Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0111600 |
Transcript ID | LotjaGi5g1v0111600.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|A0A0B2NXJ3|A0A0B2NXJ3_GLYSO Ubiquitin carboxyl-terminal hydrolase 12; Found in the gene: LotjaGi5g1v0111600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:22131650..22137779) extracted from Lotus japonicus Gifu genome v1.2.
GTCGGCTATCTAACATGAAGCAAGGTTAGTGTCATTAAGTGTCTATGTAATTAGCATTCAATTCAATTATTATATCTTCA TCTCATATTGGTATAGCTGGAAGAACAAGAAAGAGGGATCGAGCTACTGGTCCACATACCCAATTGAAGGGAAAACAATC GCGCAGAAGAGTTGATTCCAGTGAGTTTTTTTTCTCTTATCTTATTGATCACATACATGTTCCAGCTGAAAGTGATTTTT TGTCTTTGAAATGCACCAGTGGTTCAATGGCAGTTGTCTGACCAAGGCTCGATTCAAACTGCAACTCATTCAATGGCCGA GTTTCCACCAGGTTTCGTTTTTTCTTTGAAATCATACACAACATGTTACTCCATAAACAAATGCAATTATGCACAACATG TTGTCCACCCAGCTTATTAGTCATAAAGTTGTGTTTAGATTTGGCGGATTTACTTAAATTTCAGTCAATAATGTCGTCTT TTACATTATGTTGTATGCCTAATATAGACCTCAACCTTCTACCTTATTGAAATTGTACATACCCATATGCCTAACCTCAG TTAAAAGAGTGCTGGAAAAAATTTATACTCCAAGCTTTGAAAAAATTTAGATAATGTGATTAATTACAACAAAATCATTG TTGCTAGAGCTCACCACAACAAAATTTACGTGACAGAGTAGAAAATCACTAAATAAGAAGCATAGACAATTTAAGCTTGA TATATTTTCCACACAAGTTGTAGATTATGTGCTCACTAAAAGGATGCAAATATTTGTAGATATAGCAGATCACAATGAAT CCACTAAATAAACCGCAAGCTGATTTCATTATTTTTAGATGCGTAAGACCCCTAACGTTGTTGACCCCATCTATAAATAA GCCATTCATGAATTTGTTTAATGTATGTTAACAAAATAAAAATCGGGCGACCGTGCATCGCACGGGATAAATCCTAGTAA CATTAAGAACAAGAGACAACCATTGAATCATGTGATAGAAACTATATTACATGTAGAAATCAAGAGGAACACATCATAGT GAAAGGCTACATCCAAATCCAACAAACGAAACTTAGCAACCCATAGCCATGGATTGCTTACAAAGATTACCAGAGGGAAA CTAAAGTGAAAGCGGTGACCCGTGACGTCCTAGAACCATTCCTAGCTCGTCGGATGATCAAGAACCTGTGCACCTAAGTC TCTTCTCTGTTCTGGTCGAGTTCCCTCTCTTGAAATCTGAAGAATGGCAAAAGGTCCTTTTTCTCTGTTCAATTCGAGCT TTTAAATGAAGCAGATCGAGCAATTGACGCCAAGCGCCACTTTTGGTGCTAAGCGCCACTTTAAAATAATCTGAACCACC TTAAATGGCGCTAAGCGCAGGCTACCTTCAAAGATGGGTTTTCCCCTGTCCAAATGGTGCTAAGCGCCAGAAATGGGGCT AAGTGCCACCCTTTTTCTAGATCTTCAACTTTCACTTAATTGCTTGGTTCTTCATCAATATTTCTCCTAAAATCAAAAAG TAAGTTTAATTATAGTTAAGATTATATTTAAGACAAAATACTACTAAAATCTAAATATTTACAACTTATGCAAATGAGAG ATAGTTTGGGGAATAAATCATATGTTAAGATCAAATAAGTGACGATTCTAATATGGAAAATCACGTAAATTCGGCACTTA TCAAATCAATGGCACAACTAGATAACTTTGTGTGAAGAGACTTAGAGATTTTGGATTGTAAACTTAAGAGATCCATCTAT GGGCTCAAACAAGCATCTCGACTATGGTATTTCAATTTTTTTTCAAGTGATCTCGTTTGCCTTTGAGATCAATATTATTG ATGATTATATATACCACAAGTTCTGTTGGAGTTAGCATATTTTTAAGGTTTCATATGTCGATGATGAAATTCTGGCACAC GTAAGGACAAATGTTTTACACAATGTCTAAGACATCTTGTATAACATATTACAATCAGAAAAACAAATTTGACAGAATGT AATTTAACTGCAAAAGAACACACATAATTGTTAACCCAGTTCGGTGCAAAATCACTTACGTCTGAAGGGTTTTCACCCGA GAAAGATAATCCACTATATCAAATAATCAAGTACACAAGGTCTTAGATGAATATCGCATATTCATAGCCCCTTTTCCTAT TTCTATAGTGTCTTATTACTTAGTCCTCCCCCTGTGTATGAGAGCCCCTCTCACTTTCTCACACAATCACTACCACATTA ATTGATTCCTTACAATCAGAGTAAATACAGATCACACGATCAGACATACCACACACACCACTCTCAGTCTAACCAGATTC AGTAAACGCTGCTAAGAGAGTTACAACAAAGTACACAGTATGAACTCACAAGAAAACGTAATCTTTTCTCTGCTTCAAAA TTCGTGACCTATCAGCTAGGTCTTGGTCTTCATATATAGCAGTTCCTCAGGCCTTGTCTTTGATGGGCTTGAGCAACAAA GAGTCCATAACACAAACATGAAGTCTATCTTTTTAAAGCAGCAACAAAGCTCTAATTACTAAGATTTTAACAAAAGATAA ACCTTCCACAAACAACCGTTAGATCAAATCTGCTGGAATCAATTTGATCACACTTAGCATATCCATTATACAACACGCAG AAGCCTTATAACAACCCTAGCTTGTTGACCACTTGATCAATCCAACGCTTCTGAGATAAAACACTTAACCACACACAGCA GGCCCACAAGGACAAATGTTACATCCAAGATGCTGCAACATCGTGTCCCACATCTTGCCACATAAACACTTAGCTAAAAT GTAGACAATCCAAGACAATGGAACAACATATGAGATCTTGCTTGGTTTGCTAGTATCAATATAAGTTTATTGCATGAAAC CAAGAGATTTCTAGATAAGAATTTTGAGATGAAAGATCTTGGTGAAACTTCTTTATGGCTTAGATTTTTCACGCTAGTGC AGACATTTTCCGGTGCCAACACTTAGCATGATTTGGATTACTCATGTTTACCTAGCGCCGAGGCATCTTCACCGATTGAA ACTTGTCGATTTATGCTCTTCGGCACCTGATAATTTCCTTTTGGTCTGAAACCAACCCTCCCTTTGCCACGACCTCTTGT GTCCCTTTTTAAAAAATTTGTGCCTTTTGTCGAATTTATTTTAAAAATCCATTAAATCTCTCAATTCAAACTAAGACAAA TGAAAAGAACTCTACATAAGTCGAGGAGTTATGATATGCTCATATTCTTTCCTATCTCATTCTCATTTATATTCTTATTC TATCTTTTTTTTTTCTATCACATCACATGTCATATATCTCAATGCTCTCTCCTTTCTTCCTTGTCTCTCTGCACGAGGTG GAAGTGGAGAGGTGTCAAAGAAATTTTTTTGATAAGTTGACAAGTTCACATTTTGTCTAAATCGAACCCACCCCACCAAC CATGTTGGCCGGTCATACTTGATTAAATACCAATATGAAATGTCCATTGAATGAATAGTCGTATCTGTTTCCAAATCACA AATTACTGAAATTGGATAGTTTGCTTGCAAAACACGTTGACATCTTTCTAAAAAATCATATCATCAACATGCATATACTT CATGCGATGGAGACAGCACAAAAACTCTGAGATCACCTACACTCAGTTGTCACTTCCCTGAACTAATTAAATTTTACTAG TTTTAATTTAATATTCTTTTGCACGATTCATGCTCTGAACTAAGTTATATAAAACTAGGCAAGTTTTTTTTTTCAAAGGA GGAATAAACCGTTAAAGACTACTTTTGTTGCAAGTAATTACCTCACATCCAAAACCTGCGCAAGTTTCTTTCCTTGCAAT TGCCTAACACAGGTATATCATCAGTTTGACATTTTCCACTGATCATTAAATATACTAGCTTGCTTTGATGTCATTCCAAA TGAATCTTCTTGACTTGACTTTACTTCCATATTCATTACTCTCTCTGTTTTACTTCCATTCTATGCTCTTTTAGAGCCTA TCTTTCTCTCCTTGGCGGCTGCAAACAGCACATTTGGACTGGTATAAACACATTGATTCCATTACATGCTTGTTATTTTG ATTTATTATTATATTGGAGAGATAATTTATTTTCTCTCTTTTCTCTCTTTTCTTTTCTTTTCTTCATGGTTGTGCGCCAG ATAGATGTTCATAAAAGAATGGTGAATGAGCTGGCTACGGATGTTAATTTTGAGAAATTCACATGGAGGATTGAAGATTT CTCAAAACAGGATACCTTGAAATTGAGCTCCAAGAAATTCGTAATCCGCGGTTACACATGGTACTTAACTGAAAATATGA GTTTATATTCATGAAGAATTTGTTTATTTTCGGATAGCAAATCCTGATAAATTGTGCAGCTGATAAAAGAAAAAGGAGTA TATGCACTTCTGAGAAACCAAATTTCCCCAATCTGGTGTATTTGTTCATTATTGTAAGTACTTTAACTGATGATGTTGTT TGTTGTCCCAGGAGGATCCTCGTGTGTCCACTCAGGAGGGATGTGAAGCATTTTTCATTGTACTTGATGGTTGTTGATTC TTTGCCCCCGTTTGGATGGAGCAGAAACACGTTTTTCAATTTAGTTCTAATTAATCAGGTGGACAGGAAGAACTCCATTG TGAAAGGTTCCAACCAGATCTTACTTTTCTCTGTATCGTTTTTGTTGTTTGAGTATGTTGCGAAGTCTCACATTAACTAT TAATATGATCAAGTCTTATGATTAGTAGAGCAACTCTCATATATAAATGTTTGACATAGAATTAGTCAAATCCAAATTTT AACATAAAATGGTACTAAGATTCTTGATATGTATATTTGGAGTTCATTTTCTTCAATGGTTGATGCACCCCTGTCAATGT ATACTTCTTTTACACATGCATTTCTGCTGGGCATAATGATTGAATGTCCCAGTAAAACTTCTTTATATTAAAAATGCATA TCCATTAATCTCATATATGTATACTTTTTCAGAGACTAAACAGAAGTTCAATGGAGGACATCGTTGCTGGGGTTCATTTT TCCTGAATCTGGATGACTTGTATGACCGTAAACAAGGGTATCTTGTGAGTGACACATGCATTATTGAAGTTAATATTTGT GTCTCTGCTTTTGGATTTACTAAGATTCAAGACATCTACTCCCTGAATCTTCCAAATTCAACTCCAACCAATGGTTCCAA ATTTGATCAAGCAACAAATCAACGTCCCTCGGATGAGAGGGACACCACACCTAGTCCCAAAACCTCATCAGGATCTAGTC GAAGGGAAGGGGAAATTCAAGGTAGTTCAGATTTGGCAACACTAACAGAACTAATGGATTTGGAGAGTTTAAAGCCAGAA GAACAAGCCCTTTTCCCACTGTTGGAAGGGGTATGCAAACGGCGCCCTTCCCTGATTCAGAGCCAGACGAAGAGCTCTCG TTTGTTCAGACAATGGGCATTCACATCTTTGGGCCGAGTTCTACATTTCCTTAAGACGAAGAAAGTGAAGGACATAAGTG AAGATGACTGCAAGTACCTTCAAGGATTATGGGAGGAACTTGTCAAGTCCTCAGGATTTGACTTGGCTTGGTTGGAGCCG TATGTTCAATCCGCATTGGGCGTGAAAGCAAATTTGAAAAAGTTACAACAGCTGAGGAAACTAACTGACAAGGTGATTGC TTTGGAGCTTAAAATGAGGAAGCAGAGGGGAGAACTAGCTGCTGCAGAAGAGGAGTTTAAGGTTGCAAAGAGAGGCTTGT CAGAAGTAAGAAATGGTTTCCAAGCAATGAATGTAGATGCTCCAATAGGTTATGCTATGTTTTAATTAATTGTACTATGC ATGATACCTGATACTTTTGGTGAAGGAGCTTTTTTCCGCACAAATTATGGACAAACTATAGCTTGTGTGTGTAACATTAT AATCAAGACATACATGTTATTTTCCTTTCTTTTATGCATGTAAGTAAAATGTAATCTATTGTGCATTAATCAGTATTAAA GTATAGGCACATTGTAAATAAGCTTGGTTACTTAGCTAAGAATTAGTTCAGCAGATTAGTTACAAACTGTTAGTTAGCTA CTTGTCAGTTAGAGTTAGTTAACATTCTGGTTTAGTGTGGTTCAAGTAGC
CDS sequence (LotjaGi5g1v0111600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAAGCTGGAAGAACAAGAAAGAGGGATCGAGCTACTGGTCCACATACCCAATTGAAGGGAAAACAATCGCGCAG AAGAGTTGATTCCATGGTTCAATGGCAGTTGTCTGACCAAGGCTCGATTCAAACTGCAACTCATTCAATGGCCGAGTTTC CACCAGAGCCTATCTTTCTCTCCTTGGCGGCTGCAAACAGCACATTTGGACTGATAGATGTTCATAAAAGAATGGTGAAT GAGCTGGCTACGGATGTTAATTTTGAGAAATTCACATGGAGGATTGAAGATTTCTCAAAACAGGATACCTTGAAATTGAG CTCCAAGAAATTCGTAATCCGCGGTTACACATGGAGGATCCTCGTGTGTCCACTCAGGAGGGATGTGAAGCATTTTTCAT TGTACTTGATGGTTGTTGATTCTTTGCCCCCGTTTGGATGGAGCAGAAACACGTTTTTCAATTTAGTTCTAATTAATCAG GTGGACAGGAAGAACTCCATTGTGAAAGAGACTAAACAGAAGTTCAATGGAGGACATCGTTGCTGGGGTTCATTTTTCCT GAATCTGGATGACTTGTATGACCGTAAACAAGGGTATCTTGTGAGTGACACATGCATTATTGAAGTTAATATTTGTGTCT CTGCTTTTGGATTTACTAAGATTCAAGACATCTACTCCCTGAATCTTCCAAATTCAACTCCAACCAATGGTTCCAAATTT GATCAAGCAACAAATCAACGTCCCTCGGATGAGAGGGACACCACACCTAGTCCCAAAACCTCATCAGGATCTAGTCGAAG GGAAGGGGAAATTCAAGGTAGTTCAGATTTGGCAACACTAACAGAACTAATGGATTTGGAGAGTTTAAAGCCAGAAGAAC AAGCCCTTTTCCCACTGTTGGAAGGGGTATGCAAACGGCGCCCTTCCCTGATTCAGAGCCAGACGAAGAGCTCTCGTTTG TTCAGACAATGGGCATTCACATCTTTGGGCCGAGTTCTACATTTCCTTAAGACGAAGAAAGTGAAGGACATAAGTGAAGA TGACTGCAAGTACCTTCAAGGATTATGGGAGGAACTTGTCAAGTCCTCAGGATTTGACTTGGCTTGGTTGGAGCCGTATG TTCAATCCGCATTGGGCGTGAAAGCAAATTTGAAAAAGTTACAACAGCTGAGGAAACTAACTGACAAGGTGATTGCTTTG GAGCTTAAAATGAGGAAGCAGAGGGGAGAACTAGCTGCTGCAGAAGAGGAGTTTAAGGTTGCAAAGAGAGGCTTGTCAGA AGTAAGAAATGGTTTCCAAGCAATGAATGTAGATGCTCCAATAGGTTATGCTATGTTTTAA
Protein sequence (LotjaGi5g1v0111600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQAGRTRKRDRATGPHTQLKGKQSRRRVDSMVQWQLSDQGSIQTATHSMAEFPPEPIFLSLAAANSTFGLIDVHKRMVN ELATDVNFEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVVDSLPPFGWSRNTFFNLVLINQ VDRKNSIVKETKQKFNGGHRCWGSFFLNLDDLYDRKQGYLVSDTCIIEVNICVSAFGFTKIQDIYSLNLPNSTPTNGSKF DQATNQRPSDERDTTPSPKTSSGSSRREGEIQGSSDLATLTELMDLESLKPEEQALFPLLEGVCKRRPSLIQSQTKSSRL FRQWAFTSLGRVLHFLKTKKVKDISEDDCKYLQGLWEELVKSSGFDLAWLEPYVQSALGVKANLKKLQQLRKLTDKVIAL ELKMRKQRGELAAAEEEFKVAKRGLSEVRNGFQAMNVDAPIGYAMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 29 | 29 | - | – | |
MobiDBLite | 8 | 28 | 21 | - | – | |
Gene3D | 78 | 216 | 139 | 8.9E-29 | ||
PANTHER | 80 | 445 | 366 | 1.1E-119 | – | |
PANTHER | 80 | 445 | 366 | 1.1E-119 | – | |
ProSiteProfiles | 88 | 211 | 124 | 19.956 | ||
SUPERFAMILY | 90 | 213 | 124 | 9.16E-26 | ||
SMART | 90 | 192 | 103 | 3.1E-4 | ||
CDD | 90 | 211 | 122 | 2.75881E-25 | ||
Pfam | 96 | 211 | 116 | 4.0E-9 | ||
MobiDBLite | 235 | 272 | 38 | - | – | |
MobiDBLite | 255 | 272 | 18 | - | – | |
Coils | 390 | 417 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0111600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…