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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0107300 |
| Transcript ID | LotjaGi5g1v0107300.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | polyketide cyclase/dehydrase/lipid transport superfamily protein; TAIR: AT5G06440.2 polyketide cyclase/dehydrase/lipid transport superfamily protein; Swiss-Prot: sp|Q85FM8|RPOC1_ADICA DNA-directed RNA polymerase subunit beta'; TrEMBL-Plants: tr|K7LI37|K7LI37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0107300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:20406642..20413159) extracted from Lotus japonicus Gifu genome v1.2.
AGGCAAGGGGCATGTGGATCCGTCTTGGTACTCTCACTTCAGCTGACTCTGTCTGGGATTGGATCAGTGTTCGAGATCTG TCATTTTTCTGATACAAGGTTCTTCTCAATCTCCACAAAATCTGAATATTCAATATCACTCACTACTCATGTATATTTCT TCGCCACTTTTCAATTAATTTTTCCATCATTTTAAGCTGGACTGGAGTACTTTGATATCAACCACATCTTTTGATTGATT TTGTATGGGATTTTGACTTGAAGCCTATAATAATCTGGTCCTTGTTTGTCAATTTTACTGTAAACATAGTTATGCAGTTT CATTTACTTGCCCAAATTTTCTAGGGTGTGAACTGTGAGGTAACTTTATCTATTTTAGCTAGTTTGCCATGTTAATGTTC TGTTAATGGGTTAATTTTGTTGGTTTCTGTGATTTGCTTTCATGTGTGATGGCATGAGAATTATACCCGAATGGCGCGTT AATCTAGTTTAACCATATTGAATTTCTATTGTGATAGATTCAGGAGAAGAATAGGAATCGCCATCATCGATAAATGGTTG ACGCCTGAATTTCCCAAAGAGATGCAAAGATGGAGAAGAAACGGAAGATTCTGCAGTACAGGGAGAGGCTAGATAGGACC CTTGCCTCACCTGATCTTACAAATGATGAGAAACTCAAAAAGCTTGTCAAAAGCCAACTCCTACATTCATCAGAAGTAGC AGGTGGTAACATTTCCTAATTTCCTTTGAATTCATTTAGGTAGAAATGGTAGTAGCTTAGAGGAACAATTGTTTTAGTTA GTTAACTTTGTCCTTTTTTCTCAATGCTTGGTTTGTTCAGGATATGAGGAGAAAGTAGTAGAAACCAAGACTGCTGAGGT ATCTAGCTTTCTTGATATGCTGAGGAGTGCTTCCGATGATTGTGGAAGATCTAATACATCACACACTGATTGGAAGGTAT GCTATGTACTTATTGCAGTTTCACCATTTTTATTTTCTTGCGAAACTTTTTATTTCTTGCTCTGTCATCTTCATTTTGTT TAGATCCTGAACCCTTTTTTGTTTTACATGTCTAATTGATAATGTTGAGAAGTTCCACATTGACCAGAGATTTGACAAAA TAAATCCTTATATAGGGTAGAGGAGTCCGCACCTTAAGCTAACTTTTGGGATAGAGTTAGGCCTAGCTCAAAAATCTAAG ATAGTATCAGAGCCTATCATATGTCCGTTTATTAGGCCACCCGTAATTGGGCCACCCATAGATGTCCAGTCCTGCAAGCT TCCTGCTCCAGATGTCAAGTCCTGGGCATGAGGAGTGTGTGTTGCGAAGTCTTACATTGATTAGAGATATGGCTGAATAC GGCCTTATAAAGAGTAGAGCAATCCTAAGGTTCAACCCAAAATTCTAAGAGATAAGTTCCACAGAAATCAGAAATTTCCA TTATATGACTGACTTCGTCGGCTCAGTGGCTTTTGTCCAACAGTAACTTATTATTTCAAATTCAATGGGCAAATGAAACT CCATGCCACATATGTTGCCTTACATCAATTATGCTTTGCATTGGAGATATTTGATTTATTTTTCAATTAATAATTGATTC ATTTTTATAATTTCACTTCTTTCAACAGTTAAAACAGGACAGTGAAGAGTTCCGCGTTATGTATCGTGAAGTACCCAAGG GATCACCGTTTCATACATTGCTATTAGAAGGCTTCGTGGATGCCCCTGTTGATGTCTGTAAGTGACACTGGACAGCAACC AAAATTTTTAGCACCAGCTTTTCGTTGATAGCGGCTATATTATTGGTTTCAACGTGCAAAATCTAATCTGTTATTTTCAT CATTACAGGTTTATGTATCTCATGGCAGACATCCCTTTACAAAAAATGGTGAGAATTGTATTTTGTGAAATAAGGCCTTT AATTTTCTGTATACTAGTCCCAATACAACATTGAACAGTGCTATCATTTTCGCATCAATTTCTGTATTAGGCTCAAAGTT ATAACATTCAATGGGGGGTAAAGGAACAGCTTTATTTTGGTGTGTTTTCTGGTGCTGAGAAAATGACCATTGACTACTAT TTTTTTTATGTGGCGGTCCTGAAAGTTGTTTCTTTCCTTGCAAATTCCTTATCATTATAAAAATGCAAGTGATATTTCTA GATGACACCCCTTTCACAATTTTCATTTAGGTGGCCTCAGTCTACTATTCCCACTTTCAAAATCTTAACATCCGAATGTT TGGACAAGGACCAGATTGCAGAACAAATATCACTAGTGAGGTTTGTCCTGCTGGTATCAATTTTAAAAATTATCTCTCTT AAGCCCCATTTCATGCTCAAAGTTTTCACTTTTGAAAGCTGATTTTTGCTCTGAATTTTGGAAGAAAGGATGAAGGTTCC ATGGCCTGCGGCTGTCAGGGAAGCTGTAGTGCACTATAACCTGTTTGAGTGTTTTCAAGATGACTTAATTGTTGTTCTTA CAAATTCGGTAGACATCTGGAACCTTCTTTGTTTTTTGCTTTAGAGAAAGTTAATTCTAATCTAGATCAATGGTTCAAGG GATTTTTGTGCTTGACTTGTTCTCAGATGCCTGAGTCAAACAGTGGCATCGGGAACCTCTGGGGTTCCAAAAATGAGGCA ATTCCTGAAGCAAAGGATGTCGTGAGAGTTGATCTGGTGGGAGGCTTTGCTTTACAAAAGGTGACATCAGAAAGAAGTTA CTTTCGGTGAGTTTTAGGTGCACATAAATATAAGAGTTGTGTTCGAAAGTAAAAAATAAGAATTTACTTGAATGGAGTGA TGGAATGAAATGGGAAAACAGTAAACAATCATACAAAATAATACCCCATATTGGTTTTGCTTGTTTTAAAAAAGAGGTGA ATACAAATTGGTTATATTTCTCCATCAAAGCCTAGTGAAGAAGATAATTTTGCGTACTGATTTGGTCAGTGGACTGTCTT ATCTTTAAGAAATGTTCTTGAGCAGAAGCAGAATACTAAGCACTTAACTGTCGACAGTAGACATGTGATACAAATATTTG CAAAATTCATGACACTCTATAAATGCACCTGCATCCGTGTATTTACAATATAAGACAGTAAAGTAATGGTATCTGATTCC CTTTTGTTTGTTATTCATTGTAGAGAGAGGTTATAAAACATATGAAGCCAGTTTTCCCATAGAGAGGAGTGGAAATCTGT GCATTTTCCCCTTCATTATTTGAAATGTTAATTTAAAAATAATCATTAGTGCAGATTTATGTCATTTATTTTTCATACAT GTAATCAGAATCAGGATGTCTGTACATAGTGATAGTTCTGTTGTTAGGCCTGCGGTCACTTAAGTCTACTCTAGGAAGGC CAAGAGGTCTTGAGTTAGTAATTAGACTTAAGTTAGTTAGGAGTTCGTTGGAAGTCAGGATATAACTAAATAGAATTGGG GGGGGGGGACAATTAGTTAGGTTGTTACTTATTTGGGAGAGAGTAGAGCCTCTTGAATGCTCTACAACTGCTGTAACCTT TCTCTCTGATTCCACAGTTTGTCTACAATGGGCAATTGGGGAATTAGGGTTCCAATTGAGTAATATTCTCAATCTTTCTG TTATCTGTGTCTATCATATAGGTACCACTGTACAGTTTATTGTCTCAATCTCTAGTCAAATGGACCAGAACTTCTCAATT CTGATAATGTGCTATAATCCTCTGAAAGTAACTGAAGTTACTGCTTTTAAATTTGTCCTCCGGTTTGGATATTTGGAGCT ATAAATTAATAAGAATAACATTCCAGTTATTAGCAAATTCTGACTGTGATGGGTTTTGAATTTGGGGGGACCAATAGTCA AAATTTTCTTACTTTAATTTTTGTTTGTTATTTGTCCAACCTTTGCATTGCTGGTGTTTCTGTGAATGGTAATGTAGCTG GTTTAGTCTGTGTTTGGCTTTCACCATGAATGTACATTCAACATCTTTGGAAATCGGGATTTAGAATCCCATTATTACAA ACATGGAAGAAAGGTTTACTATTCGTTGACATTCGTTTGAACGTAAGTTCAAGCACACCCTTAATCATTCTGTCTAAAGT GGCTTTCCTGGTTCCCATTGGTTGCTTGTCTCATGTGTTTCAGCTTTCTATTATAAGTTTATGTAGTCATTTTTTACAAG TTTCTGAATGGAATAGTAAAGCAAGCTGGTTGTGCAGATTAACTGTACGGCTTGACTTTTCAAATTGAAGTGAAAAATGA AAAAGGCACCTCAGAAAATGGATTTTTAATTAGAAATCCTGATTCAAGATTTCATATTTTGTAGGACAATAGCAAATATG GATATGAAGCTGGGTATTGTCCCTCCATCCTTGATAAACTTTATTTCAAGGCAGCTCATTGGCAATGGTTTCAAACTTTA TAAAAAGGTTGCAGCTTCCTTTTAAATATACTTTTGTTAGACATTCAACAAAAATGTATTTTTCTTTTCTCGGTCTATAT AATGAATGATATATCTCACTATAATGAAGAAAAAATAAAGGTAAAATGTAAATGCAATGGTATATTACTATATTTTATTT TGTGTTACATTCTGATAGGAACTGGATATGGTTGCTGAGTAATTGGAGAGGCTCAGCCACTCTCCCTAAGCCCCAAATCA TCCAAAAGATACCAGTTCTCACCCTAAACTATCTATTTATAGGCAACATGCCTCACACACTAATCCACCCACTAATTAAC GGCTTCACTAATTGGGCGTGTCTAACACATTCTATAATCAAATCATCTACCCTTTGTATCATTTTCATCTTTACAACACC AAGCAGTAATTATAGTAGTATGGTAAAATTTTCCTTTTATATCACAAATTATCCCAAGCATTCTTTCAGTTTTTCCATCC TACTTAAATCCTACAATTTAAAACTTCCTCTATCTTTGCACTATTTTGTGCGGTGGGTTCACGGTACTTAAACTGTTAGA CTTGGTGTCTGGTATATTCTTTAGTTTTCATCTAAATTAGAATTTAGGTACCTTTTTCTAAACTTATATTCCATATACTC TTTTACTTCTGCTTAAGCGGATATCATATGTGACTTTTCTCCATTTATCTAATTGACATGGATTCGCTAATTATTACACC CACATAGATTAGGATTTACCCTTGTTTTGTGAACTCAGTCTATTTTAATTGCGCTGCCTAGTTTGAAAGTTGGATTCTGC TGATTTGTCATATTTTGCTCCATTGTGCTTATAAAATATAAATGTAGAACATCCTTGCACTGTTTTCTATCATGTTTTGA CATTAACAAACCCCTAATTCTGTTGTAGACTGTGGCTTCTATGATGAGCCACGAGGAAGAAGAATTCAGCAAGGCATTGG AGGACCCATTATATGCTAGAATCCGCGAAGCTCTATATAGCACTAGAGGTTCAAAGGCAATGAACGGTGGAGAGCTTCAG CAAGTTGCAAGAGTTCTCCCTGCTGAAGACCTTGTTGTGAGCGAGCAAGGTGGGGCAGAAGATGTATCTAAAGAGGACAA AAACATTCAATATGCAAGTAGTGTCACATCGACGGCTACAGATGCAACATTACTAAATAGCAAGGCATTTTGTGAGATTG TAGAAGTAGGTAGGGAAGAGATTGTACAAGGTGAGAAGGAGGATGATGAGAAAGTAAATGTCATTCCTAATAAGGAAGTT GATGTGCGTGCACAAAAGGGCAATAGAAGTGTACATATCCGAGCAGAGGTAGAAGAGGCTCTAGAAACACTAGATAAGGC CATTTCAATGGTTAGGGAATACCGAATTCGTTCCCTGTTGGCCTATGAGGATAGTGTTGAAGTACCAAATAGAGATATGC TGGAGGGAACTTCACAAGAAGCACCTCAAGGTGACTCTGGCATCCAAAACTTAAGGTGATTATGTTAATATTTTATGTTT GTTTAAAGGACTAAAAGGTTATGTCTCTTTTTTTTTTTTCTTCCGTATGGTTTTGATAGAATGATTTTGATCATTAATAT TATATATTTTGTTCATGCTTTGATCCTTATTGTATATGCTCGTTCAGGTATACAGGATCAAATCCTTATTCAAAGGAAGT AAATTCTAACAAAGTAGTACCAACATCATCAGAGCAGAATCTTTCAAGGCCTATTGAGTCAAGCCAGGTTGCTTCATATT CTTTGGAAAATGGAGCAATTGAGGACCAAACAACATGCAATAACAAGCTAGTTGACGCTGATTTTGAGCCGTGCGTGCTT TCGGATGACAAAGATAAGTCAACCTGCCAGACTAAAGAAAACACCATTGTAACTAAAGATGTACCAAATAAGTTAAGCAG GCATAAAAAATATCTATACTGTTGTTTTCTATTTTAGCTAGAAGGGAAAGAAAAGTTTAATGGCCAAGTGCAGAGGAAGA AGAAAATGTATTTTGAGGCGTCTTGCTAACATGTAACCCCAAGTCCAATAACTTATTACAGGTTTTATATACATGGGGAT AACTTATCCAACTAGACTCTAGCCCGCTGAGTGTAAGA
CDS sequence (LotjaGi5g1v0107300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGTTCCATGGCCTGCGGCTGTCAGGGAAGCTGTAGTGCACTATAACCTGTTTGAGTGTTTTCAAGATGACTTAAT TGTTGTTCTTACAAATTCGATGCCTGAGTCAAACAGTGGCATCGGGAACCTCTGGGGTTCCAAAAATGAGGCAATTCCTG AAGCAAAGGATGTCGTGAGAGTTGATCTGGTGGGAGGCTTTGCTTTACAAAAGGTGACATCAGAAAGAAGTTACTTTCGG ACAATAGCAAATATGGATATGAAGCTGGGTATTGTCCCTCCATCCTTGATAAACTTTATTTCAAGGCAGCTCATTGGCAA TGGTTTCAAACTTTATAAAAAGACTGTGGCTTCTATGATGAGCCACGAGGAAGAAGAATTCAGCAAGGCATTGGAGGACC CATTATATGCTAGAATCCGCGAAGCTCTATATAGCACTAGAGGTTCAAAGGCAATGAACGGTGGAGAGCTTCAGCAAGTT GCAAGAGTTCTCCCTGCTGAAGACCTTGTTGTGAGCGAGCAAGGTGGGGCAGAAGATGTATCTAAAGAGGACAAAAACAT TCAATATGCAAGTAGTGTCACATCGACGGCTACAGATGCAACATTACTAAATAGCAAGGCATTTTGTGAGATTGTAGAAG TAGGTAGGGAAGAGATTGTACAAGGTGAGAAGGAGGATGATGAGAAAGTAAATGTCATTCCTAATAAGGAAGTTGATGTG CGTGCACAAAAGGGCAATAGAAGTGTACATATCCGAGCAGAGGTAGAAGAGGCTCTAGAAACACTAGATAAGGCCATTTC AATGGTTAGGGAATACCGAATTCGTTCCCTGTTGGCCTATGAGGATAGTGTTGAAGTACCAAATAGAGATATGCTGGAGG GAACTTCACAAGAAGCACCTCAAGGTGACTCTGGCATCCAAAACTTAAGGTATACAGGATCAAATCCTTATTCAAAGGAA GTAAATTCTAACAAAGTAGTACCAACATCATCAGAGCAGAATCTTTCAAGGCCTATTGAGTCAAGCCAGGTTGCTTCATA TTCTTTGGAAAATGGAGCAATTGAGGACCAAACAACATGCAATAACAAGCTAGTTGACGCTGATTTTGAGCCGTGCGTGC TTTCGGATGACAAAGATAAGTCAACCTGCCAGACTAAAGAAAACACCATTGTAACTAAAGATGTACCAAATAAGTTAAGC AGGCATAAAAAATATCTATACTGTTGTTTTCTATTTTAG
Protein sequence (LotjaGi5g1v0107300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVPWPAAVREAVVHYNLFECFQDDLIVVLTNSMPESNSGIGNLWGSKNEAIPEAKDVVRVDLVGGFALQKVTSERSYFR TIANMDMKLGIVPPSLINFISRQLIGNGFKLYKKTVASMMSHEEEEFSKALEDPLYARIREALYSTRGSKAMNGGELQQV ARVLPAEDLVVSEQGGAEDVSKEDKNIQYASSVTSTATDATLLNSKAFCEIVEVGREEIVQGEKEDDEKVNVIPNKEVDV RAQKGNRSVHIRAEVEEALETLDKAISMVREYRIRSLLAYEDSVEVPNRDMLEGTSQEAPQGDSGIQNLRYTGSNPYSKE VNSNKVVPTSSEQNLSRPIESSQVASYSLENGAIEDQTTCNNKLVDADFEPCVLSDDKDKSTCQTKENTIVTKDVPNKLS RHKKYLYCCFLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 116 | 116 | 1.21E-7 | – | |
| PANTHER | 1 | 239 | 239 | 2.7E-112 | – | |
| PANTHER | 1 | 239 | 239 | 2.7E-112 | – | |
| Gene3D | 1 | 120 | 120 | 5.5E-5 | ||
| PANTHER | 277 | 411 | 135 | 2.7E-112 | – | |
| PANTHER | 277 | 411 | 135 | 2.7E-112 | – | |
| MobiDBLite | 293 | 342 | 50 | - | – | |
| MobiDBLite | 294 | 342 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0107300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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