151U3D4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0092000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:16075562..16080505) extracted from Lotus japonicus Gifu genome v1.2.

ACACACCAACACACTAATGCTAATACAAATTTATAGTACTACACAGTATGAATGAAGTATAAACAGACAGAGAGAGAAAG AGAGAGTCTCCTACACAAAACAGTCTCATTCCTTCTCAATTCTCATACAAATATATATGATATACCACCATAACTCCATC AGCATACACTACACTTGGAGAGATGGGACCATCACACCACTGTCCTCAGCTCAAAATTTGAGCCCTTTTCCTTAACGACA GGATCCGACTCTGCCGCTTCTTCCCACTCCTCCTTCCAAACACACACTTCACCCTCTTCTTCTTCTTCACTTTCTTTTTC TCTCTCTCTCAACCCTAACCCCAACCTCTCATGGAAATGGAAGATCACCACCACTATCATCATCAACAACAGTATGACGT GGCCACTGATCTCAGAAACCTCGTCAACCTACCAATAAGGCCGACCCACTTCCCTTCTGTACCGCCACACCCCACGGCAG AGCTTTTTCCCGGCCACCGCAATCTAACCCCCGTACCCACTCCCCACCACCACCACCAACAACAACAACAACAACAACAG TATGAGATGATGATGTTGATGCCACGTGGGGTTCACGACTTCACCCCCACCATCACCACTACTGTTGCCGCCACCGCCAC CGCCAGTGCTTCAACTCCTCCTCCGGCCCTCAGTAGCAGTGGCTTTGATGCTGAGACCGCAGCTTGCTTCGGTGGAGACG CTTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTTCTTGAGGTCAGATCTCGCCTTGACCCTAAATTCAAAGAG GCTAATCAAAAGGGACCTTTGTGGGATGAAGTCTCAAGGTACAAATTCATCACTACTACCACTCCCTAATAGTTACATTT TTTTCTCCTTTTTCATCTTCAAAAGTAAATTCAAAAGCTGCTTATAAAGTTTTTTTTTTTTAAAGATCATAAAATTTCTG AGAACACCTTTCTCAGATAAATTCAATATGAAGAAAATCCTCCAACAATCATATAAAAGAGTTATAATTCATTCACACTT TTCCTCAGTATTCACTCAAACAATTATAAAAGGGTTTCAAATATAACATCTGCTTAATTACTATTGTTTGATTCTGGCTT CCCACTAGGAGGTTCAGTCATGTAATGAATTGTGGCATCATTCACAAACACAAGGTAATATTAATTTTGGGTGATTTGTT TGGTTCTAAAAAAAAATGAAATTTTATAGGACGACAACCTGGTAAGTTGCTTAATTGTTTTGTAAGATGACATGACTGCA CTCTGGTCGGTGTTCATTTGGTCGATGTGGGATTTTGGAAATTTGATACATATATAGCTAGCTGCATGTGATTTTGTTTA GTTTTTCTTTTTAAGGTTTGGAAAATGACCATATGGTGAAGACTAGCTGTTTGATTAATTTTATCTAATCAATTTTCTAG TATTGGTCGTGCACTTCGAAGCATTTGACTTTCCAATATTACTGGGTTTAGGACGGTTATAATGCTGTCTTGTTTTCCTG ATTTGAAATTGTGTTCCCCTCTTAAGTGCAAGTTTCACCCTTTTACTATTTTCCTTATTTAATTTGAAATTTATTGACCA TACCGATGCCTTTGCTGCCTCTTCTGATTCCATCGTATGAAATGACATCAACATGAGGCTCTTCCTTCGAAACCTCATCT CTATGGCAATTGAGTTGTCGTGTGCAAAGTTGTGTTTGCCATAGCAAGAACATGAAAACGTAAGAGCATGACATTGCATA GAATTGGGTAATCATTTCCTCTGTCATTTGAAGGCGTCTTGTGTCCCCTCCTTATAAAACACATTATTTATGAAAATCAC AACAATGGAGTATAATCCTCGAATAATTTTAGGTAGTAGGTTGAGTGTAGATTTAAAGTGAAAAAAAAATAGAAGTGATA AATGCAATATATAATATAAATGTGTCATGAAAAAAAAAAGATAAATAGGTATATGAAGTTTTTATACACGAATTTAGATT CTATGCAATCTATGTTGCCTCTAAAACTAATAAATTGTTATAAACACTTCAGTTTAATTAGTTATTTACTTATTTAAATT AATTCTAGCTTGTTTTTTACGAAGTTTGGCTGGGTTGAGTTCCGCTCACAACTATAGAGAGAAAGGGGTATGTAGAGTGT TTATAACTATTAACAAAGTCTAACACAACTGATAGATGATTGAGTTCCTTAATTAATTCAGAATTCAATCTTTGGGCGGT GCATATGGAGAAAGATTTGTCGGAAAATACCTACCCACTTAAGGTGATCTCTTCGAGTCTCAAATGGATTAGTCTTATAG TTGTGGATTTTAGGGTTACAGTGTAAAACCAAAAAAAAGTGTTTATAACTAAATTCAAATTGTCTGCAACCTATTGTTAG GAGAAAGTAATGTCAGGAAAGGTGGGAGAAGAAAAGAAGAAGAAGACAGAAGAGAAGGGGAGCTTAAGCGTGCTATGGTT TACATTTTAAATAATTGATCGATTAAAAGATAAAATACCCCATATTTATAATAATGAGTATACGTTTCCTTATGATAGTT CAAGTGGTAGGAGGTAGGGAACATACGAGTTGGGTAGGGGAAAGTCCAGAGATCGACTTTTGACAGGTGCAATTAATCTT TCGATTGTACCAAAAAAATAAAAAAAATAATGAGTATACTCCTAATCATAATTAAATAAAGAAACAAATCAATATAAAAA AATCTAAATTACCTAAAATAACATCACGATATTATTAGATATTTTTACATATTCTAACACTTATGTTGCCTCTACTGCTA AAAATTTACTATAAACTCTTTAATTTAATAGGGTGTTTTTTATTTAAATTAATCATATCTATTGATTACAAAAGTCAATA GTCTATAGTTGTGCAAGAGAATGTTGTAGAGAACTTCTGCTGCAACAATTTGTAACCTTCTGAAAATTTCTTAAAAGTGT TTTGTTGGGACTCTATTTCCACTTATATCAAGGAAGAGAATAGAGAAATGTGAGATATCAGAGTTATATGATAGAAAAAG AAGTAAGAGATATGAAAAGAATGTGAGTGAATTAAGATAAAGAAAACGTAGTATATGATTGAGTCAAAACTCTCAAAAAC TAAATGCATTTAGTATTTTGAAAATATACGAAAAACATTTAATATGTTAAGAGAGTTTATATATATGAGGATATCATCCT TGATACATAAACACTCAAGATTTTTTCACTCAATTTTTAAACACTTAATTTTATTTCTATCTCTTTCCGAATTTCCTATC ATATTACATATCACATTTCATACTTTATATCTGTTTTACTTCTATCTCTCTCATTTCGGCCTCCACCTCTTTTCCACTAT GTGTCAACACAACATTATTCATGAGGATATGCACTAATATTAATGTTGAAAGCTCATCATCACATGGGGCTTCTAACTGG GGCTCTATAGTATTCTATATATCCTCACTTCTTATTAGCCTTTTTCCTGTTTTAACTTTTCTTTTCTTCCACTTTGTTTT GATTGTGTTGATGATCTCAGGATCATGTCTGAGGAACATGGATATCAAAGGAGTGGGAAAAAATGCAGGGAGAAGTTTGA GAACCTCTACAAATATTACAAGAAGACAAAAGAAGGCAAAGCAGGAAGGCATGATGGGAAGCACTACAGATTCTATCGCC AGCTTGAAGCCTTATATGGAGAAAACAGTACTAACACTGCAGGCTCAACCCTTCATTTCCAAACAAATCAAGAAATGTTT CAGACTCATCAGAACAACAAGCATTGTGATACTAGCACCAGCCTCACTAACTCAACTGAATTTGACACATCTTCATGTGA TGATGATGACAATGATCATAGCATTGAAGAGAGTGAGTGTATGAGGAGAAAGAGGAGGAGTAGGAGGAGCTGGAAGGTGA AGATAAAAGAGTTCATTGATTTACAAGTGAAGAAGCTGGTGGAGAAGCAAGAGGAGTGGATGGATAAAATTGTGAAGACA ATGGAGGAGAAAGAGAAGGAGAGGATTATAAGAGAGGAGGAGTGGAAGAAACAAGAGGAAAAGAGGTTAGAGAGGGAGCA AAGGTTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTCTAATGGAGGCTTTGCAAAATGTAACAGGAA GTAGTTTTCCCTACAATAATAACAATGATCATCAATCTTGTCTTCACAATCAAGGAAGTAACTATTGTGATATCAATGAT CAAAGGAAGGAGAATGTTGGGAAGGCGCAAACAAGTGATGGTTCTTCACCTTCAAATTTCAATGTGGGGAATGTTGCTCC TAATGATAGCTGTAATTTTCCATTCTTGATGAGTGAGGGAGGAAATTGGTGGGATAGCTATGGGTTAAAGCTCAGTAAAG CAAACCAAAACCAATGAGGGAAGGCTCAGTAAATCTGGTGCTATGAAGATAACATTATGCGCGACGTTCAGGTAGGACCG AACTCATTTTGTGAATCTAATATAGGCAGGTGGGTGACTCGTAAGAAGCACAAAATTTTGAGGCTGTTTATCTAAGGATG TCTCACATGTTATGTATGCAAAAGCTAACTCAGTTTATATATATATGTATAGAGGTTGATGACTAAGTGATCAATTTGAA TGTATTTTAGTTATAATGAGCATCTTTGGAGAAAAAAAAGTGTTCAATATTAGTGACAGTGATGAAATGGCAAAGATCAA TTTTGCATATTGGAATAGGACACCAATTCGGGTGAGTTTCCTTTTCTTTTATGCATATGCAAATGTAATTAAAATTGTGT TGCTTTGTGTGCTGCACCTTTATAATAATGATGTTTACATCTGTTGGTCACTGTTTTTCTCCTTCCCTCATTATTCTTTT TGTGTATTTTGGGACAAGCAGTCCAGGTTTTTGGTGTTTTTGTACTAAAGGTGTGTAATTGAGG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0092000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAATGGAAGATCACCACCACTATCATCATCAACAACAGTATGACGTGGCCACTGATCTCAGAAACCTCGTCAACCT ACCAATAAGGCCGACCCACTTCCCTTCTGTACCGCCACACCCCACGGCAGAGCTTTTTCCCGGCCACCGCAATCTAACCC CCGTACCCACTCCCCACCACCACCACCAACAACAACAACAACAACAACAGTATGAGATGATGATGTTGATGCCACGTGGG GTTCACGACTTCACCCCCACCATCACCACTACTGTTGCCGCCACCGCCACCGCCAGTGCTTCAACTCCTCCTCCGGCCCT CAGTAGCAGTGGCTTTGATGCTGAGACCGCAGCTTGCTTCGGTGGAGACGCTTCCACTGGAAGATGGCCCAGACAAGAGA CTCTCACTCTTCTTGAGGTCAGATCTCGCCTTGACCCTAAATTCAAAGAGGCTAATCAAAAGGGACCTTTGTGGGATGAA GTCTCAAGGATCATGTCTGAGGAACATGGATATCAAAGGAGTGGGAAAAAATGCAGGGAGAAGTTTGAGAACCTCTACAA ATATTACAAGAAGACAAAAGAAGGCAAAGCAGGAAGGCATGATGGGAAGCACTACAGATTCTATCGCCAGCTTGAAGCCT TATATGGAGAAAACAGTACTAACACTGCAGGCTCAACCCTTCATTTCCAAACAAATCAAGAAATGTTTCAGACTCATCAG AACAACAAGCATTGTGATACTAGCACCAGCCTCACTAACTCAACTGAATTTGACACATCTTCATGTGATGATGATGACAA TGATCATAGCATTGAAGAGAGTGAGTGTATGAGGAGAAAGAGGAGGAGTAGGAGGAGCTGGAAGGTGAAGATAAAAGAGT TCATTGATTTACAAGTGAAGAAGCTGGTGGAGAAGCAAGAGGAGTGGATGGATAAAATTGTGAAGACAATGGAGGAGAAA GAGAAGGAGAGGATTATAAGAGAGGAGGAGTGGAAGAAACAAGAGGAAAAGAGGTTAGAGAGGGAGCAAAGGTTTTGGGC TAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTCTAATGGAGGCTTTGCAAAATGTAACAGGAAGTAGTTTTCCCT ACAATAATAACAATGATCATCAATCTTGTCTTCACAATCAAGGAAGTAACTATTGTGATATCAATGATCAAAGGAAGGAG AATGTTGGGAAGGCGCAAACAAGTGATGGTTCTTCACCTTCAAATTTCAATGTGGGGAATGTTGCTCCTAATGATAGCTG TAATTTTCCATTCTTGATGAGTGAGGGAGGAAATTGGTGGGATAGCTATGGGTTAAAGCTCAGTAAAGCAAACCAAAACC AATGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0092000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEMEDHHHYHHQQQYDVATDLRNLVNLPIRPTHFPSVPPHPTAELFPGHRNLTPVPTPHHHHQQQQQQQQYEMMMLMPRG VHDFTPTITTTVAATATASASTPPPALSSSGFDAETAACFGGDASTGRWPRQETLTLLEVRSRLDPKFKEANQKGPLWDE VSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFYRQLEALYGENSTNTAGSTLHFQTNQEMFQTHQ NNKHCDTSTSLTNSTEFDTSSCDDDDNDHSIEESECMRRKRRSRRSWKVKIKEFIDLQVKKLVEKQEEWMDKIVKTMEEK EKERIIREEEWKKQEEKRLEREQRFWAKERAWIEARDAALMEALQNVTGSSFPYNNNNDHQSCLHNQGSNYCDINDQRKE NVGKAQTSDGSSPSNFNVGNVAPNDSCNFPFLMSEGGNWWDSYGLKLSKANQNQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21654:SF60
17 375 359 2.2E-164 –
PANTHER
PTHR21654
17 375 359 2.2E-164 –
ProSiteProfiles
PS50090
121 186 66 7.108
IPR017877
CDD
cd12203
128 193 66 3.44614E-21 –
Pfam
PF13837
128 214 87 1.9E-19 –
Gene3D
G3DSA:1.10.10.60
129 192 64 1.9E-23 –
PANTHER
PTHR21654
372 449 78 2.2E-164 –
PANTHER
PTHR21654:SF60
372 449 78 2.2E-164 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0092000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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