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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0101700 |
| Transcript ID | LotjaGi5g1v0101700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT3G11600.1 E3 ubiquitin-protein ligase; Swiss-Prot: sp|P10582|DPOM_MAIZE DNA polymerase; TrEMBL-Plants: tr|A0A072VKL8|A0A072VKL8_MEDTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0101700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:18288881..18290494) extracted from Lotus japonicus Gifu genome v1.2.
TGGTGTGATCTCTCGTGCTGTTGTGTTGAACCTTAAACACCGACTCCTCTACAAGCAATGAATGAAGAAAGGCCCTCACC CTGCACTTTGTAATTGCAATATTTACTACAAATTTCCCCATTCTGCATACTCCTTGGGATTTTTCCACACAATTAATACA TTTTCTGGCCACAATTTACACTCTTCTTCTACCCAACAATTCAATTCAATTCCATCACTTTTTTTTTCTCTCTCACTCTT CTCTCTCCTCATTCATCCTATTCCCTCCTCCACCTCTCTCCCACAATTAAATTAAGCTTTAAATCACCCCCTTCATTTTC CTTATATAAAATGGCCTTCAGCCTTCAACCTCCAACACCTTGCTCGTGCCGGAGCTTGTTCTGCTTCATGCTCTCTCAGT CTCTTTCAGGCCTGAATTAGCTTTCGCAACAACTTGCTCCTACAAACTTCTCTAAGGTATACTTTTTTCCTCAGAATTTC AATTTTCTCTTTCTTTTTTGTTTTGTCACGGAACACCACCTATGCTTTGTCGTATAGAGTTCGATAAATTATCAAAACCC TAAACTCTAAACTCTAAACATGAAACTGGTAAGTATCTTTAATATGGATCATCATGTGATGCATATTGCCGACCTCACTG AATAGCTTAATAGAATAAAACTTGTGTTTATGTGTTTTGTTTTGTGATGGAATTGGACTCTTTTTATGTTGCTTCAAATG TTTTGTGTCAAAACAGGTAATTAAGTACTTTTTGCAGAGGCAACAAAACAGAACCATGAGTCACAGGAATGGAAGTGGTC CAAAGCTTGAGCTGAAGCTGAACCTATCACCACCAAGGGTTAACCATAGAAGATTGGAGTCGTCACCGAACCGGTCAGCG ACGGTGTCGCCGACATCACCAACAACCTCTTGTGTCTCCACTGAGCTGAACCAAGAGGAAGGAAACAACAACAACAACCA CTCAACGAGCCCAGAAGAAGCCACTTCCATGGTGCTAGTAGGGTGCCCTCGCTGCCTCATGTATGTCATGCTTTCTGAGG ATGATCCCAAGTGCCCCAAGTGCAAAAGCACTGTTTTACTTGATTTCCTCCATGACAACAACAAAAGGAAGAGCTAGAAG AGGAGGAAGAGTACCCTGTTACCAGTTCTGCATTCTCTGCTGCTAGTAGGACATGTTAGCTTTTAACCTAGGAATCAAGA TCTTTCTATTTTCTCTTTTTCTTTTGTTATATTTGTTAGCCTTTCTATGAGTAGTGCTACTTGCGCTCCACTTCTTGCCT TTCTTTTCTCAGCAAAATCAGAATTTTTTGTCAAAAGCAAGAAAGTGAGAGATAGAGTGGAGCGTGAATAGCACTGTTCT AGCTATTATTTTATATAAAAAGATAAGTTAATGAAAATTTTGAGAATGCTAGGAATCTATGTGACTCCTCTATCTGGAAC TGGTTTTTTCAGATTTCCTGCTTTTTTAGCAGCAACGTGTAATAGGACTTAACCTCTCAGGTGCCCTACTAGTTTGCTTA ATGAAATTCTAGGTGAAATCAAATCAACCTTGGTATGTTTTTTTCCCTTTATCTTCACTCTGTTTTCTTTCTCTCAATGA TATTACTGTTTCAT
CDS sequence (LotjaGi5g1v0101700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCACAGGAATGGAAGTGGTCCAAAGCTTGAGCTGAAGCTGAACCTATCACCACCAAGGGTTAACCATAGAAGATT GGAGTCGTCACCGAACCGGTCAGCGACGGTGTCGCCGACATCACCAACAACCTCTTGTGTCTCCACTGAGCTGAACCAAG AGGAAGGAAACAACAACAACAACCACTCAACGAGCCCAGAAGAAGCCACTTCCATGGTGCTAGTAGGGTGCCCTCGCTGC CTCATGTATGTCATGCTTTCTGAGGATGATCCCAAGTGCCCCAAGTGCAAAAGCACTGTTTTACTTGATTTCCTCCATGA CAACAACAAAAGGAAGAGCTAG
Protein sequence (LotjaGi5g1v0101700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHRNGSGPKLELKLNLSPPRVNHRRLESSPNRSATVSPTSPTTSCVSTELNQEEGNNNNNHSTSPEEATSMVLVGCPRC LMYVMLSEDDPKCPKCKSTVLLDFLHDNNKRKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 110 | 110 | 5.3E-51 | – | |
| PANTHER | 1 | 110 | 110 | 5.3E-51 | – | |
| MobiDBLite | 1 | 67 | 67 | - | – | |
| MobiDBLite | 23 | 67 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0101700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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