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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0113400 |
| Transcript ID | LotjaGi5g1v0113400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/arginine rich splicing factor, putative; TAIR: AT1G55310.2 SC35-like splicing factor 33; Swiss-Prot: sp|Q9LHP2|SL30A_ARATH Serine/arginine-rich SC35-like splicing factor SCL30A; TrEMBL-Plants: tr|I3SR49|I3SR49_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0113400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:22639176..22641758) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAGCATAGCCGGAGAAGTTTCTGGAATCCAGAAGAACGAGGTTGCAAATATAAAGAACGAATCCACGATCGAGAATC ATACGATCACACAATTCACAACATTTTTTCTTCTCATCCGAAACCTTGCGAAGCAGGTATTCATCCGATTCAATCTTCCT TGCATTTTGATCACTGATTCTCAATTCATTGCATCGATCATACCACAATTGCCACGATCTTGTGTAGCAATTTCTATCAG CATTTAAACATTACATGTAATCCTCTATTTTCGTGTTGTTGATTTGGAAATGGTTGAAATTAGGGTTTGAATTTCCTCTA TGATTATGAAAATTGTCATTGTAGTGTTTGATTTCGTTGAATTTCTACGATTTCAACATTGTCTTCAATAATTTGCTTAC GTTTGGTGATAGATAAGGTGAATCAACAATCACCACCATGAGGGGGAGAAGCTACAGTTACAGTCCCTCACCTCCAAGGC GTTACGGCGGCCGAAGAAGGCGCAGTCCTAGCCCTAAGGGCCGCTACCGTGGAAGGGAAAGGGATTTGCCTACTAGTCTT CTGGTTCGGAACCTGCACAGAGATACCAGGTTAGACATGTTTCTATGGTTGGTATTTTGCATCTGATGAAATCATGGGTG TTGAAAGAGAATGATGGTGTAGGAAGAGCAGTGCTAGTGTTATTGCTTATGATTTGATTTGAAATTTTAACTGGAATGCT TGGTTTTGCAGGACAGAAGATCTGCATGGTCCCTTTAGCCACTTTGGTCCTATCAAAGATGTTTATCTGCCTCGCGATTA TTATACTGGGTGAGTTTGTTTGAGTGTTTTCATTTGCTGAATCATGGTTTATTTGGTTTTGAAATATTTTTAGGCTTCTG TTCTCATGTTTATTTAGGGTCTCTGTTCATATAGTCTTAGGGGAAAAAGTGTTTAATGTTGTTTTGAAGATCTATTCGTT ATTCTTGAGAGCTTTGCACTGTATACTTTTTATGTTAGGAAATAGTTATGATTAGCATGTTTTTCCAGTGTAACTTGTCA TAATCTGCTCTTTTTCCTATTCTGATGTGTTTTGAAAGTTAGAACAAGCGTTCTAAATGGAAGCGCTCTTTCTTTTATAA TATCAGAAAAATGGATCAACTCCACTCTTATCCATTTTGAAAATTTCCATTCCTGACCTGGGATTTTGCAAAGATTTAGT GGTTTTTTGTGTGCATTTAGTTTTGTCACTGCTTTAACTGTAAGATTTAATACTCCAATCATTTTATGGGATTTGGTTGT TTTATTGAAAGAGTTGAAGACAAGAATGAAGTAGTGAGAGTTCTGTGTTGAAGACAAGAAAGAAGTAATAAGAGTGTCAT GGTGAAGAAGACACCAATCAGGTAGTAAAAGTTCTATTCAGGTTGATGTTAGTTTACTGGAAGGTTCGGAAGGTTGAGTT TGAATTCATTGTGAAGAAGTTCAAGTCTTGAAGATTTTCATCTCAATACTTTGGCTTCTACAAGGTTAGCATCAATGTGG TGTTTATTATTGAATTCTATGGAGTGTTGACAGTATGACTTGTGATAGTTTGGAGTCTGGATCCCGTTTGTGGATATCTG CAACCAACCCAGCTTCAGCATGCAGGTGTGTTTATTTATCACGCCACACATATGGTGTCTCTGATGATTTTGGATCTGAT GGTACAGGAATCCAAGAGGTTTTGGGTTTGTTCAATATGTGGATCCAGCTGATGCTGCAGATGCAAAATATCACTTGGAT GGTCAAATTCTTCTTGGTCGTGAGTTAACTGTGGTGTTTGCCGAAGAAAACAGAAAGAAGCCTGCAGAAATGAGGGCAAG AGAGCGTCATAGGTAAGGATATAGATTGTTGATTGTTTGCTTATGATTGAATCAAATATTATCATGTCATTCTGAAATTG CTATTGTTTGAACTTTGAAGTACTAGGGAGCGGTCATATGATTATAGGCGATCTCCGCGTGGGTATTCTCGTTCTCCGCG TTATGCACGGACCTATTCACGTAGTCCAGACTATACACCTTCTCCAAGAAGGTGGCGATATTCAAGGTATGTTGTTCAAG TTAGCTTTTTAACTGATTCTTCATTTGTGATGTATACTACTTGCAGTGTTTGTATTCTTAGAATGGCCTCCTTCATTATG ATTCAGGTCAATCTCACCAAGAGATAGAAGGTATGGTAGGCGATCATACTCTGGATCACCTTATGGATCTAGAAGCCGCA GCCGAAGTAGGAGTTACAGCAGAAGGAGCTATAGTAGAAGCGTGAGTAGGAGTCCAGGCTACTCTAGGTGAACAACTTGA CAAACTTGGTGAATGTGGTGGAAGATGTTGTAGTTTTCATATGTTTCTGTTGAGGCTTGTGTGTTCAATGCTTCAGATCG ACAGTAGTTAGTTAATCTGGTAGTCAGGATTTGTATTTGTCATGGTTGTCTTTCATTTTTATGATCTGGTGATAACTTCT ATTCGTGCTCTATTTTCAGTGCGGTTTTTGTTGAACTGCTTCTTGGACAAAGTTTTTTATGTGTATGCGTTGTGGAATTT CATAGATGTGTTTATTCTTCACC
CDS sequence (LotjaGi5g1v0113400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGGGAGAAGCTACAGTTACAGTCCCTCACCTCCAAGGCGTTACGGCGGCCGAAGAAGGCGCAGTCCTAGCCCTAA GGGCCGCTACCGTGGAAGGGAAAGGGATTTGCCTACTAGTCTTCTGGTTCGGAACCTGCACAGAGATACCAGGACAGAAG ATCTGCATGGTCCCTTTAGCCACTTTGGTCCTATCAAAGATGTTTATCTGCCTCGCGATTATTATACTGGGAATCCAAGA GGTTTTGGGTTTGTTCAATATGTGGATCCAGCTGATGCTGCAGATGCAAAATATCACTTGGATGGTCAAATTCTTCTTGG TCGTGAGTTAACTGTGGTGTTTGCCGAAGAAAACAGAAAGAAGCCTGCAGAAATGAGGGCAAGAGAGCGTCATAGTACTA GGGAGCGGTCATATGATTATAGGCGATCTCCGCGTGGGTATTCTCGTTCTCCGCGTTATGCACGGACCTATTCACGTAGT CCAGACTATACACCTTCTCCAAGAAGGTGGCGATATTCAAGGTCAATCTCACCAAGAGATAGAAGGTATGGTAGGCGATC ATACTCTGGATCACCTTATGGATCTAGAAGCCGCAGCCGAAGTAGGAGTTACAGCAGAAGGAGCTATAGTAGAAGCGTGA GTAGGAGTCCAGGCTACTCTAGGTGA
Protein sequence (LotjaGi5g1v0113400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGRSYSYSPSPPRRYGGRRRRSPSPKGRYRGRERDLPTSLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTGNPR GFGFVQYVDPADAADAKYHLDGQILLGRELTVVFAEENRKKPAEMRARERHSTRERSYDYRRSPRGYSRSPRYARTYSRS PDYTPSPRRWRYSRSISPRDRRYGRRSYSGSPYGSRSRSRSRSYSRRSYSRSVSRSPGYSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| Gene3D | 3 | 131 | 129 | 4.9E-26 | ||
| PANTHER | 14 | 201 | 188 | 1.3E-84 | – | |
| PANTHER | 14 | 201 | 188 | 1.3E-84 | – | |
| ProSiteProfiles | 39 | 117 | 79 | 17.148 | ||
| SUPERFAMILY | 39 | 146 | 108 | 5.51E-28 | ||
| SMART | 40 | 113 | 74 | 1.3E-20 | ||
| Pfam | 41 | 110 | 70 | 2.1E-19 | ||
| MobiDBLite | 119 | 221 | 103 | - | – | |
| MobiDBLite | 119 | 146 | 28 | - | – | |
| MobiDBLite | 206 | 221 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0113400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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