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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0111600 |
Transcript ID | LotjaGi5g1v0111600.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|I1JFX1|I1JFX1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0111600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:22131731..22137675) extracted from Lotus japonicus Gifu genome v1.2.
CTCATATTGGTATAGCTGGAAGAACAAGAAAGAGGGATCGAGCTACTGGTCCACATACCCAATTGAAGGGAAAACAATCG CGCAGAAGAGTTGATTCCAGTGAGTTTTTTTTCTCTTATCTTATTGATCACATACATGTTCCAGCTGAAAGTGATTTTTT GTCTTTGAAATGCACCAGTGGTTCAATGGCAGTTGTCTGACCAAGGCTCGATTCAAACTGCAACTCATTCAATGGCCGAG TTTCCACCAGGTTTCGTTTTTTCTTTGAAATCATACACAACATGTTACTCCATAAACAAATGCAATTATGCACAACATGT TGTCCACCCAGCTTATTAGTCATAAAGTTGTGTTTAGATTTGGCGGATTTACTTAAATTTCAGTCAATAATGTCGTCTTT TACATTATGTTGTATGCCTAATATAGACCTCAACCTTCTACCTTATTGAAATTGTACATACCCATATGCCTAACCTCAGT TAAAAGAGTGCTGGAAAAAATTTATACTCCAAGCTTTGAAAAAATTTAGATAATGTGATTAATTACAACAAAATCATTGT TGCTAGAGCTCACCACAACAAAATTTACGTGACAGAGTAGAAAATCACTAAATAAGAAGCATAGACAATTTAAGCTTGAT ATATTTTCCACACAAGTTGTAGATTATGTGCTCACTAAAAGGATGCAAATATTTGTAGATATAGCAGATCACAATGAATC CACTAAATAAACCGCAAGCTGATTTCATTATTTTTAGATGCGTAAGACCCCTAACGTTGTTGACCCCATCTATAAATAAG CCATTCATGAATTTGTTTAATGTATGTTAACAAAATAAAAATCGGGCGACCGTGCATCGCACGGGATAAATCCTAGTAAC ATTAAGAACAAGAGACAACCATTGAATCATGTGATAGAAACTATATTACATGTAGAAATCAAGAGGAACACATCATAGTG AAAGGCTACATCCAAATCCAACAAACGAAACTTAGCAACCCATAGCCATGGATTGCTTACAAAGATTACCAGAGGGAAAC TAAAGTGAAAGCGGTGACCCGTGACGTCCTAGAACCATTCCTAGCTCGTCGGATGATCAAGAACCTGTGCACCTAAGTCT CTTCTCTGTTCTGGTCGAGTTCCCTCTCTTGAAATCTGAAGAATGGCAAAAGGTCCTTTTTCTCTGTTCAATTCGAGCTT TTAAATGAAGCAGATCGAGCAATTGACGCCAAGCGCCACTTTTGGTGCTAAGCGCCACTTTAAAATAATCTGAACCACCT TAAATGGCGCTAAGCGCAGGCTACCTTCAAAGATGGGTTTTCCCCTGTCCAAATGGTGCTAAGCGCCAGAAATGGGGCTA AGTGCCACCCTTTTTCTAGATCTTCAACTTTCACTTAATTGCTTGGTTCTTCATCAATATTTCTCCTAAAATCAAAAAGT AAGTTTAATTATAGTTAAGATTATATTTAAGACAAAATACTACTAAAATCTAAATATTTACAACTTATGCAAATGAGAGA TAGTTTGGGGAATAAATCATATGTTAAGATCAAATAAGTGACGATTCTAATATGGAAAATCACGTAAATTCGGCACTTAT CAAATCAATGGCACAACTAGATAACTTTGTGTGAAGAGACTTAGAGATTTTGGATTGTAAACTTAAGAGATCCATCTATG GGCTCAAACAAGCATCTCGACTATGGTATTTCAATTTTTTTTCAAGTGATCTCGTTTGCCTTTGAGATCAATATTATTGA TGATTATATATACCACAAGTTCTGTTGGAGTTAGCATATTTTTAAGGTTTCATATGTCGATGATGAAATTCTGGCACACG TAAGGACAAATGTTTTACACAATGTCTAAGACATCTTGTATAACATATTACAATCAGAAAAACAAATTTGACAGAATGTA ATTTAACTGCAAAAGAACACACATAATTGTTAACCCAGTTCGGTGCAAAATCACTTACGTCTGAAGGGTTTTCACCCGAG AAAGATAATCCACTATATCAAATAATCAAGTACACAAGGTCTTAGATGAATATCGCATATTCATAGCCCCTTTTCCTATT TCTATAGTGTCTTATTACTTAGTCCTCCCCCTGTGTATGAGAGCCCCTCTCACTTTCTCACACAATCACTACCACATTAA TTGATTCCTTACAATCAGAGTAAATACAGATCACACGATCAGACATACCACACACACCACTCTCAGTCTAACCAGATTCA GTAAACGCTGCTAAGAGAGTTACAACAAAGTACACAGTATGAACTCACAAGAAAACGTAATCTTTTCTCTGCTTCAAAAT TCGTGACCTATCAGCTAGGTCTTGGTCTTCATATATAGCAGTTCCTCAGGCCTTGTCTTTGATGGGCTTGAGCAACAAAG AGTCCATAACACAAACATGAAGTCTATCTTTTTAAAGCAGCAACAAAGCTCTAATTACTAAGATTTTAACAAAAGATAAA CCTTCCACAAACAACCGTTAGATCAAATCTGCTGGAATCAATTTGATCACACTTAGCATATCCATTATACAACACGCAGA AGCCTTATAACAACCCTAGCTTGTTGACCACTTGATCAATCCAACGCTTCTGAGATAAAACACTTAACCACACACAGCAG GCCCACAAGGACAAATGTTACATCCAAGATGCTGCAACATCGTGTCCCACATCTTGCCACATAAACACTTAGCTAAAATG TAGACAATCCAAGACAATGGAACAACATATGAGATCTTGCTTGGTTTGCTAGTATCAATATAAGTTTATTGCATGAAACC AAGAGATTTCTAGATAAGAATTTTGAGATGAAAGATCTTGGTGAAACTTCTTTATGGCTTAGATTTTTCACGCTAGTGCA GACATTTTCCGGTGCCAACACTTAGCATGATTTGGATTACTCATGTTTACCTAGCGCCGAGGCATCTTCACCGATTGAAA CTTGTCGATTTATGCTCTTCGGCACCTGATAATTTCCTTTTGGTCTGAAACCAACCCTCCCTTTGCCACGACCTCTTGTG TCCCTTTTTAAAAAATTTGTGCCTTTTGTCGAATTTATTTTAAAAATCCATTAAATCTCTCAATTCAAACTAAGACAAAT GAAAAGAACTCTACATAAGTCGAGGAGTTATGATATGCTCATATTCTTTCCTATCTCATTCTCATTTATATTCTTATTCT ATCTTTTTTTTTTCTATCACATCACATGTCATATATCTCAATGCTCTCTCCTTTCTTCCTTGTCTCTCTGCACGAGGTGG AAGTGGAGAGGTGTCAAAGAAATTTTTTTGATAAGTTGACAAGTTCACATTTTGTCTAAATCGAACCCACCCCACCAACC ATGTTGGCCGGTCATACTTGATTAAATACCAATATGAAATGTCCATTGAATGAATAGTCGTATCTGTTTCCAAATCACAA ATTACTGAAATTGGATAGTTTGCTTGCAAAACACGTTGACATCTTTCTAAAAAATCATATCATCAACATGCATATACTTC ATGCGATGGAGACAGCACAAAAACTCTGAGATCACCTACACTCAGTTGTCACTTCCCTGAACTAATTAAATTTTACTAGT TTTAATTTAATATTCTTTTGCACGATTCATGCTCTGAACTAAGTTATATAAAACTAGGCAAGTTTTTTTTTTCAAAGGAG GAATAAACCGTTAAAGACTACTTTTGTTGCAAGTAATTACCTCACATCCAAAACCTGCGCAAGTTTCTTTCCTTGCAATT GCCTAACACAGGTATATCATCAGTTTGACATTTTCCACTGATCATTAAATATACTAGCTTGCTTTGATGTCATTCCAAAT GAATCTTCTTGACTTGACTTTACTTCCATATTCATTACTCTCTCTGTTTTACTTCCATTCTATGCTCTTTTAGAGCCTAT CTTTCTCTCCTTGGCGGCTGCAAACAGCACATTTGGACTGGTATAAACACATTGATTCCATTACATGCTTGTTATTTTGA TTTATTATTATATTGGAGAGATAATTTATTTTCTCTCTTTTCTCTCTTTTCTTTTCTTTTCTTCATGGTTGTGCGCCAGA TAGATGTTCATAAAAGAATGGTGAATGAGCTGGCTACGGATGTTAATTTTGAGAAATTCACATGGAGGATTGAAGATTTC TCAAAACAGGATACCTTGAAATTGAGCTCCAAGAAATTCGTAATCCGCGGTTACACATGGTACTTAACTGAAAATATGAG TTTATATTCATGAAGAATTTGTTTATTTTCGGATAGCAAATCCTGATAAATTGTGCAGCTGATAAAAGAAAAAGGAGTAT ATGCACTTCTGAGAAACCAAATTTCCCCAATCTGGTGTATTTGTTCATTATTGTAAGTACTTTAACTGATGATGTTGTTT GTTGTCCCAGGAGGATCCTCGTGTGTCCACTCAGGAGGGATGTGAAGCATTTTTCATTGTACTTGATGGTTGTTGATTCT TTGCCCCCGTTTGGATGGAGCAGAAACACGTTTTTCAATTTAGTTCTAATTAATCAGGTGGACAGGAAGAACTCCATTGT GAAAGGTTCCAACCAGATCTTACTTTTCTCTGTATCGTTTTTGTTGTTTGAGTATGTTGCGAAGTCTCACATTAACTATT AATATGATCAAGTCTTATGATTAGTAGAGCAACTCTCATATATAAATGTTTGACATAGAATTAGTCAAATCCAAATTTTA ACATAAAATGGTACTAAGATTCTTGATATGTATATTTGGAGTTCATTTTCTTCAATGGTTGATGCACCCCTGTCAATGTA TACTTCTTTTACACATGCATTTCTGCTGGGCATAATGATTGAATGTCCCAGTAAAACTTCTTTATATTAAAAATGCATAT CCATTAATCTCATATATGTATACTTTTTCAGAGACTAAACAGAAGTTCAATGGAGGACATCGTTGCTGGGGTTCATTTTT CCTGAATCTGGATGACTTGTATGACCGTAAACAAGGGTATCTTGTGAGTGACACATGCATTATTGAAGTTAATATTTGTG TCTCTGCTTTTGGATTTACTAAGATTCAAGACATCTACTCCCTGAATCTTCCAAATTCAACTCCAACCAATGGTTCCAAA TTTGATCAAGCAACAAATCAACGTCCCTCGGATGAGAGGGACACCACACCTAGTCCCAAAACCTCATCAGGATCTAGTCG AAGGGAAGGGGAAATTCAAGGTAGTTCAGATTTGGCAACACTAACAGAACTAATGGATTTGGAGAGTTTAAAGCCAGAAG AACAAGCCCTTTTCCCACTGTTGGAAGGGGTATGCAAACGGCGCCCTTCCCTGATTCAGAGCCAGACGAAGAGCTCTCGT TTGTTCAGACAATGGGCATTCACATCTTTGGGCCGAGTTCTACATTTCCTTAAGACGAAGAAAGTGAAGGACATAAGTGA AGATGACTGCAAGTACCTTCAAGGATTATGGGAGGAACTTGTCAAGTCCTCAGGATTTGACTTGGCTTGGTTGGAGCCGT ATGTTCAATCCGCATTGGGCGTGAAAGCAAATTTGAAAAAGTTACAACAGCTGAGGAAACTAACTGACAAGGTGATTGCT TTGGAGCTTAAAATGAGGAAGCAGAGGGGAGAACTAGCTGCTGCAGAAGAGGAGTTTAAGGTTGCAAAGAGAGGCTTGTC AGAAGTAAGAAATGGTTTCCAAGCAATGAATGTAGATGCTCCAATAGGTTATGCTATGTTTTAATTAATTGTACTATGCA TGATACCTGATACTTTTGGTGAAGGAGCTTTTTTCCGCACAAATTATGGACAAACTATAGCTTGTGTGTGTAACATTATA ATCAAGACATACATGTTATTTTCCTTTCTTTTATGCATGTAAGTAAAATGTAATCTATTGTGCATTAATCAGTATTAAAG TATAGGCACATTGTAAATAAGCTTG
CDS sequence (LotjaGi5g1v0111600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAATGAGCTGGCTACGGATGTTAATTTTGAGAAATTCACATGGAGGATTGAAGATTTCTCAAAACAGGATACCTT GAAATTGAGCTCCAAGAAATTCGTAATCCGCGGTTACACATGGAGGATCCTCGTGTGTCCACTCAGGAGGGATGTGAAGC ATTTTTCATTGTACTTGATGGTTGTTGATTCTTTGCCCCCGTTTGGATGGAGCAGAAACACGTTTTTCAATTTAGTTCTA ATTAATCAGGTGGACAGGAAGAACTCCATTGTGAAAGAGACTAAACAGAAGTTCAATGGAGGACATCGTTGCTGGGGTTC ATTTTTCCTGAATCTGGATGACTTGTATGACCGTAAACAAGGGTATCTTGTGAGTGACACATGCATTATTGAAGTTAATA TTTGTGTCTCTGCTTTTGGATTTACTAAGATTCAAGACATCTACTCCCTGAATCTTCCAAATTCAACTCCAACCAATGGT TCCAAATTTGATCAAGCAACAAATCAACGTCCCTCGGATGAGAGGGACACCACACCTAGTCCCAAAACCTCATCAGGATC TAGTCGAAGGGAAGGGGAAATTCAAGGTAGTTCAGATTTGGCAACACTAACAGAACTAATGGATTTGGAGAGTTTAAAGC CAGAAGAACAAGCCCTTTTCCCACTGTTGGAAGGGGTATGCAAACGGCGCCCTTCCCTGATTCAGAGCCAGACGAAGAGC TCTCGTTTGTTCAGACAATGGGCATTCACATCTTTGGGCCGAGTTCTACATTTCCTTAAGACGAAGAAAGTGAAGGACAT AAGTGAAGATGACTGCAAGTACCTTCAAGGATTATGGGAGGAACTTGTCAAGTCCTCAGGATTTGACTTGGCTTGGTTGG AGCCGTATGTTCAATCCGCATTGGGCGTGAAAGCAAATTTGAAAAAGTTACAACAGCTGAGGAAACTAACTGACAAGGTG ATTGCTTTGGAGCTTAAAATGAGGAAGCAGAGGGGAGAACTAGCTGCTGCAGAAGAGGAGTTTAAGGTTGCAAAGAGAGG CTTGTCAGAAGTAAGAAATGGTTTCCAAGCAATGAATGTAGATGCTCCAATAGGTTATGCTATGTTTTAA
Protein sequence (LotjaGi5g1v0111600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNELATDVNFEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVVDSLPPFGWSRNTFFNLVL INQVDRKNSIVKETKQKFNGGHRCWGSFFLNLDDLYDRKQGYLVSDTCIIEVNICVSAFGFTKIQDIYSLNLPNSTPTNG SKFDQATNQRPSDERDTTPSPKTSSGSSRREGEIQGSSDLATLTELMDLESLKPEEQALFPLLEGVCKRRPSLIQSQTKS SRLFRQWAFTSLGRVLHFLKTKKVKDISEDDCKYLQGLWEELVKSSGFDLAWLEPYVQSALGVKANLKKLQQLRKLTDKV IALELKMRKQRGELAAAEEEFKVAKRGLSEVRNGFQAMNVDAPIGYAMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 368 | 366 | 5.6E-120 | – | |
PANTHER | 3 | 368 | 366 | 5.6E-120 | – | |
Gene3D | 4 | 139 | 136 | 7.0E-29 | ||
ProSiteProfiles | 11 | 134 | 124 | 19.956 | ||
CDD | 13 | 134 | 122 | 7.80503E-25 | ||
SMART | 13 | 115 | 103 | 3.1E-4 | ||
SUPERFAMILY | 13 | 136 | 124 | 6.21E-26 | ||
Pfam | 19 | 134 | 116 | 2.8E-9 | ||
MobiDBLite | 158 | 195 | 38 | - | – | |
MobiDBLite | 178 | 195 | 18 | - | – | |
Coils | 313 | 340 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0111600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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