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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0110800 |
Transcript ID | LotjaGi5g1v0110800.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|A0A1J7FQY2|A0A1J7FQY2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0110800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:21986257..21988057) extracted from Lotus japonicus Gifu genome v1.2.
GGAATCAAAAGTAACCTTTAGTCCAAGTAGCCTCTTAACCTTTCTTAGAGGTAGCTCTTCCCCCTTATCACACAACAAAT CTTTCTCTTTTCCTCATTAACGTTGTGTTGGGTTGTTACAAACATCATATATAGCTATCGAACTTGAAGTTATCATTATG TGTGTTTGAGGCACTAGGTGTGATATCAATATTCGTTTAATTTGGTATTCTTTGCTTGATGATTTTTTTTTTCATCCTAA TTTATATCTCTTTTTTGGCTAATCATCGTTTGATTATTATTATTTTAAATGAAAGTGGTTTTTCCCTTTTTCAGTGTTAG TGCTGAATTAGCAAATTGTTGAAATGGATAATCAACTCACAAGTGATAAAACGTATGAGAAATTCACATGGACGATCAAG AATTTCTCTAAATTGAAAACAAAGAAGCTGTACTCTGAGAATTTCGTCATCGGTGGCCATCCATGGTGTGTTAATTTGAA TGCATTCTTGGTTAATGCATATATATATATATATATATATATATATATATCATGTGTATTATATTCTTAGACATGATTTT TCATTTCTGCTAATTTTTCATATATTTTTGGATTTTGCTTATAGGCGGATTCTTATCTTTCCAAAGGGCAACAATACTAG CTACTTGTCAATTTATTTGGATGCTGGAGGGGATCTATCTAATTTGCCAAATGACTGGAGCAGAGTTGAAAAGTTCAAGC TGAGCCTTATTAATCAAGTTAATGGCAAAATGACAATAACTAAAGGTATTGCATTATTGTATATACTAAGTATACTACTC CCACTTTCTAATCATATAGCTAATAGCTCTATTTGTCTGAAATCAATTATTAATCGAAAACTATTGTCTCGTTCTATGAA TGATCTGCTAGAATATGAACACCAGTTCAATGCAAGAGAGTCTGATTGGGGTAGCACGATGTTCATAACTTTACTTGAAC TTTATGACCCTAGTAATGGCTTTATCGTGAATGATACTTGCATTTTTGAAGCTGAGATAGCTGTCACAAAGCCGAAACAT GTGAATCAGCTCGCAGATCAAGTAGTTAATACCCCTAAGGTTAGTTCGGATCAGCCTATTGGGAATGTTTCTAATCCTTT ACCTGAGGAATTCTCTGTTGCATCACATGGTGAGCTTGTGGATTTCAAGAGTTTTGGGAAAATAGAAACAACTTTTGTTC CACTCTTGGAGGAGGTGTGTTCATTGCATCCCTCACTAATTGACTGCCAACGGAAGAGAAGTCGCAAGTTCACAGAATGG GCCTTTACAGCTTTGGGTCGAGTTTTACATTTTCTTAAGACTAGAAAGATGAAAGATATGAATGAGGATGCTTGTAGTCA TCTCCAGTTTCTATGGGAGGAACTTGAGACATGCAAATTTGATTTGACTTGGCTACAACCTCATATTCAATCTACATTGA GTAAGAAAAGTTCTATAGAGAAAGCTTTGAAACTGAAAACGATGAAGGAGAATGTGGATACTCTAGACATGGAAATCAAA TTGCTGGTGGAGAAGCTAATTTCCGCAAAGGTAGATGTTGAAATAACAAAAAGAGATTTGGCAAAAGAAGGCTTTGAAGA GAAGGATTTGGATGTTGAACTAGGATATGGAGTACGTTAGACTCATCACTCGTGTCATTCAAAATTTCACTGTTGGTAAT ATGTGTATATAAATTGTGCTTCTGTGAATAAATAAATGATTGTGGGAGTAGATGTTGAATGAAATTATTATATTCACCTC AAAAAACGCTAATTAGTATGGCAAAAAACCGACGCTAATGA
CDS sequence (LotjaGi5g1v0110800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAATCAACTCACAAGTGATAAAACGTATGAGAAATTCACATGGACGATCAAGAATTTCTCTAAATTGAAAACAAA GAAGCTGTACTCTGAGAATTTCGTCATCGGTGGCCATCCATGGCGGATTCTTATCTTTCCAAAGGGCAACAATACTAGCT ACTTGTCAATTTATTTGGATGCTGGAGGGGATCTATCTAATTTGCCAAATGACTGGAGCAGAGTTGAAAAGTTCAAGCTG AGCCTTATTAATCAAGTTAATGGCAAAATGACAATAACTAAAGGTATTGCATTATTGTATATACTAAGTATACTACTCCC ACTTTCTAATCATATAGCTAATAGCTCTATTTGTCTGAAATCAATTATTAATCGAAAACTATTGTCTCGTTCTATGAATG ATCTGCTAGAATATGAACACCAGTTCAATGCAAGAGAGTCTGATTGGGGTAGCACGATGTTCATAACTTTACTTGAACTT TATGACCCTAGTAATGGCTTTATCGTGAATGATACTTGCATTTTTGAAGCTGAGATAGCTGTCACAAAGCCGAAACATGT GAATCAGCTCGCAGATCAAGTAGTTAATACCCCTAAGGTTAGTTCGGATCAGCCTATTGGGAATGTTTCTAATCCTTTAC CTGAGGAATTCTCTGTTGCATCACATGGTGAGCTTGTGGATTTCAAGAGTTTTGGGAAAATAGAAACAACTTTTGTTCCA CTCTTGGAGGAGGTGTGTTCATTGCATCCCTCACTAATTGACTGCCAACGGAAGAGAAGTCGCAAGTTCACAGAATGGGC CTTTACAGCTTTGGGTCGAGTTTTACATTTTCTTAAGACTAGAAAGATGAAAGATATGAATGAGGATGCTTGTAGTCATC TCCAGTTTCTATGGGAGGAACTTGAGACATGCAAATTTGATTTGACTTGGCTACAACCTCATATTCAATCTACATTGAGT AAGAAAAGTTCTATAGAGAAAGCTTTGAAACTGAAAACGATGAAGGAGAATGTGGATACTCTAGACATGGAAATCAAATT GCTGGTGGAGAAGCTAATTTCCGCAAAGGTAGATGTTGAAATAACAAAAAGAGATTTGGCAAAAGAAGGCTTTGAAGAGA AGGATTTGGATGTTGAACTAGGATATGGAGTACGTTAG
Protein sequence (LotjaGi5g1v0110800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNQLTSDKTYEKFTWTIKNFSKLKTKKLYSENFVIGGHPWRILIFPKGNNTSYLSIYLDAGGDLSNLPNDWSRVEKFKL SLINQVNGKMTITKGIALLYILSILLPLSNHIANSSICLKSIINRKLLSRSMNDLLEYEHQFNARESDWGSTMFITLLEL YDPSNGFIVNDTCIFEAEIAVTKPKHVNQLADQVVNTPKVSSDQPIGNVSNPLPEEFSVASHGELVDFKSFGKIETTFVP LLEEVCSLHPSLIDCQRKRSRKFTEWAFTALGRVLHFLKTRKMKDMNEDACSHLQFLWEELETCKFDLTWLQPHIQSTLS KKSSIEKALKLKTMKENVDTLDMEIKLLVEKLISAKVDVEITKRDLAKEGFEEKDLDVELGYGVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 94 | 93 | 6.2E-96 | – | |
PANTHER | 2 | 94 | 93 | 6.2E-96 | – | |
ProSiteProfiles | 11 | 179 | 169 | 33.406 | ||
SUPERFAMILY | 13 | 184 | 172 | 1.8E-30 | ||
SMART | 13 | 160 | 148 | 1.0E-12 | ||
CDD | 13 | 179 | 167 | 1.0588E-24 | ||
Pfam | 18 | 89 | 72 | 5.0E-7 | ||
PANTHER | 131 | 384 | 254 | 6.2E-96 | – | |
PANTHER | 131 | 384 | 254 | 6.2E-96 | – | |
Coils | 331 | 351 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0110800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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