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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0111500 |
| Transcript ID | LotjaGi5g1v0111500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|A0A1J7FQY2|A0A1J7FQY2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0111500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:22102688..22106340) extracted from Lotus japonicus Gifu genome v1.2.
GCTGCCCCAAAGTCTGACACTGACAGAGAGAAGGAAAGGTCTCATCAGAGCAGGGAAGGCGCAAGGTCTCAATGAAGTGA TTGCCATCACACAATCATATCAAATCCAATCAATGAAAGAAAAAAAGAAAAGGGAGCCTTAGGAGAAGGAGTGGTTTCTT CTTTTCATTTGGAGAGTATTTTCCGTGTTCTGTAGCCATAGGAGAAGAGAACGCATTTTTCTCACCTAGTTTAGAGGTAT GTCTTTTTAAGATTGTTTTGTCCATTATACTTGATCTCTTTGTATTTGTCATTCATGTATGAAGGCATGTTAATGGGGTC ATATTATTTATCATGAATCTTCAATTGTTTTGAATAGTTGGTGCTCATTTTATGCATTCTGACACTGGTAACAATTTATT GTGTGTGATTTTGCTGTTTGTTTTTGCTTTCCCTGTATCCTCATCTGGTATTTTAGTTATTTTTGAATTCTTCTACCCTA AATAGTCGCAATGGGGCGCCAACAGTGGTGCAACAATGGGGCAGCGAGAGAGGGAGAGGAAGATGGTGAGGGTGGCGGAG GAGCAGGTAGGCGGAATGGACAGGTAGCTTTGCGGGAGAGAGGGTGAGGGCCGCCAGAAGAAAGGTGACAGTCGCAGAGG AGGAGGGATGGGGGCAACTGATAGCGGCACAAGAGGGTGCGGGGGAGGGGCGCTGGTGGTAAGGGTGAGTGTGATGGTGC AGGGGCAAGGGGAGGCAGACAAGGCGGAGGGCCCAGACCAGAGAGAGGCGGAGGAAGTGAAGAGAAAAAGTAGGGTTTAT GATTCATAAGCTTGGGCTGAGAAGTCTACGGCTTTTAACGTTGGTTTGACTGATGCTAAATTTCTCACCCATGAAGTGGG TCCTACACACGCGGAGTTAGCCTCGGTTTGCATTGATGCTTATCCGACCGTTGAATGTTTCGTTAGTCAATGTCGCCGCT ATTTGTCCAAGGGCGGACACTGTGTAGGCTGGTGATTTTAGCGTTTGTCATAACCGAAGCTAACTGAAGAGATGCCGACT CTAATTAGCATTGGTCTAGCCGAAGCCAACTTTAACCGAGTTGTTCCATAGGTTTGTGTCGGTTGAGTTGACGCAAATCA GTCACATTCAGCTTCTATAGTGTGGCTGACGCTAAATTTAAACTCTGAATCACCACATCTTATAGTTAGTAGGTAAAAGC CGGTGATTTTAGCGTTTGTCATAACCGACGATAAATGAAGAGATACCGACTCTAATTAGCATTGGTCTAGCCGAAGCCTA CTTTAAACGAGTTGTTCTATATGTTTGAGTCGACTCAAAGCAGTCACATTCAGCATCTATATTGTGGCCGACGCTAACGC CGATGATAACGCTGATTTAGCGTCGACTAGTGTCAACGTTAAGTCCCACAATAGAAGGTTGAAGCTAACCATTTAACTTA GTTTGGCTTATAAAAAAACTATTTAGCTTTTTAGTTTGAGCCGGACGCAACTCACATTTATCACATTAATTAGCCAATAA GTGATTGAAAGGTACAGTTGTTCAGTTGGGAGAAGAATAGCATAAGACACGATAGCGGTAGATATGTTGAAAGAAGAAAT ATGAGATTGAATTTTTCCTGACGAATACTAATGGGTATGGTCAATGGTTTCGCACACACAACAATAATGTATTTAATACT TATTGGGTTTTGTGAGTGCTCAAGAAAGTGGGATAACCAAAAAGGAGATAATATTAATATGCAATACAAGATTTTTTAAA GAAAAGATTTTTACTAGCCAAGAAAAACAGTATATTTAACATAATTTGGATCAGATAAAAAGTTGCATGAGAACTCAAAC TTGTTGCAAGCTGAAGCAAACCTTAATATACAATTTGGGTGTATTTTGAAGTCTTCCACCAAAATTAAAATTGCTGTATC TTGTGCGTGTGTAACTTATCATGATGCTTCAGGTTGCAGGTTGTTAAGATGATCAAGAGTCCAGAAGCAAGGGTTGATAA ATTCACATGGAAGATTGAGAACTTCTCTAAATTGGACTCCAGAACTTCTCTGAATTTCAAGAAGCTGTTTTACTCTCAAA ATTTCTTCCTATGTGGCCATCCATGGTGCTTGAAATCAACTCCATTTTACTCTATATGCATTCATTTATATGTCATGTGC TGTATCTATTTGACATTTTTTTTTCTTAACGTTTCTAGGTGGATTTGTATCTATCCAATGGGGGAAAATGTGGACTACTT CAAAATATATTTGGATGTCGATAGTTTGCCTCGTGGCTGGAGTGAATTTGCAGATTTCACATTGGCTCTAATTAATCAGA CCAATCACAAAATGACGATAAGATATGGTAATGATTCATACTGAACCTCCCTCCTTCTCTTTTTAGTTTTCCATTTTCTT GTTCTCTCATTTTAATTTCTAAATTATTTCGTTCATGAATGAAACTTGTGTGCATAATCTTTTTTTACTTTTTAGTGGCT CTAGCTACTTATATATATGCATTACTATTTAAATTAAAATGGCTACATGAGTAGAAATGTGCGCGCATGTATAATAATTT GTTCATGAGATATTCCAAATCGATTGCAAGTACATTTTTAGGTTATGCTTTGACTTGAAGCATGTTTTTAGATGATTCAA ATAATAATTAGTGGTGTTATTTAGTGTTTTTTTTTATATATATAAGCTCTGGCTCTTTAGTTTTCATTCCAACAGGGTAA TTTTTTTTAAAATCCCTCACAATTGACTTTTGAAGTATTTATTTGCAGAAGCTAAACATGATTTCACAGAGGCAGGGTAC CTTTACGGTTATTCCAAGTTCATAACATTCAGTGAACTCCGTGACCCTATTGGTGGATTTATTGTGAATGATATTTGTGT AATTGAAGCTGAGATTACTGTTTGCAACTCAGAAGAACATGATCAGAGTCAACTCAATAATTCTTTACCTGAGCAAATTT CCTCATCATCACAGCGTGATCTTGTGGATTTCAAGGGTTTAGTGAAAATAGAAAAGGCTTTTGTTCCATTACTAGAGGAA GTATGTTCATGGCATCCCTCACTTGTTGAATTCCTGAAGAAGAGAAGTCGTACACATATGTTTAACGAATGGGCATTTAC TGCTTTGGGTCGAGTTCTACATTTTCTAAAGAATAAAAAGGTGAAAGATATGAATGATGATGCTTGTAATCATCTTCAAA TTTTATGGGAAGAACTTGAGGCATTTAGGTTTGATCTTTCCTGGCTGAAACCTCATGTTCAGTTTGCCTTAGATATTAAA AGTTATCATGAGAGAGCTGTGCATGTGAAGAAGTTGAGGAAGAATGTAGATATTCTTGAAGCAAATCTTAAAATAGCAAG AAGAGAGTTGGTTAAAGCTGAAGAAGGCTTCGAAGAGAGGGATCTCAATGCTGAACTTGGATATGGAAAACCATAGTCTG TTACTTATTGGATGATAATTTTATTTACAACTTTGATGTCGTCATACTCTTTCTCAACTATCTCCATTCCATCTATTATT CCTTGTCTTTTTTTTTTTCTTATCATGTCACTCATCACAACTCATATTGCTCTGTTTATTCTCACTTTTGGTGTGAGTGT CCACTAAGTATGAACATACCTAACCTATAATTCAATTGCTTATTGATGCATAA
CDS sequence (LotjaGi5g1v0111500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAAGAGTCCAGAAGCAAGGGTTGATAAATTCACATGGAAGATTGAGAACTTCTCTAAATTGGACTCCAGAACTTC TCTGAATTTCAAGAAGCTGTTTTACTCTCAAAATTTCTTCCTATGTGGCCATCCATGGTGGATTTGTATCTATCCAATGG GGGAAAATGTGGACTACTTCAAAATATATTTGGATGTCGATAGTTTGCCTCGTGGCTGGAGTGAATTTGCAGATTTCACA TTGGCTCTAATTAATCAGACCAATCACAAAATGACGATAAGATATGAAGCTAAACATGATTTCACAGAGGCAGGGTACCT TTACGGTTATTCCAAGTTCATAACATTCAGTGAACTCCGTGACCCTATTGGTGGATTTATTGTGAATGATATTTGTGTAA TTGAAGCTGAGATTACTGTTTGCAACTCAGAAGAACATGATCAGAGTCAACTCAATAATTCTTTACCTGAGCAAATTTCC TCATCATCACAGCGTGATCTTGTGGATTTCAAGGGTTTAGTGAAAATAGAAAAGGCTTTTGTTCCATTACTAGAGGAAGT ATGTTCATGGCATCCCTCACTTGTTGAATTCCTGAAGAAGAGAAGTCGTACACATATGTTTAACGAATGGGCATTTACTG CTTTGGGTCGAGTTCTACATTTTCTAAAGAATAAAAAGGTGAAAGATATGAATGATGATGCTTGTAATCATCTTCAAATT TTATGGGAAGAACTTGAGGCATTTAGGTTTGATCTTTCCTGGCTGAAACCTCATGTTCAGTTTGCCTTAGATATTAAAAG TTATCATGAGAGAGCTGTGCATGTGAAGAAGTTGAGGAAGAATGTAGATATTCTTGAAGCAAATCTTAAAATAGCAAGAA GAGAGTTGGTTAAAGCTGAAGAAGGCTTCGAAGAGAGGGATCTCAATGCTGAACTTGGATATGGAAAACCATAG
Protein sequence (LotjaGi5g1v0111500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKSPEARVDKFTWKIENFSKLDSRTSLNFKKLFYSQNFFLCGHPWWICIYPMGENVDYFKIYLDVDSLPRGWSEFADFT LALINQTNHKMTIRYEAKHDFTEAGYLYGYSKFITFSELRDPIGGFIVNDICVIEAEITVCNSEEHDQSQLNNSLPEQIS SSSQRDLVDFKGLVKIEKAFVPLLEEVCSWHPSLVEFLKKRSRTHMFNEWAFTALGRVLHFLKNKKVKDMNDDACNHLQI LWEELEAFRFDLSWLKPHVQFALDIKSYHERAVHVKKLRKNVDILEANLKIARRELVKAEEGFEERDLNAELGYGKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 8 | 154 | 147 | 1.4E-32 | ||
| PANTHER | 8 | 152 | 145 | 3.8E-83 | – | |
| PANTHER | 8 | 152 | 145 | 3.8E-83 | – | |
| ProSiteProfiles | 9 | 138 | 130 | 28.445 | ||
| SUPERFAMILY | 11 | 143 | 133 | 1.19E-31 | ||
| SMART | 11 | 119 | 109 | 3.4E-9 | ||
| CDD | 11 | 139 | 129 | 1.0726E-23 | ||
| Pfam | 17 | 140 | 124 | 9.2E-13 | ||
| PANTHER | 152 | 316 | 165 | 3.8E-83 | – | |
| PANTHER | 152 | 316 | 165 | 3.8E-83 | – | |
| Coils | 275 | 302 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0111500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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